Wall clock time and date at job start Mon Mar 30 2020 01:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34803 * 120.38392 * 2 1 4 4 N 1.36082 * 120.70940 * 179.74727 * 3 2 1 5 5 H 0.97001 * 119.26106 * 180.25871 * 4 3 2 6 6 C 1.36075 * 121.47790 * 0.56779 * 4 3 2 7 7 C 1.34794 * 120.71393 * 359.69142 * 6 4 3 8 8 C 1.42012 * 120.38135 * 180.27932 * 2 1 3 9 9 N 1.33160 * 120.68689 * 359.97438 * 8 2 1 10 10 C 1.36356 * 120.00447 * 174.14384 * 9 8 2 11 11 C 1.40433 * 120.01511 * 93.03766 * 10 9 8 12 12 C 1.38095 * 120.35568 * 179.97438 * 11 10 9 13 13 C 1.38156 * 120.38842 * 0.02729 * 12 11 10 14 14 F 1.35110 * 119.98855 * 179.97438 * 13 12 11 15 15 C 1.41152 * 120.02869 * 0.02562 * 13 12 11 16 16 C 1.41319 * 120.18151 * 180.02562 * 15 13 12 17 17 H 1.08005 * 120.00096 * 24.17513 * 16 15 13 18 18 C 1.39813 * 120.00446 * 204.17922 * 16 15 13 19 19 N 1.30906 * 119.99864 * 18.13664 * 18 16 15 20 20 Si 1.86799 * 120.00131 * 198.14549 * 18 16 15 21 21 H 1.48501 * 109.47492 * 94.95484 * 20 18 16 22 22 H 1.48504 * 109.46933 * 214.95577 * 20 18 16 23 23 H 1.48499 * 109.47378 * 334.95142 * 20 18 16 24 24 C 1.39156 * 120.01514 * 272.76811 * 10 9 8 25 25 H 1.09005 * 109.47229 * 269.72126 * 1 2 3 26 26 H 1.09002 * 109.47105 * 149.71936 * 1 2 3 27 27 H 1.09000 * 109.47323 * 29.72263 * 1 2 3 28 28 H 1.08000 * 119.64492 * 359.97438 * 3 2 1 29 29 H 1.08004 * 119.64517 * 179.72443 * 6 4 3 30 30 H 1.07996 * 120.38867 * 180.02562 * 7 6 4 31 31 H 1.08005 * 119.82216 * 359.97438 * 11 10 9 32 32 H 1.07997 * 119.80750 * 180.02562 * 12 11 10 33 33 H 0.97004 * 120.00094 * 180.02562 * 19 18 16 34 34 H 1.07993 * 120.19275 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1888 1.1629 0.0000 4 7 3.5496 1.1706 0.0052 5 1 4.0189 2.0195 0.0089 6 6 4.2667 0.0142 -0.0010 7 6 3.6447 -1.1816 -0.0063 8 6 2.2252 -1.2251 -0.0060 9 7 1.5810 -2.3905 -0.0111 10 6 2.2791 -3.5549 -0.1373 11 6 2.6927 -4.2538 1.0085 12 6 3.3996 -5.4340 0.8889 13 6 3.7085 -5.9403 -0.3589 14 9 4.4010 -7.0954 -0.4665 15 6 3.3019 -5.2507 -1.5215 16 6 3.6156 -5.7659 -2.7995 17 1 3.8012 -6.8224 -2.9251 18 6 3.6859 -4.9080 -3.9012 19 7 3.8170 -3.6183 -3.7192 20 14 3.5923 -5.6021 -5.6329 21 1 2.1903 -5.5358 -6.1178 22 1 4.4654 -4.8064 -6.5329 23 1 4.0471 -7.0157 -5.6249 24 6 2.5773 -4.0543 -1.4015 25 1 -0.3634 -0.0050 1.0277 26 1 -0.3633 -0.8875 -0.5182 27 1 -0.3634 0.8924 -0.5095 28 1 1.6493 2.0985 -0.0004 29 1 5.3460 0.0549 -0.0012 30 1 4.2191 -2.0962 -0.0108 31 1 2.4565 -3.8660 1.9885 32 1 3.7129 -5.9644 1.7759 33 1 3.8653 -3.0230 -4.4835 34 1 2.2570 -3.5224 -2.2850 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001174538967.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:38 Heat of formation + Delta-G solvation = 22.554303 kcal Electronic energy + Delta-G solvation = -20021.969546 eV Core-core repulsion = 16834.210546 eV Total energy + Delta-G solvation = -3187.759000 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -47.06919 -40.05642 -37.56545 -35.09871 -33.63191 -32.72821 -30.58355 -29.65057 -27.38547 -26.60493 -25.21225 -22.79383 -21.76552 -21.20651 -19.69478 -18.26982 -17.36131 -16.30491 -15.90522 -15.68116 -15.07922 -14.52202 -14.22253 -14.10774 -13.83667 -13.45968 -13.04380 -12.60799 -12.55893 -12.44350 -11.98063 -11.93527 -11.61192 -11.44418 -11.20066 -11.12717 -10.85618 -10.49902 -10.33344 -9.99850 -9.38273 -9.25196 -9.09684 -8.85885 -7.50270 -6.84318 -6.65595 -6.48811 -4.34612 1.71056 1.85666 2.72174 2.89126 3.08891 3.14404 3.21086 3.28239 3.95436 4.13418 4.56364 4.79623 5.01829 5.36698 5.50541 5.53478 5.72518 5.97548 6.04812 6.06473 6.12992 6.25567 6.31320 6.58095 6.62736 6.77881 7.01161 7.09105 7.19964 7.28394 7.31721 7.42370 7.62872 7.73619 8.02004 8.09517 8.18900 8.54947 8.82083 8.88964 9.22784 10.18047 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.016572 B = 0.006394 C = 0.005324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.177735 B = 4378.130650 C = 5258.381503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.156 4.156 3 C 0.097 3.903 4 N -0.615 5.615 5 H 0.410 0.590 6 C 0.101 3.899 7 C -0.218 4.218 8 C 0.244 3.756 9 N -0.529 5.529 10 C 0.114 3.886 11 C -0.233 4.233 12 C -0.111 4.111 13 C -0.047 4.047 14 F -0.167 7.167 15 C 0.098 3.902 16 C -0.455 4.455 17 H 0.082 0.918 18 C 0.077 3.923 19 N -0.788 5.788 20 Si 0.910 3.090 21 H -0.268 1.268 22 H -0.277 1.277 23 H -0.261 1.261 24 C -0.160 4.160 25 H 0.059 0.941 26 H 0.077 0.923 27 H 0.052 0.948 28 H 0.154 0.846 29 H 0.153 0.847 30 H 0.143 0.857 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.280 0.720 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.212 13.626 4.020 14.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.165 4.165 3 C -0.030 4.030 4 N -0.223 5.223 5 H 0.243 0.757 6 C -0.026 4.026 7 C -0.245 4.245 8 C 0.072 3.928 9 N -0.240 5.240 10 C 0.015 3.985 11 C -0.254 4.254 12 C -0.131 4.131 13 C -0.067 4.067 14 F -0.146 7.146 15 C 0.095 3.905 16 C -0.484 4.484 17 H 0.100 0.900 18 C -0.141 4.141 19 N -0.413 5.413 20 Si 0.734 3.266 21 H -0.193 1.193 22 H -0.203 1.203 23 H -0.184 1.184 24 C -0.182 4.182 25 H 0.078 0.922 26 H 0.096 0.904 27 H 0.071 0.929 28 H 0.172 0.828 29 H 0.170 0.830 30 H 0.161 0.839 31 H 0.112 0.888 32 H 0.117 0.883 33 H 0.090 0.910 34 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.055 13.257 3.935 13.869 hybrid contribution 1.200 -0.220 -0.840 1.481 sum 0.145 13.037 3.096 13.400 Atomic orbital electron populations 1.20339 0.89969 1.02332 1.01577 1.19195 0.96681 0.90450 1.10191 1.21259 0.82870 0.99047 0.99854 1.40907 1.05324 1.08458 1.67583 0.75661 1.21468 0.96897 0.85644 0.98602 1.21786 0.95911 0.97637 1.09173 1.19021 0.89417 0.92053 0.92266 1.69214 1.34947 0.96826 1.22997 1.18524 0.93561 0.92997 0.93431 1.20308 1.10090 0.99110 0.95910 1.20309 1.01017 0.97024 0.94710 1.17900 1.06596 0.88099 0.94149 1.91250 1.78408 1.47849 1.97111 1.17461 0.90136 0.91496 0.91442 1.19478 1.41589 0.95909 0.91469 0.89990 1.25870 0.92093 0.94460 1.01671 1.69874 1.34110 1.03978 1.33297 0.86270 0.79098 0.80287 0.80959 1.19263 1.20263 1.18430 1.21269 1.02787 0.99463 0.94658 0.92204 0.90383 0.92945 0.82825 0.82995 0.83930 0.88805 0.88313 0.90953 0.85671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.15 9.81 36.00 0.35 -0.79 16 2 C -0.16 -2.38 5.90 -104.40 -0.62 -2.99 16 3 C 0.10 1.04 10.81 -16.88 -0.18 0.86 16 4 N -0.61 -5.91 5.28 -13.00 -0.07 -5.98 16 5 H 0.41 2.15 8.90 -40.82 -0.36 1.79 16 6 C 0.10 1.29 11.17 -16.89 -0.19 1.10 16 7 C -0.22 -3.98 9.26 -39.36 -0.36 -4.35 16 8 C 0.24 4.81 6.62 -84.40 -0.56 4.25 16 9 N -0.53 -12.30 9.51 -8.70 -0.08 -12.38 16 10 C 0.11 2.91 4.15 -84.69 -0.35 2.56 16 11 C -0.23 -5.70 9.96 -38.81 -0.39 -6.09 16 12 C -0.11 -2.74 9.98 -39.66 -0.40 -3.13 16 13 C -0.05 -1.28 7.31 -38.51 -0.28 -1.56 16 14 F -0.17 -4.48 16.69 2.25 0.04 -4.44 16 15 C 0.10 2.80 5.57 -106.82 -0.60 2.21 16 16 C -0.46 -12.82 8.77 -37.82 -0.33 -13.15 16 17 H 0.08 2.29 7.72 -52.48 -0.41 1.88 16 18 C 0.08 2.01 5.13 -17.36 -0.09 1.92 16 19 N -0.79 -20.73 10.98 55.54 0.61 -20.12 16 20 Si 0.91 19.43 29.60 -169.99 -5.03 14.40 16 21 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 22 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 23 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 24 C -0.16 -4.42 8.63 -38.44 -0.33 -4.76 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.08 1.27 7.59 -51.93 -0.39 0.88 16 27 H 0.05 0.54 8.08 -51.93 -0.42 0.12 16 28 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 29 H 0.15 1.44 8.06 -52.48 -0.42 1.02 16 30 H 0.14 3.04 7.02 -52.49 -0.37 2.67 16 31 H 0.09 2.14 8.06 -52.48 -0.42 1.72 16 32 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 33 H 0.28 6.69 8.30 -40.82 -0.34 6.36 16 34 H 0.13 3.64 6.17 -52.49 -0.32 3.32 16 LS Contribution 300.61 15.07 4.53 4.53 Total: -1.00 -33.37 300.61 -7.85 -41.22 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -3.52 Total: 6.70 kcal Atomic # 6 Polarization: -19.61 SS G_CDS: -4.32 Total: -23.93 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 0.46 Total: -38.48 kcal Atomic # 9 Polarization: -4.48 SS G_CDS: 0.04 Total: -4.44 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.03 Total: 14.40 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -33.37 -7.85 -41.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174538967.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.775 kcal (2) G-P(sol) polarization free energy of solvation -33.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds