Wall clock time and date at job start Mon Mar 30 2020 00:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31579 * 1 3 3 Si 1.86801 * 120.00267 * 2 1 4 4 H 1.48494 * 109.47270 * 89.99556 * 3 2 1 5 5 H 1.48496 * 109.47111 * 210.00201 * 3 2 1 6 6 H 1.48499 * 109.46811 * 329.99823 * 3 2 1 7 7 C 1.38633 * 119.99724 * 179.72156 * 2 1 3 8 8 H 1.08000 * 119.99988 * 180.02562 * 7 2 1 9 9 O 1.34813 * 119.99987 * 0.02562 * 7 2 1 10 10 C 1.35818 * 116.99829 * 174.94302 * 9 7 2 11 11 C 1.39454 * 120.40591 * 5.47607 * 10 9 7 12 12 C 1.38197 * 118.45169 * 179.97438 * 11 10 9 13 13 C 1.39174 * 119.17007 * 359.97438 * 12 11 10 14 14 N 1.39122 * 119.62944 * 180.02562 * 13 12 11 15 15 C 1.46501 * 120.00198 * 359.97438 * 14 13 12 16 16 C 1.50698 * 109.47192 * 180.02562 * 15 14 13 17 17 C 1.38611 * 120.07706 * 94.72770 * 16 15 14 18 18 C 1.38884 * 117.97157 * 179.74169 * 17 16 15 19 19 C 1.38611 * 117.96534 * 0.51766 * 18 17 16 20 20 N 1.31938 * 119.84710 * 359.73890 * 19 18 17 21 21 N 1.28345 * 122.18168 * 359.97438 * 20 19 18 22 22 N 1.32374 * 120.73650 * 0.02562 * 13 12 11 23 23 C 1.31932 * 121.69613 * 359.72653 * 22 13 12 24 24 H 0.97001 * 120.00238 * 180.02562 * 1 2 3 25 25 H 1.08006 * 120.77056 * 0.02562 * 11 10 9 26 26 H 1.08001 * 120.41987 * 179.97438 * 12 11 10 27 27 H 0.97001 * 120.00182 * 180.02562 * 14 13 12 28 28 H 1.08996 * 109.47253 * 300.00397 * 15 14 13 29 29 H 1.08997 * 109.47203 * 60.00671 * 15 14 13 30 30 H 1.08006 * 121.01329 * 359.97438 * 17 16 15 31 31 H 1.08000 * 121.01800 * 180.23290 * 18 17 16 32 32 H 1.08000 * 120.07288 * 179.75319 * 19 18 17 33 33 H 1.07998 * 119.62630 * 180.26506 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 2.4973 2.0464 1.4000 5 1 3.5474 1.4401 -0.7001 6 1 1.4473 2.6526 -0.7001 7 6 2.0089 -1.2006 0.0058 8 1 3.0889 -1.2007 0.0063 9 8 1.3348 -2.3681 0.0110 10 6 2.0704 -3.5053 -0.0901 11 6 3.4637 -3.4479 -0.0789 12 6 4.1722 -4.6298 -0.1837 13 6 3.4766 -5.8300 -0.2956 14 7 4.1803 -7.0256 -0.4011 15 6 5.6452 -7.0164 -0.3945 16 6 6.1570 -8.4282 -0.5210 17 6 6.4906 -8.9372 -1.7664 18 6 6.9629 -10.2416 -1.8317 19 6 7.0612 -10.9574 -0.6488 20 7 6.7150 -10.3915 0.4917 21 7 6.2838 -9.1842 0.5527 22 7 2.1530 -5.8467 -0.3029 23 6 1.4452 -4.7381 -0.1999 24 1 -0.4850 -0.8400 0.0004 25 1 3.9771 -2.5019 0.0105 26 1 5.2522 -4.6223 -0.1787 27 1 3.7009 -7.8652 -0.4798 28 1 6.0086 -6.4221 -1.2328 29 1 6.0016 -6.5828 0.5398 30 1 6.3899 -8.3364 -2.6583 31 1 7.2408 -10.6862 -2.7759 32 1 7.4205 -11.9758 -0.6607 33 1 0.3665 -4.7910 -0.2052 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167324471.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:57 Heat of formation + Delta-G solvation = 49.731972 kcal Electronic energy + Delta-G solvation = -18956.801566 eV Core-core repulsion = 15790.141040 eV Total energy + Delta-G solvation = -3166.660526 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.06498 -41.33309 -39.27352 -36.92417 -34.38431 -34.11556 -33.56117 -32.96832 -30.06011 -27.70207 -26.73426 -25.60634 -24.77306 -23.74594 -22.83485 -20.40755 -19.20879 -18.50164 -18.10245 -17.80824 -17.66994 -16.61174 -16.10758 -15.98411 -15.77692 -15.53600 -15.31901 -15.11561 -14.90102 -14.25304 -14.19004 -13.92825 -13.64947 -13.57412 -12.56929 -12.42534 -11.93329 -11.89475 -11.70931 -11.21731 -11.07524 -11.02632 -10.72735 -10.61593 -10.45962 -10.36048 -8.88723 -8.37790 -6.15883 -0.18479 -0.15799 0.29544 0.64851 1.52592 1.65836 1.80487 2.10805 2.40007 2.68346 2.88373 2.92289 3.16066 3.36495 3.44981 3.67051 3.74930 3.82993 4.01253 4.03672 4.19174 4.24469 4.30259 4.44714 4.59351 4.81774 4.84118 4.96044 5.08259 5.26605 5.29642 5.39935 5.51365 6.09536 6.26202 6.57821 6.91230 7.21742 7.67868 7.68006 8.57082 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.045966 B = 0.003042 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.001598 B = 9201.421533 C = 9533.586478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.046 4.046 3 Si 1.147 2.853 4 H -0.267 1.267 5 H -0.256 1.256 6 H -0.276 1.276 7 C -0.484 4.484 8 H 0.093 0.907 9 O -0.248 6.248 10 C 0.027 3.973 11 C -0.146 4.146 12 C -0.175 4.175 13 C 0.332 3.668 14 N -0.721 5.721 15 C 0.190 3.810 16 C 0.045 3.955 17 C -0.101 4.101 18 C -0.104 4.104 19 C 0.039 3.961 20 N -0.287 5.287 21 N -0.269 5.269 22 N -0.515 5.515 23 C 0.066 3.934 24 H 0.261 0.739 25 H 0.139 0.861 26 H 0.162 0.838 27 H 0.400 0.600 28 H 0.106 0.894 29 H 0.076 0.924 30 H 0.181 0.819 31 H 0.196 0.804 32 H 0.206 0.794 33 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.408 -17.943 -6.959 26.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.242 4.242 3 Si 0.963 3.037 4 H -0.192 1.192 5 H -0.180 1.180 6 H -0.201 1.201 7 C -0.560 4.560 8 H 0.110 0.890 9 O -0.155 6.155 10 C -0.025 4.025 11 C -0.173 4.173 12 C -0.200 4.200 13 C 0.097 3.903 14 N -0.360 5.360 15 C 0.064 3.936 16 C -0.101 4.101 17 C -0.130 4.130 18 C -0.133 4.133 19 C -0.125 4.125 20 N -0.127 5.127 21 N -0.111 5.111 22 N -0.232 5.232 23 C -0.091 4.091 24 H 0.069 0.931 25 H 0.157 0.843 26 H 0.179 0.821 27 H 0.234 0.766 28 H 0.124 0.876 29 H 0.094 0.906 30 H 0.198 0.802 31 H 0.213 0.787 32 H 0.222 0.778 33 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 17.572 -17.129 -5.332 25.112 hybrid contribution 0.056 -1.183 -1.181 1.672 sum 17.628 -18.312 -6.513 26.239 Atomic orbital electron populations 1.70684 1.07821 1.30159 1.46999 1.28326 0.96909 1.04861 0.94118 0.82541 0.73920 0.68827 0.78401 1.19191 1.17992 1.20148 1.22576 0.93650 0.82901 1.56878 0.88978 1.83659 1.35934 1.12553 1.83378 1.20498 0.92207 0.88622 1.01198 1.21604 0.92968 0.99950 1.02774 1.21430 1.01570 0.90016 1.06945 1.18221 0.87752 0.87090 0.97234 1.43895 1.04314 1.04695 1.83058 1.20111 0.78997 0.90424 1.04029 1.22825 0.97805 0.97644 0.91866 1.22745 0.94446 0.97068 0.98752 1.22968 0.94883 0.93772 1.01691 1.25025 0.94617 1.03294 0.89584 1.73006 1.08646 1.03728 1.27307 1.72918 1.09273 1.00168 1.28738 1.66986 1.07173 1.29854 1.19226 1.21517 0.99587 0.84716 1.03309 0.93062 0.84303 0.82081 0.76587 0.87571 0.90606 0.80166 0.78733 0.77764 0.82981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.37 13.70 21.61 0.30 -57.07 16 2 C -0.05 -2.62 5.49 84.82 0.47 -2.16 16 3 Si 1.15 47.33 29.92 68.60 2.05 49.39 16 4 H -0.27 -10.27 7.11 99.48 0.71 -9.57 16 5 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 6 H -0.28 -11.30 7.11 99.48 0.71 -10.60 16 7 C -0.48 -27.62 9.50 67.91 0.64 -26.97 16 8 H 0.09 4.81 5.25 -2.91 -0.02 4.79 16 9 O -0.25 -14.45 9.17 -23.31 -0.21 -14.66 16 10 C 0.03 1.34 6.67 22.67 0.15 1.49 16 11 C -0.15 -6.11 9.25 22.55 0.21 -5.90 16 12 C -0.18 -5.86 9.32 22.49 0.21 -5.65 16 13 C 0.33 11.33 7.65 133.04 1.02 12.35 16 14 N -0.72 -18.68 5.73 -348.69 -2.00 -20.67 16 15 C 0.19 3.59 5.22 85.63 0.45 4.04 16 16 C 0.04 0.81 6.23 42.63 0.27 1.08 16 17 C -0.10 -1.08 9.86 22.51 0.22 -0.86 16 18 C -0.10 -0.76 10.21 22.51 0.23 -0.53 16 19 C 0.04 0.46 11.31 84.77 0.96 1.42 16 20 N -0.29 -6.28 11.50 -57.25 -0.66 -6.94 16 21 N -0.27 -6.54 11.43 -47.63 -0.54 -7.09 16 22 N -0.51 -20.50 10.38 -192.67 -2.00 -22.50 16 23 C 0.07 2.92 11.14 84.78 0.94 3.86 16 24 H 0.26 16.93 7.97 -92.71 -0.74 16.19 16 25 H 0.14 5.72 5.76 -2.91 -0.02 5.70 16 26 H 0.16 3.97 6.70 -2.91 -0.02 3.95 16 27 H 0.40 10.39 8.59 -92.71 -0.80 9.59 16 28 H 0.11 1.44 7.84 -2.39 -0.02 1.42 16 29 H 0.08 1.54 7.92 -2.39 -0.02 1.52 16 30 H 0.18 0.88 8.06 -2.91 -0.02 0.86 16 31 H 0.20 -0.28 8.06 -2.91 -0.02 -0.30 16 32 H 0.21 0.83 8.06 -2.91 -0.02 0.80 16 33 H 0.15 6.44 8.06 -2.91 -0.02 6.42 16 Total: -1.00 -78.28 297.26 3.10 -75.18 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: 0.40 Total: 22.21 kcal Atomic # 6 Polarization: -23.60 SS G_CDS: 5.77 Total: -17.83 kcal Atomic # 7 Polarization: -109.38 SS G_CDS: -4.90 Total: -114.28 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: -0.21 Total: -14.66 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 2.05 Total: 49.39 kcal Total: -78.28 3.10 -75.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167324471.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.907 kcal (2) G-P(sol) polarization free energy of solvation -78.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds