Wall clock time and date at job start Mon Mar 30 2020 00:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31575 * 1 3 3 Si 1.86794 * 120.00082 * 2 1 4 4 H 1.48501 * 109.47347 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46973 * 300.00118 * 3 2 1 6 6 H 1.48507 * 109.47109 * 59.99859 * 3 2 1 7 7 C 1.38630 * 119.99994 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99901 * 180.02562 * 7 2 1 9 9 O 1.34815 * 119.99867 * 359.97438 * 7 2 1 10 10 C 1.35817 * 116.99702 * 185.05375 * 9 7 2 11 11 C 1.39454 * 120.40590 * 354.53010 * 10 9 7 12 12 C 1.38202 * 118.44861 * 179.72598 * 11 10 9 13 13 C 1.39171 * 119.17049 * 0.24582 * 12 11 10 14 14 N 1.39125 * 119.62920 * 180.02562 * 13 12 11 15 15 C 1.46500 * 119.99957 * 359.97438 * 14 13 12 16 16 C 1.50705 * 109.46722 * 180.02562 * 15 14 13 17 17 C 1.38599 * 120.80109 * 269.72061 * 16 15 14 18 18 N 1.32328 * 119.10372 * 179.72162 * 17 16 15 19 19 C 1.31798 * 120.82031 * 0.56725 * 18 17 16 20 20 N 1.31796 * 121.74954 * 359.70903 * 19 18 17 21 21 C 1.32335 * 120.81992 * 359.97438 * 20 19 18 22 22 N 1.32378 * 120.73743 * 0.02757 * 13 12 11 23 23 C 1.31938 * 121.69490 * 359.97429 * 22 13 12 24 24 H 0.96999 * 120.00032 * 359.97438 * 1 2 3 25 25 H 1.08000 * 120.77181 * 359.97438 * 11 10 9 26 26 H 1.07998 * 120.41277 * 180.22597 * 12 11 10 27 27 H 0.97001 * 119.99719 * 179.97438 * 14 13 12 28 28 H 1.08992 * 109.47527 * 300.00358 * 15 14 13 29 29 H 1.09002 * 109.47005 * 60.00769 * 15 14 13 30 30 H 1.08004 * 120.44799 * 0.02562 * 17 16 15 31 31 H 1.07997 * 119.12436 * 179.72354 * 19 18 17 32 32 H 1.07998 * 120.44423 * 180.02562 * 21 20 19 33 33 H 1.07993 * 119.61878 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7098 1.3464 0.0006 5 1 1.8910 2.3964 -1.2125 6 1 1.8910 2.3964 1.2125 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2006 -0.0001 9 8 1.3348 -2.3681 -0.0005 10 6 2.0705 -3.5048 0.1055 11 6 3.4638 -3.4474 0.0941 12 6 4.1724 -4.6283 0.2103 13 6 3.4768 -5.8278 0.3289 14 7 4.1805 -7.0222 0.4471 15 6 5.6454 -7.0124 0.4456 16 6 6.1572 -8.4231 0.5846 17 6 6.4041 -8.9685 1.8346 18 7 6.8478 -10.2124 1.9178 19 6 7.0653 -10.9259 0.8312 20 7 6.8471 -10.4385 -0.3737 21 6 6.3975 -9.2043 -0.5346 22 7 2.1531 -5.8451 0.3306 23 6 1.4453 -4.7370 0.2214 24 1 -0.4850 0.8400 0.0004 25 1 3.9771 -2.5018 0.0006 26 1 5.2523 -4.6203 0.2088 27 1 3.7011 -7.8613 0.5304 28 1 6.0050 -6.5865 -0.4910 29 1 6.0056 -6.4110 1.2803 30 1 6.2320 -8.3879 2.7288 31 1 7.4318 -11.9369 0.9308 32 1 6.2204 -8.8112 -1.5248 33 1 0.3667 -4.7900 0.2270 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167258445.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:42 Heat of formation + Delta-G solvation = 47.628898 kcal Electronic energy + Delta-G solvation = -18929.727902 eV Core-core repulsion = 15762.976180 eV Total energy + Delta-G solvation = -3166.751722 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.04767 -41.20937 -39.09939 -36.84546 -34.72159 -34.28940 -33.30728 -32.86723 -29.83171 -27.62078 -26.81528 -25.59999 -24.72178 -23.61365 -22.63561 -20.01368 -19.13438 -18.60631 -18.58439 -17.83646 -17.58286 -16.19869 -16.01446 -15.82511 -15.77676 -15.41165 -14.95933 -14.86639 -14.63453 -14.49673 -14.29630 -13.99738 -13.60322 -13.50868 -13.23236 -12.73999 -12.07718 -11.88632 -11.86831 -11.55795 -11.02512 -10.63409 -10.59128 -10.38786 -10.32809 -10.18934 -8.41249 -8.26166 -6.06019 -0.22975 0.06187 0.39710 0.75581 1.39515 1.47569 1.57194 2.19695 2.32631 2.85597 2.91964 3.20977 3.22686 3.24307 3.55577 3.57900 3.64595 3.84010 3.87027 4.13614 4.33657 4.39605 4.47788 4.62585 4.68208 4.92194 4.94602 4.99426 5.30969 5.37560 5.53342 5.55082 5.91296 6.03069 6.24506 6.69705 7.03292 7.04346 7.33414 7.84747 8.82406 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.046174 B = 0.003023 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.250900 B = 9260.547491 C = 9582.533559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.025 4.025 3 Si 1.017 2.983 4 H -0.248 1.248 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.408 4.408 8 H 0.104 0.896 9 O -0.230 6.230 10 C 0.025 3.975 11 C -0.150 4.150 12 C -0.174 4.174 13 C 0.328 3.672 14 N -0.725 5.725 15 C 0.185 3.815 16 C -0.202 4.202 17 C 0.164 3.836 18 N -0.541 5.541 19 C 0.290 3.710 20 N -0.541 5.541 21 C 0.164 3.836 22 N -0.516 5.516 23 C 0.063 3.937 24 H 0.271 0.729 25 H 0.139 0.861 26 H 0.162 0.838 27 H 0.400 0.600 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.186 0.814 31 H 0.220 0.780 32 H 0.186 0.814 33 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.701 -14.896 1.219 22.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.222 4.222 3 Si 0.837 3.163 4 H -0.171 1.171 5 H -0.197 1.197 6 H -0.198 1.198 7 C -0.484 4.484 8 H 0.121 0.879 9 O -0.136 6.136 10 C -0.028 4.028 11 C -0.177 4.177 12 C -0.198 4.198 13 C 0.093 3.907 14 N -0.363 5.363 15 C 0.061 3.939 16 C -0.207 4.207 17 C -0.002 4.002 18 N -0.255 5.255 19 C 0.003 3.997 20 N -0.254 5.254 21 C -0.002 4.002 22 N -0.233 5.233 23 C -0.094 4.094 24 H 0.080 0.920 25 H 0.157 0.843 26 H 0.180 0.820 27 H 0.234 0.766 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.203 0.797 31 H 0.236 0.764 32 H 0.203 0.797 33 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 16.401 -16.381 1.360 23.220 hybrid contribution -0.281 2.058 -0.143 2.082 sum 16.120 -14.323 1.217 21.598 Atomic orbital electron populations 1.70202 1.08036 1.28556 1.49384 1.26538 0.96808 1.02678 0.96222 0.84541 0.78451 0.75032 0.78274 1.17066 1.19713 1.19757 1.21819 0.92495 0.81412 1.52684 0.87905 1.83964 1.35100 1.12039 1.82476 1.20628 0.92294 0.89162 1.00718 1.21602 0.92903 1.00036 1.03177 1.21431 1.01518 0.90064 1.06831 1.18263 0.87687 0.87350 0.97413 1.44084 1.04562 1.04615 1.83066 1.20088 0.78566 0.91327 1.03935 1.21575 1.04404 0.98914 0.95807 1.23619 0.87956 0.90555 0.98093 1.68556 1.14402 1.07760 1.34737 1.25587 0.90642 1.00852 0.82595 1.68559 1.14337 1.14639 1.27911 1.23618 0.87954 0.88293 1.00349 1.66990 1.07330 1.29863 1.19161 1.21474 0.99477 0.84923 1.03566 0.92024 0.84320 0.82027 0.76551 0.89429 0.89459 0.79706 0.76416 0.79689 0.83411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.82 13.67 21.61 0.30 -55.52 16 2 C -0.03 -1.41 5.49 84.82 0.47 -0.94 16 3 Si 1.02 41.54 29.55 68.60 2.03 43.56 16 4 H -0.25 -9.12 7.11 99.48 0.71 -8.42 16 5 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 6 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 7 C -0.41 -22.77 9.50 67.91 0.64 -22.12 16 8 H 0.10 5.15 5.25 -2.91 -0.02 5.13 16 9 O -0.23 -13.33 9.77 -23.33 -0.23 -13.56 16 10 C 0.03 1.20 6.66 22.66 0.15 1.35 16 11 C -0.15 -5.99 9.25 22.55 0.21 -5.78 16 12 C -0.17 -5.39 9.32 22.49 0.21 -5.18 16 13 C 0.33 10.33 7.65 133.04 1.02 11.34 16 14 N -0.72 -15.91 5.73 -348.67 -2.00 -17.90 16 15 C 0.19 2.60 5.06 85.63 0.43 3.04 16 16 C -0.20 -2.75 5.28 -19.69 -0.10 -2.86 16 17 C 0.16 2.38 11.01 84.70 0.93 3.31 16 18 N -0.54 -9.27 10.44 -200.04 -2.09 -11.36 16 19 C 0.29 4.48 12.29 180.88 2.22 6.70 16 20 N -0.54 -9.25 10.44 -200.05 -2.09 -11.34 16 21 C 0.16 2.37 11.01 84.70 0.93 3.31 16 22 N -0.52 -19.69 10.39 -192.67 -2.00 -21.69 16 23 C 0.06 2.73 11.14 84.78 0.94 3.67 16 24 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 25 H 0.14 5.40 5.76 -2.91 -0.02 5.38 16 26 H 0.16 3.53 6.70 -2.91 -0.02 3.51 16 27 H 0.40 8.76 8.59 -92.71 -0.80 7.97 16 28 H 0.09 1.04 7.89 -2.39 -0.02 1.03 16 29 H 0.09 1.05 7.88 -2.39 -0.02 1.03 16 30 H 0.19 1.97 8.06 -2.91 -0.02 1.94 16 31 H 0.22 1.99 8.06 -2.91 -0.02 1.97 16 32 H 0.19 1.95 8.06 -2.91 -0.02 1.93 16 33 H 0.15 6.30 8.06 -2.91 -0.02 6.28 16 Total: -1.00 -72.47 297.57 2.35 -70.12 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: 0.37 Total: 21.85 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: 8.06 Total: -4.16 kcal Atomic # 7 Polarization: -109.94 SS G_CDS: -7.88 Total: -117.81 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: -0.23 Total: -13.56 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.56 kcal Total: -72.47 2.35 -70.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167258445.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.750 kcal (2) G-P(sol) polarization free energy of solvation -72.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds