Wall clock time and date at job start Mon Mar 30 2020 00:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31579 * 1 3 3 Si 1.86801 * 120.00267 * 2 1 4 4 H 1.48494 * 109.47270 * 89.99556 * 3 2 1 5 5 H 1.48496 * 109.47111 * 210.00201 * 3 2 1 6 6 H 1.48499 * 109.46811 * 329.99823 * 3 2 1 7 7 C 1.38633 * 119.99724 * 179.72156 * 2 1 3 8 8 H 1.08000 * 119.99988 * 180.02562 * 7 2 1 9 9 O 1.34813 * 119.99987 * 0.02562 * 7 2 1 10 10 C 1.35818 * 116.99829 * 174.94302 * 9 7 2 11 11 C 1.39454 * 120.40591 * 5.47607 * 10 9 7 12 12 C 1.38197 * 118.45169 * 179.97438 * 11 10 9 13 13 C 1.39174 * 119.17007 * 359.97438 * 12 11 10 14 14 N 1.39122 * 119.62944 * 180.02562 * 13 12 11 15 15 C 1.46501 * 120.00198 * 359.97438 * 14 13 12 16 16 C 1.50698 * 109.47192 * 180.02562 * 15 14 13 17 17 C 1.38611 * 120.07706 * 94.72770 * 16 15 14 18 18 C 1.38884 * 117.97157 * 179.74169 * 17 16 15 19 19 C 1.38611 * 117.96534 * 0.51766 * 18 17 16 20 20 N 1.31938 * 119.84710 * 359.73890 * 19 18 17 21 21 N 1.28345 * 122.18168 * 359.97438 * 20 19 18 22 22 N 1.32374 * 120.73650 * 0.02562 * 13 12 11 23 23 C 1.31932 * 121.69613 * 359.72653 * 22 13 12 24 24 H 0.97001 * 120.00238 * 180.02562 * 1 2 3 25 25 H 1.08006 * 120.77056 * 0.02562 * 11 10 9 26 26 H 1.08001 * 120.41987 * 179.97438 * 12 11 10 27 27 H 0.97001 * 120.00182 * 180.02562 * 14 13 12 28 28 H 1.08996 * 109.47253 * 300.00397 * 15 14 13 29 29 H 1.08997 * 109.47203 * 60.00671 * 15 14 13 30 30 H 1.08006 * 121.01329 * 359.97438 * 17 16 15 31 31 H 1.08000 * 121.01800 * 180.23290 * 18 17 16 32 32 H 1.08000 * 120.07288 * 179.75319 * 19 18 17 33 33 H 1.07998 * 119.62630 * 180.26506 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 2.4973 2.0464 1.4000 5 1 3.5474 1.4401 -0.7001 6 1 1.4473 2.6526 -0.7001 7 6 2.0089 -1.2006 0.0058 8 1 3.0889 -1.2007 0.0063 9 8 1.3348 -2.3681 0.0110 10 6 2.0704 -3.5053 -0.0901 11 6 3.4637 -3.4479 -0.0789 12 6 4.1722 -4.6298 -0.1837 13 6 3.4766 -5.8300 -0.2956 14 7 4.1803 -7.0256 -0.4011 15 6 5.6452 -7.0164 -0.3945 16 6 6.1570 -8.4282 -0.5210 17 6 6.4906 -8.9372 -1.7664 18 6 6.9629 -10.2416 -1.8317 19 6 7.0612 -10.9574 -0.6488 20 7 6.7150 -10.3915 0.4917 21 7 6.2838 -9.1842 0.5527 22 7 2.1530 -5.8467 -0.3029 23 6 1.4452 -4.7381 -0.1999 24 1 -0.4850 -0.8400 0.0004 25 1 3.9771 -2.5019 0.0105 26 1 5.2522 -4.6223 -0.1787 27 1 3.7009 -7.8652 -0.4798 28 1 6.0086 -6.4221 -1.2328 29 1 6.0016 -6.5828 0.5398 30 1 6.3899 -8.3364 -2.6583 31 1 7.2408 -10.6862 -2.7759 32 1 7.4205 -11.9758 -0.6607 33 1 0.3665 -4.7910 -0.2052 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167324471.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:58 Heat of formation + Delta-G solvation = 74.122320 kcal Electronic energy + Delta-G solvation = -18955.743921 eV Core-core repulsion = 15790.141040 eV Total energy + Delta-G solvation = -3165.602881 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.38823 -39.67923 -37.54655 -35.71381 -33.54087 -32.83829 -32.16161 -31.30999 -28.67043 -26.50057 -24.98821 -24.85756 -23.53821 -22.41498 -21.35515 -18.55610 -17.86476 -17.64880 -17.27494 -16.48509 -16.18074 -15.49552 -15.17715 -14.47365 -14.41434 -14.05868 -13.82814 -13.77885 -13.61381 -13.45259 -12.95998 -12.52381 -12.26666 -11.93655 -11.23446 -10.92107 -10.65819 -10.56289 -10.33106 -10.32277 -10.04714 -9.78286 -9.44251 -9.04307 -8.81169 -8.56273 -6.80342 -6.74986 -4.03545 0.40753 0.44062 1.93720 2.31559 3.03741 3.23377 3.29681 3.42694 3.51731 3.74476 4.05888 4.12282 4.17485 4.29014 4.54866 4.60116 4.77999 5.08231 5.10524 5.19299 5.28550 5.35437 5.44075 5.63468 5.70776 5.77546 5.83486 5.87603 6.40864 6.65274 6.99855 7.03755 7.43832 7.51936 7.95875 8.34750 8.39857 8.78794 8.93352 9.61030 10.68533 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.045966 B = 0.003042 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.001598 B = 9201.421533 C = 9533.586478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.010 3.990 3 Si 1.098 2.902 4 H -0.281 1.281 5 H -0.283 1.283 6 H -0.276 1.276 7 C -0.471 4.471 8 H 0.081 0.919 9 O -0.201 6.201 10 C 0.069 3.931 11 C -0.151 4.151 12 C -0.182 4.182 13 C 0.312 3.688 14 N -0.734 5.734 15 C 0.194 3.806 16 C 0.058 3.942 17 C -0.101 4.101 18 C -0.120 4.120 19 C 0.039 3.961 20 N -0.243 5.243 21 N -0.224 5.224 22 N -0.499 5.499 23 C 0.067 3.933 24 H 0.283 0.717 25 H 0.138 0.862 26 H 0.118 0.882 27 H 0.397 0.603 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.154 0.846 31 H 0.152 0.848 32 H 0.173 0.827 33 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.917 -16.197 -5.369 22.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.196 4.196 3 Si 0.923 3.077 4 H -0.207 1.207 5 H -0.209 1.209 6 H -0.201 1.201 7 C -0.548 4.548 8 H 0.098 0.902 9 O -0.106 6.106 10 C 0.014 3.986 11 C -0.178 4.178 12 C -0.207 4.207 13 C 0.080 3.920 14 N -0.374 5.374 15 C 0.067 3.933 16 C -0.087 4.087 17 C -0.131 4.131 18 C -0.149 4.149 19 C -0.125 4.125 20 N -0.084 5.084 21 N -0.067 5.067 22 N -0.215 5.215 23 C -0.092 4.092 24 H 0.093 0.907 25 H 0.156 0.844 26 H 0.136 0.864 27 H 0.231 0.769 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.172 0.828 31 H 0.170 0.830 32 H 0.190 0.810 33 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 14.031 -15.292 -3.753 21.090 hybrid contribution 0.894 -1.228 -1.605 2.210 sum 14.925 -16.520 -5.358 22.899 Atomic orbital electron populations 1.70546 1.06530 1.31697 1.42733 1.26493 0.96865 1.01039 0.95172 0.83057 0.74122 0.73183 0.77375 1.20734 1.20906 1.20075 1.22159 0.92900 0.82310 1.57414 0.90182 1.83679 1.34685 1.11704 1.80492 1.20100 0.90843 0.88996 0.98677 1.21417 0.93842 0.98559 1.03973 1.21100 0.99565 0.91525 1.08463 1.17800 0.88115 0.85501 1.00584 1.43678 1.02733 1.06011 1.85019 1.19866 0.81483 0.88915 1.03013 1.22905 0.96701 0.98220 0.90868 1.22407 0.95347 0.96117 0.99185 1.22476 0.97135 0.94664 1.00635 1.24412 0.96179 1.01935 0.90005 1.73122 1.06744 1.03696 1.24836 1.73051 1.07487 0.99161 1.26978 1.66878 1.06026 1.30742 1.17870 1.21418 0.99052 0.84843 1.03913 0.90720 0.84425 0.86370 0.76866 0.90522 0.90224 0.82848 0.82997 0.80978 0.83211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.19 13.70 55.48 0.76 -25.43 16 2 C 0.01 0.26 5.49 -17.51 -0.10 0.17 16 3 Si 1.10 23.47 29.92 -169.99 -5.09 18.39 16 4 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 6 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.47 -13.06 9.50 30.88 0.29 -12.77 16 8 H 0.08 2.07 5.25 -52.49 -0.28 1.80 16 9 O -0.20 -5.58 9.17 -0.11 0.00 -5.58 16 10 C 0.07 1.65 6.67 -38.97 -0.26 1.39 16 11 C -0.15 -3.22 9.25 -39.14 -0.36 -3.58 16 12 C -0.18 -3.30 9.32 -39.25 -0.37 -3.66 16 13 C 0.31 5.68 7.65 -154.91 -1.19 4.49 16 14 N -0.73 -10.55 5.73 -61.56 -0.35 -10.90 16 15 C 0.19 2.16 5.22 -5.19 -0.03 2.14 16 16 C 0.06 0.61 6.23 -82.41 -0.51 0.09 16 17 C -0.10 -0.75 9.86 -39.20 -0.39 -1.14 16 18 C -0.12 -0.71 10.21 -39.20 -0.40 -1.11 16 19 C 0.04 0.29 11.31 -17.37 -0.20 0.09 16 20 N -0.24 -2.84 11.50 30.55 0.35 -2.49 16 21 N -0.22 -2.87 11.43 33.59 0.38 -2.49 16 22 N -0.50 -10.13 10.38 -12.25 -0.13 -10.26 16 23 C 0.07 1.45 11.14 -17.35 -0.19 1.25 16 24 H 0.28 8.56 7.97 -40.82 -0.33 8.24 16 25 H 0.14 2.90 5.76 -52.48 -0.30 2.60 16 26 H 0.12 1.73 6.70 -52.49 -0.35 1.38 16 27 H 0.40 5.64 8.59 -40.82 -0.35 5.28 16 28 H 0.08 0.71 7.84 -51.93 -0.41 0.30 16 29 H 0.08 0.93 7.92 -51.93 -0.41 0.52 16 30 H 0.15 0.79 8.06 -52.48 -0.42 0.37 16 31 H 0.15 0.37 8.06 -52.49 -0.42 -0.05 16 32 H 0.17 0.68 8.06 -52.49 -0.42 0.26 16 33 H 0.15 3.02 8.06 -52.49 -0.42 2.60 16 LS Contribution 297.26 15.07 4.48 4.48 Total: -1.00 -33.43 297.26 -6.20 -39.63 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -2.91 Total: 7.29 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: -3.69 Total: -12.63 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: 1.02 Total: -51.57 kcal Atomic # 8 Polarization: -5.58 SS G_CDS: 0.00 Total: -5.58 kcal Atomic # 14 Polarization: 23.47 SS G_CDS: -5.09 Total: 18.39 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -33.43 -6.20 -39.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167324471.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.752 kcal (2) G-P(sol) polarization free energy of solvation -33.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds