Wall clock time and date at job start Mon Mar 30 2020 01:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38277 * 119.53321 * 2 1 4 4 C 1.38492 * 119.24458 * 179.97438 * 3 2 1 5 5 C 1.39334 * 118.35483 * 0.02562 * 4 3 2 6 6 N 1.39723 * 120.49639 * 179.97438 * 5 4 3 7 7 C 1.39806 * 120.00416 * 149.00196 * 6 5 4 8 8 C 1.39432 * 119.91310 * 331.14371 * 7 6 5 9 9 C 1.38359 * 120.46016 * 180.27545 * 8 7 6 10 10 C 1.38008 * 120.29214 * 359.97438 * 9 8 7 11 11 F 1.35099 * 120.08967 * 179.97438 * 10 9 8 12 12 C 1.41023 * 119.82681 * 359.97438 * 10 9 8 13 13 C 1.41292 * 120.22646 * 180.02562 * 12 10 9 14 14 H 1.07997 * 120.00138 * 327.70491 * 13 12 10 15 15 C 1.39911 * 119.99449 * 147.69804 * 13 12 10 16 16 N 1.30856 * 119.99833 * 164.83328 * 15 13 12 17 17 Si 1.86804 * 120.00386 * 344.83507 * 15 13 12 18 18 H 1.48496 * 109.47019 * 90.91494 * 17 15 13 19 19 H 1.48497 * 109.47171 * 210.91473 * 17 15 13 20 20 H 1.48500 * 109.46899 * 330.91444 * 17 15 13 21 21 C 1.38185 * 119.91801 * 151.41061 * 7 6 5 22 22 C 1.38910 * 119.01249 * 0.24942 * 5 4 3 23 23 N 1.31811 * 120.65307 * 359.48031 * 22 5 4 24 24 H 1.08996 * 109.47324 * 89.99721 * 1 2 3 25 25 H 1.08999 * 109.46906 * 209.99709 * 1 2 3 26 26 H 1.08998 * 109.46861 * 329.99586 * 1 2 3 27 27 H 1.08003 * 120.37938 * 0.02562 * 3 2 1 28 28 H 1.07997 * 120.82435 * 179.97438 * 4 3 2 29 29 H 0.97009 * 120.00078 * 329.00774 * 6 5 4 30 30 H 1.07993 * 119.76744 * 0.27135 * 8 7 6 31 31 H 1.08004 * 119.85031 * 179.97438 * 9 8 7 32 32 H 0.97002 * 119.99986 * 179.97438 * 16 15 13 33 33 H 1.08003 * 120.14335 * 359.71050 * 21 7 6 34 34 H 1.07998 * 119.67713 * 179.74368 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1886 1.2031 0.0000 4 6 3.5735 1.1961 0.0005 5 6 4.2291 -0.0334 0.0005 6 7 5.6251 -0.0926 0.0005 7 6 6.2795 -1.1591 0.6240 8 6 5.6827 -1.8039 1.7067 9 6 6.3229 -2.8569 2.3358 10 6 7.5607 -3.2811 1.8971 11 9 8.1823 -4.3094 2.5147 12 6 8.1751 -2.6384 0.8024 13 6 9.4420 -3.0662 0.3460 14 1 10.1616 -3.4650 1.0455 15 6 9.7640 -2.9732 -1.0124 16 7 11.0096 -3.0814 -1.3984 17 14 8.4158 -2.6944 -2.2751 18 1 8.2354 -1.2367 -2.4929 19 1 8.7954 -3.3431 -3.5558 20 1 7.1450 -3.2820 -1.7802 21 6 7.5187 -1.5680 0.1693 22 6 3.4741 -1.1994 -0.0053 23 7 2.1571 -1.1473 -0.0005 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 1.6472 2.1376 0.0004 28 1 4.1316 2.1207 0.0001 29 1 6.1402 0.6064 -0.4321 30 1 4.7141 -1.4791 2.0567 31 1 5.8517 -3.3490 3.1738 32 1 11.2329 -3.0173 -2.3402 33 1 7.9805 -1.0685 -0.6696 34 1 3.9712 -2.1582 -0.0096 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001174284535.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:46 Heat of formation + Delta-G solvation = 5.162705 kcal Electronic energy + Delta-G solvation = -19789.321645 eV Core-core repulsion = 16600.808490 eV Total energy + Delta-G solvation = -3188.513156 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -47.38833 -40.31959 -38.21793 -35.51476 -33.65130 -32.18889 -31.64368 -30.67486 -28.32778 -26.28906 -25.31438 -23.48367 -22.08916 -21.74900 -20.36501 -17.86865 -17.28727 -16.57756 -16.31111 -15.95926 -15.46528 -14.83056 -14.75498 -14.30307 -14.20296 -13.76472 -13.44367 -13.09851 -12.86132 -12.67927 -12.34168 -12.18197 -12.12324 -11.94771 -11.72622 -11.60587 -10.95948 -10.82724 -10.31989 -10.06678 -9.85188 -9.54927 -9.35796 -9.25598 -8.24484 -7.92826 -7.09678 -6.74212 -4.67272 1.25252 1.39151 2.35395 2.40300 2.98027 3.10694 3.21297 3.58957 3.84767 3.91906 4.30545 4.55810 4.81081 4.98533 5.08414 5.12912 5.39082 5.55629 5.57985 5.64292 5.72774 5.76418 5.90114 6.10209 6.15753 6.25378 6.35102 6.42375 6.71615 6.79738 6.96788 7.14161 7.25603 7.45801 7.61060 7.93394 7.94200 8.20532 8.21424 8.43019 8.58411 9.92205 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.023443 B = 0.005402 C = 0.004777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.122886 B = 5181.998865 C = 5860.612767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.070 3.930 3 C -0.138 4.138 4 C -0.136 4.136 5 C 0.148 3.852 6 N -0.682 5.682 7 C 0.197 3.803 8 C -0.254 4.254 9 C -0.087 4.087 10 C -0.025 4.025 11 F -0.156 7.156 12 C 0.090 3.910 13 C -0.435 4.435 14 H 0.098 0.902 15 C 0.085 3.915 16 N -0.800 5.800 17 Si 0.915 3.085 18 H -0.270 1.270 19 H -0.289 1.289 20 H -0.244 1.244 21 C -0.260 4.260 22 C 0.067 3.933 23 N -0.456 5.456 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.130 0.870 28 H 0.132 0.868 29 H 0.405 0.595 30 H 0.106 0.894 31 H 0.111 0.889 32 H 0.288 0.712 33 H 0.113 0.887 34 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.651 8.075 -0.461 15.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.069 4.069 3 C -0.158 4.158 4 C -0.166 4.166 5 C 0.045 3.955 6 N -0.305 5.305 7 C 0.102 3.898 8 C -0.276 4.276 9 C -0.107 4.107 10 C -0.046 4.046 11 F -0.135 7.135 12 C 0.085 3.915 13 C -0.462 4.462 14 H 0.116 0.884 15 C -0.135 4.135 16 N -0.423 5.423 17 Si 0.742 3.258 18 H -0.196 1.196 19 H -0.216 1.216 20 H -0.167 1.167 21 C -0.282 4.282 22 C -0.095 4.095 23 N -0.166 5.166 24 H 0.088 0.912 25 H 0.091 0.909 26 H 0.087 0.913 27 H 0.148 0.852 28 H 0.150 0.850 29 H 0.241 0.759 30 H 0.124 0.876 31 H 0.129 0.871 32 H 0.099 0.901 33 H 0.131 0.869 34 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -13.864 7.132 -0.549 15.600 hybrid contribution 0.584 1.137 -0.701 1.458 sum -13.279 8.268 -1.250 15.693 Atomic orbital electron populations 1.20566 0.89315 1.02858 1.02424 1.21070 0.96776 0.88441 1.00569 1.21674 0.93883 0.98978 1.01274 1.21259 0.94596 0.96782 1.03953 1.18816 0.84820 0.94627 0.97238 1.42090 1.01999 1.26505 1.59925 1.17450 0.92223 0.88321 0.91811 1.19958 1.02572 1.04042 1.01002 1.20411 0.93853 0.97127 0.99260 1.17751 0.93583 0.92100 1.01158 1.91312 1.82956 1.57204 1.82070 1.17457 0.92759 0.90423 0.90827 1.19430 0.97578 1.34967 0.94266 0.88439 1.26163 0.96387 0.91079 0.99910 1.69672 1.18967 1.34395 1.19245 0.86259 0.82396 0.79011 0.78181 1.19599 1.21588 1.16680 1.20541 0.98193 1.02669 1.06810 1.22796 0.88817 0.98039 0.99874 1.67440 1.09134 1.29198 1.10788 0.91154 0.90903 0.91326 0.85185 0.85043 0.75888 0.87628 0.87124 0.90114 0.86924 0.82128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.90 10.17 36.01 0.37 -0.54 16 2 C 0.07 0.92 6.78 -82.56 -0.56 0.36 16 3 C -0.14 -1.62 9.73 -39.47 -0.38 -2.00 16 4 C -0.14 -1.75 10.11 -39.08 -0.39 -2.14 16 5 C 0.15 2.30 5.91 -83.61 -0.49 1.81 16 6 N -0.68 -11.34 5.47 -8.34 -0.05 -11.39 16 7 C 0.20 3.94 5.96 -83.80 -0.50 3.44 16 8 C -0.25 -5.02 7.96 -39.09 -0.31 -5.33 16 9 C -0.09 -1.80 10.00 -39.62 -0.40 -2.20 16 10 C -0.03 -0.60 7.31 -38.61 -0.28 -0.88 16 11 F -0.16 -3.79 16.79 2.25 0.04 -3.75 16 12 C 0.09 2.23 5.07 -106.78 -0.54 1.69 16 13 C -0.43 -11.60 9.25 -37.80 -0.35 -11.95 16 14 H 0.10 2.79 8.01 -52.49 -0.42 2.37 16 15 C 0.08 2.16 5.43 -17.34 -0.09 2.06 16 16 N -0.80 -20.74 13.93 55.55 0.77 -19.97 16 17 Si 0.92 20.21 24.53 -169.99 -4.17 16.04 16 18 H -0.27 -5.65 6.55 56.52 0.37 -5.28 16 19 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 20 H -0.24 -5.56 6.97 56.52 0.39 -5.16 16 21 C -0.26 -5.83 7.08 -38.70 -0.27 -6.10 16 22 C 0.07 1.12 9.06 -17.31 -0.16 0.96 16 23 N -0.46 -7.30 10.26 -9.30 -0.10 -7.40 16 24 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 27 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 28 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 29 H 0.41 5.88 8.91 -40.82 -0.36 5.52 16 30 H 0.11 1.96 6.54 -52.49 -0.34 1.61 16 31 H 0.11 2.02 8.06 -52.48 -0.42 1.60 16 32 H 0.29 6.73 8.30 -40.82 -0.34 6.39 16 33 H 0.11 2.49 4.73 -52.48 -0.25 2.25 16 34 H 0.16 2.88 6.68 -52.49 -0.35 2.53 16 LS Contribution 293.11 15.07 4.42 4.42 Total: -1.00 -27.75 293.11 -6.89 -34.64 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -3.43 Total: 8.24 kcal Atomic # 6 Polarization: -16.46 SS G_CDS: -4.37 Total: -20.83 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 0.63 Total: -38.75 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.04 Total: -3.75 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -4.17 Total: 16.04 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -27.75 -6.89 -34.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174284535.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.799 kcal (2) G-P(sol) polarization free energy of solvation -27.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds