Wall clock time and date at job start Mon Mar 30 2020 00:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00117 * 2 1 4 4 H 1.48500 * 109.47239 * 240.00057 * 3 2 1 5 5 H 1.48502 * 109.46836 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47218 * 119.99694 * 3 2 1 7 7 C 1.37885 * 120.00148 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99902 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99824 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46792 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46767 * 179.97438 * 10 9 7 12 12 N 1.46501 * 109.47008 * 180.02562 * 11 10 9 13 13 C 1.39026 * 119.99764 * 180.02562 * 12 11 10 14 14 C 1.38904 * 119.67854 * 0.02562 * 13 12 11 15 15 C 1.38911 * 119.02803 * 180.23501 * 14 13 12 16 16 O 1.35745 * 120.80343 * 179.72373 * 15 14 13 17 17 C 1.42903 * 117.00274 * 179.97438 * 16 15 14 18 18 F 1.39903 * 109.46871 * 300.00118 * 17 16 15 19 19 F 1.39894 * 109.46737 * 59.99929 * 17 16 15 20 20 C 1.39493 * 118.39137 * 359.47809 * 15 14 13 21 21 C 1.37798 * 119.25612 * 0.54350 * 20 15 14 22 22 N 1.32057 * 120.91712 * 359.70033 * 21 20 15 23 23 H 0.96998 * 120.00271 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.46795 * 60.00084 * 9 7 2 25 25 H 1.08998 * 109.47015 * 300.00095 * 9 7 2 26 26 H 1.09003 * 109.46904 * 60.00736 * 10 9 7 27 27 H 1.08994 * 109.47402 * 300.00132 * 10 9 7 28 28 H 1.09000 * 109.47289 * 60.00308 * 11 10 9 29 29 H 1.09003 * 109.47576 * 300.00891 * 11 10 9 30 30 H 0.96994 * 120.00016 * 0.02562 * 12 11 10 31 31 H 1.08002 * 120.48223 * 359.95056 * 14 13 12 32 32 H 1.08996 * 109.47487 * 179.97438 * 17 16 15 33 33 H 1.08001 * 120.36708 * 180.25987 * 20 15 14 34 34 H 1.08003 * 119.54250 * 179.72011 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4324 -6.1006 0.0018 13 6 1.9689 -7.4113 0.0019 14 6 0.6019 -7.6574 0.0009 15 6 0.1537 -8.9723 0.0060 16 8 -1.1742 -9.2540 0.0108 17 6 -1.5446 -10.6342 0.0153 18 9 -1.0320 -11.2583 -1.1271 19 9 -1.0249 -11.2527 1.1575 20 6 1.1012 -9.9960 0.0008 21 6 2.4409 -9.6737 0.0022 22 7 2.8356 -8.4135 0.0025 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6241 -2.5567 0.8903 26 1 2.8719 -3.6043 0.8906 27 1 2.8720 -3.6043 -0.8894 28 1 0.8534 -5.0451 -0.8886 29 1 0.8538 -5.0446 0.8913 30 1 3.3860 -5.9234 0.0021 31 1 -0.1022 -6.8385 0.0008 32 1 -2.6313 -10.7188 0.0194 33 1 0.7881 -11.0297 0.0003 34 1 3.1785 -10.4627 0.0028 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168435394.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:11 Heat of formation + Delta-G solvation = -120.100387 kcal Electronic energy + Delta-G solvation = -19884.845881 eV Core-core repulsion = 16260.131685 eV Total energy + Delta-G solvation = -3624.714196 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.108 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.65244 -47.65434 -40.54918 -38.54744 -36.24512 -33.63071 -31.75150 -31.52301 -29.41523 -26.68552 -26.36576 -23.99351 -22.87950 -22.01191 -20.48171 -19.26131 -18.60267 -18.23544 -17.11080 -16.50859 -16.12696 -15.51543 -15.24289 -14.99464 -14.75427 -14.48551 -14.27881 -14.23966 -14.07043 -13.98499 -13.35794 -13.35110 -12.68752 -12.31958 -12.00531 -11.84301 -11.61603 -10.93821 -10.75501 -10.62900 -10.19668 -9.75132 -9.56857 -9.50030 -9.23488 -9.18518 -8.40190 -7.68386 -6.05314 -4.08257 1.25225 1.37230 2.18821 3.11262 3.30848 3.32920 3.35465 3.38720 3.85461 3.95919 4.30990 4.42170 4.59030 4.78624 4.98379 5.14072 5.30776 5.45202 5.55456 5.63892 5.74922 5.97394 6.03470 6.15161 6.51626 6.53498 6.76593 6.91720 7.13226 7.58009 7.70136 7.70287 7.92871 8.22646 8.34683 8.97906 9.56214 11.05965 Molecular weight = 272.11amu Principal moments of inertia in cm(-1) A = 0.036203 B = 0.002944 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.224288 B = 9508.910788 C =10091.728702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.025 3.975 10 C -0.121 4.121 11 C 0.120 3.880 12 N -0.712 5.712 13 C 0.436 3.564 14 C -0.259 4.259 15 C 0.186 3.814 16 O -0.316 6.316 17 C 0.413 3.587 18 F -0.197 7.197 19 F -0.198 7.198 20 C -0.314 4.314 21 C 0.184 3.816 22 N -0.562 5.562 23 H 0.262 0.738 24 H 0.019 0.981 25 H 0.019 0.981 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.407 0.593 31 H 0.144 0.856 32 H 0.183 0.817 33 H 0.136 0.864 34 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.508 -22.799 0.027 22.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.159 4.159 11 C -0.003 4.003 12 N -0.341 5.341 13 C 0.199 3.801 14 C -0.285 4.285 15 C 0.135 3.865 16 O -0.232 6.232 17 C 0.323 3.677 18 F -0.179 7.179 19 F -0.179 7.179 20 C -0.338 4.338 21 C 0.025 3.975 22 N -0.283 5.283 23 H 0.072 0.928 24 H 0.037 0.963 25 H 0.037 0.963 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.243 0.757 31 H 0.162 0.838 32 H 0.199 0.801 33 H 0.154 0.846 34 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -2.104 -22.180 0.028 22.280 hybrid contribution -0.039 0.479 0.000 0.481 sum -2.143 -21.701 0.028 21.807 Atomic orbital electron populations 1.69942 1.06062 1.26859 1.50491 1.25019 0.94866 0.99313 0.95184 0.86633 0.79572 0.83003 0.78654 1.20214 1.21251 1.20206 1.21169 0.93028 0.90920 1.51103 0.92649 1.19025 0.93793 0.90844 0.97589 1.21876 0.99859 0.92858 1.01267 1.21784 0.91994 0.85289 1.01265 1.44917 1.10189 1.01104 1.77927 1.18106 0.87647 0.86311 0.88067 1.20614 0.95496 0.95004 1.17394 1.18772 0.81136 0.94008 0.92632 1.86607 1.23320 1.25395 1.87869 1.23382 0.97074 0.75346 0.71863 1.93105 1.89849 1.82977 1.51996 1.93104 1.89632 1.83204 1.51993 1.22039 0.95001 0.99241 1.17506 1.22132 0.93356 0.92165 0.89800 1.67276 1.38175 0.99633 1.23190 0.92847 0.96272 0.96259 0.92502 0.92493 0.91903 0.91909 0.75733 0.83800 0.80103 0.84594 0.82447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 7 C -0.52 -14.48 9.11 -34.44 -0.31 -14.79 16 8 H 0.06 1.48 7.74 -52.48 -0.41 1.08 16 9 C 0.03 0.62 4.97 -27.88 -0.14 0.48 16 10 C -0.12 -2.31 5.27 -26.73 -0.14 -2.45 16 11 C 0.12 1.95 4.89 -4.04 -0.02 1.93 16 12 N -0.71 -10.72 5.73 -60.46 -0.35 -11.07 16 13 C 0.44 6.66 7.65 -155.01 -1.19 5.47 16 14 C -0.26 -3.78 9.29 -39.09 -0.36 -4.15 16 15 C 0.19 2.48 6.51 -38.86 -0.25 2.22 16 16 O -0.32 -3.55 10.44 -18.94 -0.20 -3.75 16 17 C 0.41 3.14 5.98 101.05 0.60 3.75 16 18 F -0.20 -1.79 15.62 2.25 0.04 -1.75 16 19 F -0.20 -1.79 15.64 2.25 0.04 -1.75 16 20 C -0.31 -3.83 8.33 -39.28 -0.33 -4.15 16 21 C 0.18 2.27 11.17 -17.62 -0.20 2.07 16 22 N -0.56 -8.31 10.39 -12.51 -0.13 -8.44 16 23 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 24 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.06 1.01 7.92 -51.93 -0.41 0.60 16 29 H 0.06 1.01 7.93 -51.93 -0.41 0.60 16 30 H 0.41 5.79 8.60 -40.82 -0.35 5.44 16 31 H 0.14 2.04 6.70 -52.49 -0.35 1.69 16 32 H 0.18 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.14 1.45 5.27 -52.49 -0.28 1.18 16 34 H 0.16 1.40 8.06 -52.48 -0.42 0.98 16 LS Contribution 301.83 15.07 4.55 4.55 Total: -1.00 -31.55 301.83 -6.65 -38.20 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -3.88 Total: 1.45 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: -2.43 Total: -8.09 kcal Atomic # 7 Polarization: -45.44 SS G_CDS: 0.26 Total: -45.18 kcal Atomic # 8 Polarization: -3.55 SS G_CDS: -0.20 Total: -3.75 kcal Atomic # 9 Polarization: -3.58 SS G_CDS: 0.07 Total: -3.50 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.55 -6.65 -38.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168435394.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.901 kcal (2) G-P(sol) polarization free energy of solvation -31.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds