Wall clock time and date at job start Mon Mar 30 2020 00:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00117 * 2 1 4 4 H 1.48500 * 109.47239 * 240.00057 * 3 2 1 5 5 H 1.48502 * 109.46836 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47218 * 119.99694 * 3 2 1 7 7 C 1.37885 * 120.00148 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99902 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99824 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46792 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46767 * 179.97438 * 10 9 7 12 12 N 1.46501 * 109.47008 * 180.02562 * 11 10 9 13 13 C 1.39026 * 119.99764 * 180.02562 * 12 11 10 14 14 C 1.38904 * 119.67854 * 0.02562 * 13 12 11 15 15 C 1.38911 * 119.02803 * 180.23501 * 14 13 12 16 16 O 1.35745 * 120.80343 * 179.72373 * 15 14 13 17 17 C 1.42903 * 117.00274 * 179.97438 * 16 15 14 18 18 F 1.39903 * 109.46871 * 300.00118 * 17 16 15 19 19 F 1.39894 * 109.46737 * 59.99929 * 17 16 15 20 20 C 1.39493 * 118.39137 * 359.47809 * 15 14 13 21 21 C 1.37798 * 119.25612 * 0.54350 * 20 15 14 22 22 N 1.32057 * 120.91712 * 359.70033 * 21 20 15 23 23 H 0.96998 * 120.00271 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.46795 * 60.00084 * 9 7 2 25 25 H 1.08998 * 109.47015 * 300.00095 * 9 7 2 26 26 H 1.09003 * 109.46904 * 60.00736 * 10 9 7 27 27 H 1.08994 * 109.47402 * 300.00132 * 10 9 7 28 28 H 1.09000 * 109.47289 * 60.00308 * 11 10 9 29 29 H 1.09003 * 109.47576 * 300.00891 * 11 10 9 30 30 H 0.96994 * 120.00016 * 0.02562 * 12 11 10 31 31 H 1.08002 * 120.48223 * 359.95056 * 14 13 12 32 32 H 1.08996 * 109.47487 * 179.97438 * 17 16 15 33 33 H 1.08001 * 120.36708 * 180.25987 * 20 15 14 34 34 H 1.08003 * 119.54250 * 179.72011 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4324 -6.1006 0.0018 13 6 1.9689 -7.4113 0.0019 14 6 0.6019 -7.6574 0.0009 15 6 0.1537 -8.9723 0.0060 16 8 -1.1742 -9.2540 0.0108 17 6 -1.5446 -10.6342 0.0153 18 9 -1.0320 -11.2583 -1.1271 19 9 -1.0249 -11.2527 1.1575 20 6 1.1012 -9.9960 0.0008 21 6 2.4409 -9.6737 0.0022 22 7 2.8356 -8.4135 0.0025 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6241 -2.5567 0.8903 26 1 2.8719 -3.6043 0.8906 27 1 2.8720 -3.6043 -0.8894 28 1 0.8534 -5.0451 -0.8886 29 1 0.8538 -5.0446 0.8913 30 1 3.3860 -5.9234 0.0021 31 1 -0.1022 -6.8385 0.0008 32 1 -2.6313 -10.7188 0.0194 33 1 0.7881 -11.0297 0.0003 34 1 3.1785 -10.4627 0.0028 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168435394.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:11 Heat of formation + Delta-G solvation = -140.337339 kcal Electronic energy + Delta-G solvation = -19885.723421 eV Core-core repulsion = 16260.131685 eV Total energy + Delta-G solvation = -3625.591736 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.108 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.30668 -48.31414 -41.54888 -39.48273 -37.55549 -35.46880 -33.38910 -32.60976 -30.71169 -28.22288 -27.21579 -25.42462 -24.15071 -23.15131 -22.09262 -20.18618 -19.37555 -18.90908 -18.50345 -18.06420 -17.24291 -16.55321 -16.49599 -16.47607 -15.91223 -15.80171 -15.40652 -15.06662 -15.03172 -14.69044 -14.46362 -14.38271 -14.11267 -13.69959 -13.56905 -13.34774 -12.75923 -12.65270 -12.44436 -12.35914 -11.79103 -11.47954 -11.21854 -11.08336 -10.59509 -10.54395 -10.25259 -8.81163 -8.19999 -6.30656 0.22990 0.32913 1.41508 1.43889 1.44746 1.51781 2.15815 2.42483 2.52104 2.81703 3.13872 3.46491 3.68106 3.71005 3.81346 4.02538 4.07198 4.14036 4.20621 4.41608 4.57165 4.76151 4.93858 4.95722 4.99451 5.15347 5.23535 5.50420 5.71653 5.75108 5.84184 5.97000 6.24021 6.57449 6.85893 7.14923 7.38568 8.91587 Molecular weight = 272.11amu Principal moments of inertia in cm(-1) A = 0.036203 B = 0.002944 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.224288 B = 9508.910788 C =10091.728702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.963 3.037 4 H -0.268 1.268 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.545 4.545 8 H 0.061 0.939 9 C 0.027 3.973 10 C -0.104 4.104 11 C 0.137 3.863 12 N -0.712 5.712 13 C 0.422 3.578 14 C -0.279 4.279 15 C 0.182 3.818 16 O -0.326 6.326 17 C 0.408 3.592 18 F -0.206 7.206 19 F -0.206 7.206 20 C -0.310 4.310 21 C 0.181 3.819 22 N -0.578 5.578 23 H 0.264 0.736 24 H -0.002 1.002 25 H -0.002 1.002 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.410 0.590 31 H 0.140 0.860 32 H 0.237 0.763 33 H 0.153 0.847 34 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.952 -23.947 0.030 24.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.788 3.212 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.583 4.583 8 H 0.079 0.921 9 C -0.011 4.011 10 C -0.142 4.142 11 C 0.013 3.987 12 N -0.343 5.343 13 C 0.186 3.814 14 C -0.305 4.305 15 C 0.130 3.870 16 O -0.242 6.242 17 C 0.319 3.681 18 F -0.188 7.188 19 F -0.188 7.188 20 C -0.334 4.334 21 C 0.024 3.976 22 N -0.300 5.300 23 H 0.073 0.927 24 H 0.016 0.984 25 H 0.016 0.984 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.247 0.753 31 H 0.158 0.842 32 H 0.253 0.747 33 H 0.170 0.830 34 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -1.541 -23.366 0.031 23.417 hybrid contribution -0.272 0.692 -0.001 0.743 sum -1.813 -22.674 0.030 22.746 Atomic orbital electron populations 1.70073 1.07717 1.27866 1.51515 1.25948 0.95757 1.03276 0.94749 0.85528 0.78288 0.78254 0.79147 1.19244 1.20928 1.19232 1.21660 0.93630 0.92320 1.50734 0.92066 1.18915 0.94285 0.92415 0.95460 1.21584 0.98645 0.92323 1.01680 1.21419 0.91631 0.84437 1.01231 1.44672 1.09978 1.00934 1.78739 1.18210 0.88088 0.86327 0.88792 1.20684 0.95361 0.95820 1.18671 1.18927 0.82401 0.93837 0.91836 1.86614 1.22099 1.27957 1.87556 1.24327 0.99201 0.73529 0.71027 1.93087 1.90195 1.82965 1.52509 1.93085 1.89984 1.83190 1.52506 1.22274 0.94861 0.99755 1.16488 1.22748 0.94352 0.92072 0.88458 1.67309 1.38398 1.00381 1.23863 0.92741 0.98406 0.98392 0.92032 0.92024 0.92031 0.92038 0.75348 0.84250 0.74692 0.82995 0.79029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.90 13.29 21.45 0.28 -55.62 16 2 C 0.00 0.04 5.46 84.66 0.46 0.50 16 3 Si 0.96 43.71 29.54 68.60 2.03 45.73 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 7 C -0.55 -30.38 9.11 25.60 0.23 -30.15 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 9 C 0.03 1.36 4.97 29.85 0.15 1.51 16 10 C -0.10 -4.01 5.27 30.59 0.16 -3.85 16 11 C 0.14 4.48 4.89 86.38 0.42 4.90 16 12 N -0.71 -21.32 5.73 -345.18 -1.98 -23.30 16 13 C 0.42 12.75 7.65 132.97 1.02 13.76 16 14 C -0.28 -8.14 9.29 22.59 0.21 -7.93 16 15 C 0.18 4.67 6.51 22.73 0.15 4.82 16 16 O -0.33 -6.87 10.44 -90.70 -0.95 -7.82 16 17 C 0.41 5.20 5.98 113.37 0.68 5.88 16 18 F -0.21 -3.28 15.62 44.97 0.70 -2.57 16 19 F -0.21 -3.28 15.64 44.97 0.70 -2.58 16 20 C -0.31 -7.02 8.33 22.47 0.19 -6.83 16 21 C 0.18 4.13 11.17 84.55 0.94 5.07 16 22 N -0.58 -16.47 10.39 -193.48 -2.01 -18.48 16 23 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 24 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 25 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 26 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 27 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.06 2.02 7.92 -2.39 -0.02 2.01 16 29 H 0.06 2.02 7.93 -2.39 -0.02 2.00 16 30 H 0.41 11.49 8.60 -92.71 -0.80 10.70 16 31 H 0.14 4.05 6.70 -2.91 -0.02 4.03 16 32 H 0.24 0.31 8.14 -2.39 -0.02 0.29 16 33 H 0.15 2.89 5.27 -2.91 -0.02 2.88 16 34 H 0.19 2.85 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -68.13 301.83 3.73 -64.40 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: 0.34 Total: 12.54 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: 4.61 Total: -12.30 kcal Atomic # 7 Polarization: -93.70 SS G_CDS: -3.70 Total: -97.40 kcal Atomic # 8 Polarization: -6.87 SS G_CDS: -0.95 Total: -7.82 kcal Atomic # 9 Polarization: -6.56 SS G_CDS: 1.41 Total: -5.15 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Total: -68.13 3.73 -64.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168435394.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.937 kcal (2) G-P(sol) polarization free energy of solvation -68.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds