Wall clock time and date at job start Mon Mar 30 2020 01:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38528 * 120.82333 * 2 1 4 4 C 1.38234 * 119.24360 * 180.02562 * 3 2 1 5 5 N 1.31885 * 120.93754 * 359.97438 * 4 3 2 6 6 C 1.31787 * 121.79808 * 359.73036 * 5 4 3 7 7 C 1.38948 * 120.65205 * 0.53073 * 6 5 4 8 8 N 1.39737 * 120.49545 * 179.75168 * 7 6 5 9 9 C 1.39803 * 119.99583 * 352.93066 * 8 7 6 10 10 C 1.39427 * 119.91797 * 319.83425 * 9 8 7 11 11 C 1.38361 * 120.46206 * 180.02562 * 10 9 8 12 12 C 1.38006 * 120.29230 * 0.02593 * 11 10 9 13 13 F 1.35100 * 120.08633 * 179.97438 * 12 11 10 14 14 C 1.41016 * 119.82606 * 359.97438 * 12 11 10 15 15 C 1.41290 * 120.22867 * 179.72820 * 14 12 11 16 16 H 1.07996 * 120.00049 * 337.03764 * 15 14 12 17 17 C 1.39917 * 120.00136 * 157.04608 * 15 14 12 18 18 N 1.30856 * 119.99856 * 339.68277 * 17 15 14 19 19 Si 1.86798 * 120.00116 * 159.68642 * 17 15 14 20 20 H 1.48504 * 109.47057 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47222 * 119.99531 * 19 17 15 22 22 H 1.48496 * 109.47255 * 239.99796 * 19 17 15 23 23 C 1.38189 * 119.91582 * 139.83866 * 9 8 7 24 24 H 1.08993 * 109.47153 * 269.98356 * 1 2 3 25 25 H 1.09004 * 109.46638 * 29.98023 * 1 2 3 26 26 H 1.08998 * 109.46838 * 149.97860 * 1 2 3 27 27 H 1.08003 * 120.37754 * 359.97438 * 3 2 1 28 28 H 1.08009 * 119.53244 * 179.97438 * 4 3 2 29 29 H 1.08000 * 119.67292 * 180.26455 * 6 5 4 30 30 H 0.96993 * 120.00311 * 172.93053 * 8 7 6 31 31 H 1.07996 * 119.76976 * 359.97438 * 10 9 8 32 32 H 1.08006 * 119.85327 * 180.02562 * 11 10 9 33 33 H 0.96997 * 119.99947 * 180.02562 * 18 17 15 34 34 H 1.08006 * 120.14379 * 0.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2169 1.1896 0.0000 4 6 3.5987 1.1515 -0.0005 5 7 4.2453 0.0020 -0.0005 6 6 3.6095 -1.1523 0.0052 7 6 2.2207 -1.1962 0.0005 8 7 1.5500 -2.4221 0.0014 9 6 2.2691 -3.6124 -0.1419 10 6 3.3314 -3.6789 -1.0425 11 6 4.0504 -4.8513 -1.1938 12 6 3.7227 -5.9692 -0.4539 13 9 4.4272 -7.1120 -0.6053 14 6 2.6506 -5.9156 0.4605 15 6 2.3041 -7.0567 1.2182 16 1 2.5766 -8.0411 0.8673 17 6 1.6078 -6.9116 2.4231 18 7 1.6190 -5.7636 3.0510 19 14 0.6622 -8.3565 3.1353 20 1 0.8075 -9.5327 2.2404 21 1 1.2020 -8.6876 4.4786 22 1 -0.7741 -7.9983 3.2536 23 6 1.9252 -4.7201 0.6093 24 1 -0.3633 -0.0003 1.0276 25 1 -0.3633 0.8902 -0.5136 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6966 2.1361 -0.0004 28 1 4.1568 2.0762 -0.0010 29 1 4.1735 -2.0733 0.0094 30 1 0.5856 -2.4472 0.1015 31 1 3.5943 -2.8095 -1.6267 32 1 4.8717 -4.8918 -1.8940 33 1 1.1366 -5.6630 3.8865 34 1 1.1019 -4.6683 1.3065 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001174119448.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:43 Heat of formation + Delta-G solvation = 5.745125 kcal Electronic energy + Delta-G solvation = -19904.159517 eV Core-core repulsion = 16715.671617 eV Total energy + Delta-G solvation = -3188.487900 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -47.26913 -40.17948 -37.88646 -35.34676 -33.92203 -32.98980 -30.10947 -29.78584 -27.86428 -27.07866 -25.54223 -22.77662 -22.14364 -21.10425 -20.39663 -17.75493 -17.19759 -16.34757 -16.18328 -15.65344 -15.39291 -14.69192 -14.66107 -14.17735 -14.04411 -13.67230 -13.04877 -12.81798 -12.73389 -12.67769 -12.45728 -12.14111 -11.91226 -11.74633 -11.48566 -11.18282 -11.10223 -10.64141 -10.36072 -10.31309 -9.64321 -9.37024 -9.13309 -9.10103 -7.96204 -7.76319 -7.02987 -6.59149 -4.57731 1.52237 1.63954 2.52604 2.66605 2.97290 3.00654 3.05287 3.77780 3.79714 4.18237 4.36979 4.92974 4.96145 5.01339 5.27370 5.31188 5.56798 5.59948 5.62014 5.83198 5.94372 5.97925 6.02477 6.31848 6.35886 6.50005 6.69778 6.74813 6.92980 7.00375 7.05731 7.39524 7.47854 7.64974 7.79972 8.04403 8.11204 8.40570 8.45251 8.56393 8.67143 9.92588 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.020749 B = 0.005463 C = 0.004641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.155313 B = 5124.012613 C = 6031.807309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.131 4.131 3 C -0.133 4.133 4 C 0.026 3.974 5 N -0.454 5.454 6 C 0.039 3.961 7 C 0.171 3.829 8 N -0.668 5.668 9 C 0.156 3.844 10 C -0.251 4.251 11 C -0.098 4.098 12 C -0.040 4.040 13 F -0.163 7.163 14 C 0.104 3.896 15 C -0.448 4.448 16 H 0.087 0.913 17 C 0.077 3.923 18 N -0.778 5.778 19 Si 0.912 3.088 20 H -0.257 1.257 21 H -0.272 1.272 22 H -0.270 1.270 23 C -0.175 4.175 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.127 0.873 28 H 0.146 0.854 29 H 0.172 0.828 30 H 0.402 0.598 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.284 0.716 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.144 8.659 -2.615 9.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.143 4.143 3 C -0.153 4.153 4 C -0.132 4.132 5 N -0.162 5.162 6 C -0.124 4.124 7 C 0.065 3.935 8 N -0.288 5.288 9 C 0.063 3.937 10 C -0.273 4.273 11 C -0.118 4.118 12 C -0.061 4.061 13 F -0.142 7.142 14 C 0.100 3.900 15 C -0.476 4.476 16 H 0.105 0.895 17 C -0.143 4.143 18 N -0.402 5.402 19 Si 0.735 3.265 20 H -0.181 1.181 21 H -0.197 1.197 22 H -0.195 1.195 23 C -0.197 4.197 24 H 0.088 0.912 25 H 0.087 0.913 26 H 0.082 0.918 27 H 0.145 0.855 28 H 0.163 0.837 29 H 0.189 0.811 30 H 0.239 0.761 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.095 0.905 34 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.197 8.631 -2.413 9.515 hybrid contribution -1.613 -0.672 0.482 1.812 sum -4.809 7.959 -1.931 9.498 Atomic orbital electron populations 1.20596 0.90809 1.02612 1.02258 1.19754 0.96231 0.91713 1.06636 1.21682 0.95358 0.97397 1.00866 1.22367 0.91565 0.96077 1.03183 1.67575 1.40736 0.98106 1.09830 1.23105 0.90221 0.97054 1.02048 1.18780 0.93359 0.85933 0.95431 1.42122 1.08549 1.01641 1.76498 1.17543 0.94764 0.85238 0.96176 1.20083 1.03431 0.98120 1.05621 1.20328 0.99845 0.92242 0.99380 1.17814 0.97509 0.82862 1.07889 1.91275 1.78009 1.49427 1.95473 1.17378 0.88703 0.93470 0.90469 1.19592 1.30124 0.94481 1.03385 0.89489 1.25968 0.94635 0.97323 0.96377 1.69847 1.31310 1.25496 1.13568 0.86190 0.79453 0.81620 0.79217 1.18055 1.19711 1.19488 1.20892 1.04033 0.92527 1.02208 0.91201 0.91306 0.91801 0.85536 0.83711 0.81100 0.76138 0.87645 0.87583 0.90485 0.85361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 9.60 36.01 0.35 -0.84 16 2 C -0.13 -1.90 5.93 -104.12 -0.62 -2.52 16 3 C -0.13 -1.75 9.81 -39.48 -0.39 -2.14 16 4 C 0.03 0.38 11.17 -17.53 -0.20 0.18 16 5 N -0.45 -8.07 10.35 -13.07 -0.14 -8.21 16 6 C 0.04 0.72 9.17 -17.31 -0.16 0.56 16 7 C 0.17 2.97 6.43 -83.60 -0.54 2.44 16 8 N -0.67 -12.02 5.37 -8.34 -0.04 -12.06 16 9 C 0.16 3.33 5.93 -83.80 -0.50 2.83 16 10 C -0.25 -5.26 7.36 -39.09 -0.29 -5.55 16 11 C -0.10 -2.15 10.00 -39.62 -0.40 -2.55 16 12 C -0.04 -0.99 7.31 -38.61 -0.28 -1.27 16 13 F -0.16 -4.01 16.69 2.25 0.04 -3.98 16 14 C 0.10 2.66 5.58 -106.78 -0.60 2.06 16 15 C -0.45 -11.48 8.78 -37.79 -0.33 -11.81 16 16 H 0.09 2.22 7.72 -52.49 -0.41 1.81 16 17 C 0.08 1.83 5.09 -17.34 -0.09 1.74 16 18 N -0.78 -18.89 11.02 55.55 0.61 -18.28 16 19 Si 0.91 17.74 29.60 -169.99 -5.03 12.70 16 20 H -0.26 -5.02 7.11 56.52 0.40 -4.61 16 21 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 22 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 23 C -0.17 -4.16 8.63 -38.70 -0.33 -4.49 16 24 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 26 H 0.06 0.70 6.78 -51.93 -0.35 0.35 16 27 H 0.13 1.25 8.06 -52.48 -0.42 0.83 16 28 H 0.15 1.67 8.06 -52.48 -0.42 1.24 16 29 H 0.17 3.44 5.23 -52.49 -0.27 3.17 16 30 H 0.40 6.38 7.07 -40.82 -0.29 6.09 16 31 H 0.11 2.07 6.46 -52.49 -0.34 1.73 16 32 H 0.11 2.06 8.06 -52.48 -0.42 1.64 16 33 H 0.28 6.23 8.30 -40.82 -0.34 5.89 16 34 H 0.13 3.12 6.15 -52.48 -0.32 2.79 16 LS Contribution 293.29 15.07 4.42 4.42 Total: -1.00 -27.09 293.29 -7.74 -34.83 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -3.23 Total: 11.92 kcal Atomic # 6 Polarization: -16.99 SS G_CDS: -4.37 Total: -21.35 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.43 Total: -38.55 kcal Atomic # 9 Polarization: -4.01 SS G_CDS: 0.04 Total: -3.98 kcal Atomic # 14 Polarization: 17.74 SS G_CDS: -5.03 Total: 12.70 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -27.09 -7.74 -34.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174119448.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.577 kcal (2) G-P(sol) polarization free energy of solvation -27.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds