Wall clock time and date at job start Mon Mar 30 2020 01:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38277 * 119.53321 * 2 1 4 4 C 1.38492 * 119.24458 * 179.97438 * 3 2 1 5 5 C 1.39334 * 118.35483 * 0.02562 * 4 3 2 6 6 N 1.39723 * 120.49639 * 179.97438 * 5 4 3 7 7 C 1.39806 * 120.00416 * 149.00196 * 6 5 4 8 8 C 1.39432 * 119.91310 * 331.14371 * 7 6 5 9 9 C 1.38359 * 120.46016 * 180.27545 * 8 7 6 10 10 C 1.38008 * 120.29214 * 359.97438 * 9 8 7 11 11 F 1.35099 * 120.08967 * 179.97438 * 10 9 8 12 12 C 1.41023 * 119.82681 * 359.97438 * 10 9 8 13 13 C 1.41292 * 120.22646 * 180.02562 * 12 10 9 14 14 H 1.07997 * 120.00138 * 327.70491 * 13 12 10 15 15 C 1.39911 * 119.99449 * 147.69804 * 13 12 10 16 16 N 1.30856 * 119.99833 * 164.83328 * 15 13 12 17 17 Si 1.86804 * 120.00386 * 344.83507 * 15 13 12 18 18 H 1.48496 * 109.47019 * 90.91494 * 17 15 13 19 19 H 1.48497 * 109.47171 * 210.91473 * 17 15 13 20 20 H 1.48500 * 109.46899 * 330.91444 * 17 15 13 21 21 C 1.38185 * 119.91801 * 151.41061 * 7 6 5 22 22 C 1.38910 * 119.01249 * 0.24942 * 5 4 3 23 23 N 1.31811 * 120.65307 * 359.48031 * 22 5 4 24 24 H 1.08996 * 109.47324 * 89.99721 * 1 2 3 25 25 H 1.08999 * 109.46906 * 209.99709 * 1 2 3 26 26 H 1.08998 * 109.46861 * 329.99586 * 1 2 3 27 27 H 1.08003 * 120.37938 * 0.02562 * 3 2 1 28 28 H 1.07997 * 120.82435 * 179.97438 * 4 3 2 29 29 H 0.97009 * 120.00078 * 329.00774 * 6 5 4 30 30 H 1.07993 * 119.76744 * 0.27135 * 8 7 6 31 31 H 1.08004 * 119.85031 * 179.97438 * 9 8 7 32 32 H 0.97002 * 119.99986 * 179.97438 * 16 15 13 33 33 H 1.08003 * 120.14335 * 359.71050 * 21 7 6 34 34 H 1.07998 * 119.67713 * 179.74368 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1886 1.2031 0.0000 4 6 3.5735 1.1961 0.0005 5 6 4.2291 -0.0334 0.0005 6 7 5.6251 -0.0926 0.0005 7 6 6.2795 -1.1591 0.6240 8 6 5.6827 -1.8039 1.7067 9 6 6.3229 -2.8569 2.3358 10 6 7.5607 -3.2811 1.8971 11 9 8.1823 -4.3094 2.5147 12 6 8.1751 -2.6384 0.8024 13 6 9.4420 -3.0662 0.3460 14 1 10.1616 -3.4650 1.0455 15 6 9.7640 -2.9732 -1.0124 16 7 11.0096 -3.0814 -1.3984 17 14 8.4158 -2.6944 -2.2751 18 1 8.2354 -1.2367 -2.4929 19 1 8.7954 -3.3431 -3.5558 20 1 7.1450 -3.2820 -1.7802 21 6 7.5187 -1.5680 0.1693 22 6 3.4741 -1.1994 -0.0053 23 7 2.1571 -1.1473 -0.0005 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 1.6472 2.1376 0.0004 28 1 4.1316 2.1207 0.0001 29 1 6.1402 0.6064 -0.4321 30 1 4.7141 -1.4791 2.0567 31 1 5.8517 -3.3490 3.1738 32 1 11.2329 -3.0173 -2.3402 33 1 7.9805 -1.0685 -0.6696 34 1 3.9712 -2.1582 -0.0096 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001174284535.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:46 Heat of formation + Delta-G solvation = -11.542750 kcal Electronic energy + Delta-G solvation = -19790.046048 eV Core-core repulsion = 16600.808490 eV Total energy + Delta-G solvation = -3189.237559 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.25835 -41.47883 -39.78049 -36.97689 -35.44062 -33.24648 -32.79167 -32.46773 -29.74767 -27.56693 -27.01258 -24.66737 -23.67987 -22.96877 -21.96570 -19.61173 -18.65848 -18.25399 -17.83223 -17.24930 -16.73441 -16.45679 -16.36310 -16.05910 -15.41341 -15.18691 -14.76106 -14.65802 -14.11026 -14.00027 -13.86736 -13.73915 -13.49657 -13.15338 -12.97257 -12.88089 -12.73090 -12.49226 -12.04573 -11.78139 -11.49991 -11.08011 -10.60838 -10.41441 -9.72584 -9.64130 -8.98410 -8.21374 -6.64367 0.09339 0.32933 0.59675 0.75962 1.19958 1.34921 1.44015 2.04825 2.27296 2.48083 2.86385 3.25411 3.54854 3.88115 3.90308 3.94640 4.06766 4.13762 4.38166 4.45089 4.61508 4.69540 4.77243 4.80389 4.89358 4.99579 5.10664 5.22721 5.25624 5.26711 5.44836 5.52975 5.64163 5.75949 5.93697 6.09358 6.37438 6.56005 6.63802 6.72787 7.12919 8.10258 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.023443 B = 0.005402 C = 0.004777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.122886 B = 5181.998865 C = 5860.612767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.067 3.933 3 C -0.129 4.129 4 C -0.122 4.122 5 C 0.125 3.875 6 N -0.678 5.678 7 C 0.211 3.789 8 C -0.234 4.234 9 C -0.078 4.078 10 C -0.060 4.060 11 F -0.168 7.168 12 C 0.076 3.924 13 C -0.478 4.478 14 H 0.055 0.945 15 C 0.053 3.947 16 N -0.842 5.842 17 Si 0.967 3.033 18 H -0.246 1.246 19 H -0.276 1.276 20 H -0.258 1.258 21 C -0.265 4.265 22 C 0.045 3.955 23 N -0.484 5.484 24 H 0.083 0.917 25 H 0.065 0.935 26 H 0.098 0.902 27 H 0.173 0.827 28 H 0.161 0.839 29 H 0.416 0.584 30 H 0.127 0.873 31 H 0.139 0.861 32 H 0.297 0.703 33 H 0.116 0.884 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.641 11.192 -0.950 20.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.072 4.072 3 C -0.149 4.149 4 C -0.151 4.151 5 C 0.024 3.976 6 N -0.302 5.302 7 C 0.114 3.886 8 C -0.256 4.256 9 C -0.097 4.097 10 C -0.081 4.081 11 F -0.147 7.147 12 C 0.072 3.928 13 C -0.507 4.507 14 H 0.073 0.927 15 C -0.163 4.163 16 N -0.467 5.467 17 Si 0.789 3.211 18 H -0.171 1.171 19 H -0.203 1.203 20 H -0.182 1.182 21 C -0.287 4.287 22 C -0.116 4.116 23 N -0.194 5.194 24 H 0.101 0.899 25 H 0.084 0.916 26 H 0.116 0.884 27 H 0.190 0.810 28 H 0.179 0.821 29 H 0.254 0.746 30 H 0.144 0.856 31 H 0.157 0.843 32 H 0.108 0.892 33 H 0.134 0.866 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -17.871 10.277 -1.044 20.642 hybrid contribution 1.461 0.307 -0.417 1.550 sum -16.410 10.583 -1.461 19.581 Atomic orbital electron populations 1.20696 0.86810 1.04046 1.03586 1.21804 0.98560 0.88283 0.98564 1.22145 0.93549 1.00119 0.99064 1.21645 0.95300 0.96649 1.01490 1.18901 0.83912 0.95533 0.99270 1.41945 1.02695 1.25657 1.59915 1.17443 0.91300 0.88591 0.91252 1.20257 1.02779 1.02708 0.99860 1.20719 0.92433 0.96921 0.99632 1.18096 0.95028 0.92945 1.02040 1.91270 1.83405 1.57781 1.82266 1.17605 0.92411 0.91121 0.91614 1.19323 0.98426 1.38245 0.94703 0.92678 1.26790 0.98164 0.90548 1.00795 1.69697 1.20303 1.36549 1.20183 0.85486 0.79048 0.80205 0.76312 1.17097 1.20285 1.18204 1.20582 0.99170 1.02158 1.06827 1.22539 0.89530 0.97689 1.01803 1.67431 1.08870 1.31084 1.12016 0.89888 0.91573 0.88358 0.80984 0.82106 0.74561 0.85565 0.84308 0.89189 0.86629 0.84483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.39 10.17 71.24 0.72 -0.66 16 2 C 0.07 1.49 6.78 42.56 0.29 1.78 16 3 C -0.13 -2.30 9.73 22.34 0.22 -2.09 16 4 C -0.12 -2.52 10.11 22.59 0.23 -2.29 16 5 C 0.12 3.48 5.91 38.31 0.23 3.70 16 6 N -0.68 -20.62 5.47 -180.31 -0.99 -21.60 16 7 C 0.21 8.11 5.96 38.14 0.23 8.33 16 8 C -0.23 -8.81 7.96 22.59 0.18 -8.63 16 9 C -0.08 -3.15 10.00 22.24 0.22 -2.93 16 10 C -0.06 -2.95 7.31 22.90 0.17 -2.78 16 11 F -0.17 -8.55 16.79 44.97 0.76 -7.80 16 12 C 0.08 3.93 5.07 -21.26 -0.11 3.82 16 13 C -0.48 -27.26 9.25 23.43 0.22 -27.05 16 14 H 0.05 3.47 8.01 -2.91 -0.02 3.45 16 15 C 0.05 2.81 5.43 85.24 0.46 3.27 16 16 N -0.84 -45.82 13.93 21.82 0.30 -45.51 16 17 Si 0.97 42.07 24.53 68.60 1.68 43.76 16 18 H -0.25 -9.66 6.55 99.48 0.65 -9.01 16 19 H -0.28 -11.35 7.11 99.48 0.71 -10.64 16 20 H -0.26 -11.71 6.97 99.48 0.69 -11.01 16 21 C -0.26 -11.83 7.08 22.84 0.16 -11.67 16 22 C 0.04 1.41 9.06 84.86 0.77 2.18 16 23 N -0.48 -14.33 10.26 -183.32 -1.88 -16.21 16 24 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.10 0.88 8.08 -2.39 -0.02 0.87 16 27 H 0.17 1.67 8.06 -2.91 -0.02 1.64 16 28 H 0.16 2.38 8.06 -2.91 -0.02 2.35 16 29 H 0.42 10.75 8.91 -92.70 -0.83 9.92 16 30 H 0.13 4.30 6.54 -2.91 -0.02 4.28 16 31 H 0.14 4.79 8.06 -2.91 -0.02 4.76 16 32 H 0.30 14.40 8.30 -92.71 -0.77 13.63 16 33 H 0.12 5.04 4.73 -2.91 -0.01 5.03 16 34 H 0.14 4.84 6.68 -2.91 -0.02 4.82 16 Total: -1.00 -64.29 293.11 4.11 -60.18 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: 0.25 Total: 22.19 kcal Atomic # 6 Polarization: -38.98 SS G_CDS: 3.98 Total: -35.00 kcal Atomic # 7 Polarization: -80.76 SS G_CDS: -2.56 Total: -83.33 kcal Atomic # 9 Polarization: -8.55 SS G_CDS: 0.76 Total: -7.80 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 1.68 Total: 43.76 kcal Total: -64.29 4.11 -60.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174284535.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.632 kcal (2) G-P(sol) polarization free energy of solvation -64.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds