Wall clock time and date at job start Mon Mar 30 2020 01:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38528 * 120.82333 * 2 1 4 4 C 1.38234 * 119.24360 * 180.02562 * 3 2 1 5 5 N 1.31885 * 120.93754 * 359.97438 * 4 3 2 6 6 C 1.31787 * 121.79808 * 359.73036 * 5 4 3 7 7 C 1.38948 * 120.65205 * 0.53073 * 6 5 4 8 8 N 1.39737 * 120.49545 * 179.75168 * 7 6 5 9 9 C 1.39803 * 119.99583 * 352.93066 * 8 7 6 10 10 C 1.39427 * 119.91797 * 319.83425 * 9 8 7 11 11 C 1.38361 * 120.46206 * 180.02562 * 10 9 8 12 12 C 1.38006 * 120.29230 * 0.02593 * 11 10 9 13 13 F 1.35100 * 120.08633 * 179.97438 * 12 11 10 14 14 C 1.41016 * 119.82606 * 359.97438 * 12 11 10 15 15 C 1.41290 * 120.22867 * 179.72820 * 14 12 11 16 16 H 1.07996 * 120.00049 * 337.03764 * 15 14 12 17 17 C 1.39917 * 120.00136 * 157.04608 * 15 14 12 18 18 N 1.30856 * 119.99856 * 339.68277 * 17 15 14 19 19 Si 1.86798 * 120.00116 * 159.68642 * 17 15 14 20 20 H 1.48504 * 109.47057 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47222 * 119.99531 * 19 17 15 22 22 H 1.48496 * 109.47255 * 239.99796 * 19 17 15 23 23 C 1.38189 * 119.91582 * 139.83866 * 9 8 7 24 24 H 1.08993 * 109.47153 * 269.98356 * 1 2 3 25 25 H 1.09004 * 109.46638 * 29.98023 * 1 2 3 26 26 H 1.08998 * 109.46838 * 149.97860 * 1 2 3 27 27 H 1.08003 * 120.37754 * 359.97438 * 3 2 1 28 28 H 1.08009 * 119.53244 * 179.97438 * 4 3 2 29 29 H 1.08000 * 119.67292 * 180.26455 * 6 5 4 30 30 H 0.96993 * 120.00311 * 172.93053 * 8 7 6 31 31 H 1.07996 * 119.76976 * 359.97438 * 10 9 8 32 32 H 1.08006 * 119.85327 * 180.02562 * 11 10 9 33 33 H 0.96997 * 119.99947 * 180.02562 * 18 17 15 34 34 H 1.08006 * 120.14379 * 0.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2169 1.1896 0.0000 4 6 3.5987 1.1515 -0.0005 5 7 4.2453 0.0020 -0.0005 6 6 3.6095 -1.1523 0.0052 7 6 2.2207 -1.1962 0.0005 8 7 1.5500 -2.4221 0.0014 9 6 2.2691 -3.6124 -0.1419 10 6 3.3314 -3.6789 -1.0425 11 6 4.0504 -4.8513 -1.1938 12 6 3.7227 -5.9692 -0.4539 13 9 4.4272 -7.1120 -0.6053 14 6 2.6506 -5.9156 0.4605 15 6 2.3041 -7.0567 1.2182 16 1 2.5766 -8.0411 0.8673 17 6 1.6078 -6.9116 2.4231 18 7 1.6190 -5.7636 3.0510 19 14 0.6622 -8.3565 3.1353 20 1 0.8075 -9.5327 2.2404 21 1 1.2020 -8.6876 4.4786 22 1 -0.7741 -7.9983 3.2536 23 6 1.9252 -4.7201 0.6093 24 1 -0.3633 -0.0003 1.0276 25 1 -0.3633 0.8902 -0.5136 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6966 2.1361 -0.0004 28 1 4.1568 2.0762 -0.0010 29 1 4.1735 -2.0733 0.0094 30 1 0.5856 -2.4472 0.1015 31 1 3.5943 -2.8095 -1.6267 32 1 4.8717 -4.8918 -1.8940 33 1 1.1366 -5.6630 3.8865 34 1 1.1019 -4.6683 1.3065 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001174119448.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:42 Heat of formation + Delta-G solvation = -8.611729 kcal Electronic energy + Delta-G solvation = -19904.782077 eV Core-core repulsion = 16715.671617 eV Total energy + Delta-G solvation = -3189.110460 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.17549 -41.47696 -39.51812 -36.87642 -35.55107 -34.29878 -31.82390 -31.26633 -29.17688 -28.41077 -27.34704 -24.14515 -23.67365 -22.53157 -22.05926 -19.47781 -18.58553 -18.06877 -17.74032 -17.08205 -16.91300 -16.37740 -16.14683 -15.94810 -15.35797 -14.98391 -14.61244 -14.48344 -14.06011 -13.82643 -13.71568 -13.53462 -13.50402 -13.37994 -12.94039 -12.77369 -12.47789 -12.22623 -12.05248 -11.98658 -11.39468 -11.09867 -10.37892 -10.23068 -9.59450 -9.54377 -8.79802 -8.14226 -6.48044 0.27166 0.37650 0.80817 0.92596 1.36701 1.44916 1.52548 2.16600 2.36487 2.56524 2.98438 3.44904 3.79438 3.86496 3.92755 4.02814 4.15398 4.23654 4.48155 4.57618 4.67762 4.77293 4.79418 4.93084 5.00890 5.04979 5.13038 5.22925 5.28478 5.40129 5.61587 5.67780 5.82129 5.93060 5.98117 6.27533 6.61143 6.67578 6.71333 6.87269 7.20877 8.17624 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.020749 B = 0.005463 C = 0.004641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.155313 B = 5124.012613 C = 6031.807309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.121 4.121 3 C -0.123 4.123 4 C 0.028 3.972 5 N -0.481 5.481 6 C 0.010 3.990 7 C 0.146 3.854 8 N -0.667 5.667 9 C 0.171 3.829 10 C -0.241 4.241 11 C -0.094 4.094 12 C -0.077 4.077 13 F -0.170 7.170 14 C 0.079 3.921 15 C -0.487 4.487 16 H 0.074 0.926 17 C 0.043 3.957 18 N -0.806 5.806 19 Si 0.984 3.016 20 H -0.261 1.261 21 H -0.264 1.264 22 H -0.256 1.256 23 C -0.192 4.192 24 H 0.080 0.920 25 H 0.097 0.903 26 H 0.062 0.938 27 H 0.172 0.828 28 H 0.179 0.821 29 H 0.146 0.854 30 H 0.412 0.588 31 H 0.122 0.878 32 H 0.130 0.870 33 H 0.294 0.706 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.697 11.310 -2.603 12.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.133 4.133 3 C -0.143 4.143 4 C -0.131 4.131 5 N -0.191 5.191 6 C -0.151 4.151 7 C 0.042 3.958 8 N -0.289 5.289 9 C 0.076 3.924 10 C -0.263 4.263 11 C -0.113 4.113 12 C -0.097 4.097 13 F -0.150 7.150 14 C 0.075 3.925 15 C -0.515 4.515 16 H 0.092 0.908 17 C -0.175 4.175 18 N -0.430 5.430 19 Si 0.804 3.196 20 H -0.185 1.185 21 H -0.189 1.189 22 H -0.180 1.180 23 C -0.214 4.214 24 H 0.098 0.902 25 H 0.116 0.884 26 H 0.081 0.919 27 H 0.189 0.811 28 H 0.196 0.804 29 H 0.163 0.837 30 H 0.250 0.750 31 H 0.140 0.860 32 H 0.148 0.852 33 H 0.105 0.895 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.746 11.314 -2.409 12.503 hybrid contribution -1.075 -1.179 0.425 1.651 sum -5.821 10.135 -1.984 11.855 Atomic orbital electron populations 1.20712 0.88228 1.04049 1.03331 1.20248 0.98132 0.90876 1.04070 1.22174 0.94894 0.98696 0.98533 1.23061 0.92877 0.96092 1.01044 1.67535 1.41725 0.98755 1.11044 1.22772 0.90853 0.96865 1.04568 1.18915 0.93137 0.86499 0.97208 1.41950 1.08803 1.00940 1.77249 1.17546 0.94363 0.85801 0.94685 1.20292 1.02797 0.98129 1.05049 1.20605 1.00207 0.91544 0.98974 1.18101 0.98419 0.83611 1.09575 1.91233 1.78171 1.49942 1.95638 1.17727 0.89365 0.94356 0.91072 1.19732 1.32724 0.94052 1.05019 0.90805 1.26741 0.94681 1.00137 0.95924 1.69868 1.31765 1.27200 1.14163 0.85131 0.78448 0.77786 0.78266 1.18515 1.18889 1.17994 1.20815 1.04348 0.93150 1.03108 0.90170 0.88406 0.91901 0.81053 0.80424 0.83730 0.75020 0.86041 0.85167 0.89515 0.86273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.96 9.60 71.24 0.68 -1.27 16 2 C -0.12 -3.12 5.93 -19.54 -0.12 -3.23 16 3 C -0.12 -2.69 9.81 22.34 0.22 -2.47 16 4 C 0.03 0.72 11.17 84.68 0.95 1.67 16 5 N -0.48 -16.54 10.35 -195.27 -2.02 -18.56 16 6 C 0.01 0.38 9.17 84.87 0.78 1.16 16 7 C 0.15 4.92 6.43 38.30 0.25 5.17 16 8 N -0.67 -23.78 5.37 -180.31 -0.97 -24.75 16 9 C 0.17 7.43 5.93 38.14 0.23 7.66 16 10 C -0.24 -10.24 7.36 22.59 0.17 -10.07 16 11 C -0.09 -4.19 10.00 22.24 0.22 -3.97 16 12 C -0.08 -3.94 7.31 22.90 0.17 -3.77 16 13 F -0.17 -8.83 16.69 44.97 0.75 -8.07 16 14 C 0.08 4.23 5.58 -21.26 -0.12 4.11 16 15 C -0.49 -26.26 8.78 23.43 0.21 -26.05 16 16 H 0.07 4.01 7.72 -2.91 -0.02 3.99 16 17 C 0.04 2.08 5.09 85.24 0.43 2.52 16 18 N -0.81 -40.06 11.02 21.82 0.24 -39.82 16 19 Si 0.98 36.88 29.60 68.60 2.03 38.91 16 20 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 21 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 22 H -0.26 -8.94 7.11 99.48 0.71 -8.23 16 23 C -0.19 -9.50 8.63 22.84 0.20 -9.30 16 24 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.10 1.27 8.10 -2.38 -0.02 1.25 16 26 H 0.06 1.19 6.78 -2.39 -0.02 1.18 16 27 H 0.17 2.25 8.06 -2.91 -0.02 2.23 16 28 H 0.18 3.30 8.06 -2.91 -0.02 3.28 16 29 H 0.15 6.02 5.23 -2.91 -0.02 6.00 16 30 H 0.41 12.79 7.07 -92.71 -0.66 12.13 16 31 H 0.12 4.75 6.46 -2.91 -0.02 4.73 16 32 H 0.13 5.05 8.06 -2.91 -0.02 5.03 16 33 H 0.29 13.01 8.30 -92.71 -0.77 12.25 16 34 H 0.12 6.03 6.15 -2.91 -0.02 6.01 16 Total: -1.00 -61.73 293.29 4.79 -56.95 By element: Atomic # 1 Polarization: 32.72 SS G_CDS: 0.50 Total: 33.22 kcal Atomic # 6 Polarization: -42.12 SS G_CDS: 4.26 Total: -37.87 kcal Atomic # 7 Polarization: -80.38 SS G_CDS: -2.75 Total: -83.13 kcal Atomic # 9 Polarization: -8.83 SS G_CDS: 0.75 Total: -8.07 kcal Atomic # 14 Polarization: 36.88 SS G_CDS: 2.03 Total: 38.91 kcal Total: -61.73 4.79 -56.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174119448.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.335 kcal (2) G-P(sol) polarization free energy of solvation -61.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds