Wall clock time and date at job start Mon Mar 30 2020 01:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34803 * 120.38392 * 2 1 4 4 N 1.36082 * 120.70940 * 179.74727 * 3 2 1 5 5 H 0.97001 * 119.26106 * 180.25871 * 4 3 2 6 6 C 1.36075 * 121.47790 * 0.56779 * 4 3 2 7 7 C 1.34794 * 120.71393 * 359.69142 * 6 4 3 8 8 C 1.42012 * 120.38135 * 180.27932 * 2 1 3 9 9 N 1.33160 * 120.68689 * 359.97438 * 8 2 1 10 10 C 1.36356 * 120.00447 * 174.14384 * 9 8 2 11 11 C 1.40433 * 120.01511 * 93.03766 * 10 9 8 12 12 C 1.38095 * 120.35568 * 179.97438 * 11 10 9 13 13 C 1.38156 * 120.38842 * 0.02729 * 12 11 10 14 14 F 1.35110 * 119.98855 * 179.97438 * 13 12 11 15 15 C 1.41152 * 120.02869 * 0.02562 * 13 12 11 16 16 C 1.41319 * 120.18151 * 180.02562 * 15 13 12 17 17 H 1.08005 * 120.00096 * 24.17513 * 16 15 13 18 18 C 1.39813 * 120.00446 * 204.17922 * 16 15 13 19 19 N 1.30906 * 119.99864 * 18.13664 * 18 16 15 20 20 Si 1.86799 * 120.00131 * 198.14549 * 18 16 15 21 21 H 1.48501 * 109.47492 * 94.95484 * 20 18 16 22 22 H 1.48504 * 109.46933 * 214.95577 * 20 18 16 23 23 H 1.48499 * 109.47378 * 334.95142 * 20 18 16 24 24 C 1.39156 * 120.01514 * 272.76811 * 10 9 8 25 25 H 1.09005 * 109.47229 * 269.72126 * 1 2 3 26 26 H 1.09002 * 109.47105 * 149.71936 * 1 2 3 27 27 H 1.09000 * 109.47323 * 29.72263 * 1 2 3 28 28 H 1.08000 * 119.64492 * 359.97438 * 3 2 1 29 29 H 1.08004 * 119.64517 * 179.72443 * 6 4 3 30 30 H 1.07996 * 120.38867 * 180.02562 * 7 6 4 31 31 H 1.08005 * 119.82216 * 359.97438 * 11 10 9 32 32 H 1.07997 * 119.80750 * 180.02562 * 12 11 10 33 33 H 0.97004 * 120.00094 * 180.02562 * 19 18 16 34 34 H 1.07993 * 120.19275 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1888 1.1629 0.0000 4 7 3.5496 1.1706 0.0052 5 1 4.0189 2.0195 0.0089 6 6 4.2667 0.0142 -0.0010 7 6 3.6447 -1.1816 -0.0063 8 6 2.2252 -1.2251 -0.0060 9 7 1.5810 -2.3905 -0.0111 10 6 2.2791 -3.5549 -0.1373 11 6 2.6927 -4.2538 1.0085 12 6 3.3996 -5.4340 0.8889 13 6 3.7085 -5.9403 -0.3589 14 9 4.4010 -7.0954 -0.4665 15 6 3.3019 -5.2507 -1.5215 16 6 3.6156 -5.7659 -2.7995 17 1 3.8012 -6.8224 -2.9251 18 6 3.6859 -4.9080 -3.9012 19 7 3.8170 -3.6183 -3.7192 20 14 3.5923 -5.6021 -5.6329 21 1 2.1903 -5.5358 -6.1178 22 1 4.4654 -4.8064 -6.5329 23 1 4.0471 -7.0157 -5.6249 24 6 2.5773 -4.0543 -1.4015 25 1 -0.3634 -0.0050 1.0277 26 1 -0.3633 -0.8875 -0.5182 27 1 -0.3634 0.8924 -0.5095 28 1 1.6493 2.0985 -0.0004 29 1 5.3460 0.0549 -0.0012 30 1 4.2191 -2.0962 -0.0108 31 1 2.4565 -3.8660 1.9885 32 1 3.7129 -5.9644 1.7759 33 1 3.8653 -3.0230 -4.4835 34 1 2.2570 -3.5224 -2.2850 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001174538967.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:38 Heat of formation + Delta-G solvation = 0.401978 kcal Electronic energy + Delta-G solvation = -20022.930143 eV Core-core repulsion = 16834.210546 eV Total energy + Delta-G solvation = -3188.719597 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.15481 -41.27031 -39.37387 -36.66966 -35.44951 -34.00593 -32.04622 -31.64382 -29.00994 -27.79362 -27.22173 -24.27264 -23.19859 -22.96042 -21.44808 -19.42638 -19.12200 -17.96272 -17.72620 -17.18116 -16.91541 -16.37088 -15.94785 -15.52598 -15.29578 -14.97150 -14.50908 -14.45395 -13.94115 -13.85103 -13.59746 -13.46314 -13.32620 -13.16143 -12.84848 -12.69915 -12.38887 -12.16986 -12.01206 -11.85904 -11.26699 -11.14111 -10.57710 -10.19733 -9.54388 -8.78061 -8.40157 -7.99509 -6.44919 0.51729 0.63977 0.80694 0.91634 1.32043 1.45896 1.47187 2.16518 2.29736 2.60437 2.83355 3.49154 3.85722 3.95416 4.04837 4.26016 4.30711 4.38363 4.50334 4.67721 4.80673 4.97899 4.99872 5.02315 5.04797 5.15926 5.31900 5.39059 5.47634 5.68007 5.72760 5.89409 6.02643 6.08581 6.13233 6.19701 6.51795 6.64241 6.76721 6.87719 7.65504 8.24863 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.016572 B = 0.006394 C = 0.005324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.177735 B = 4378.130650 C = 5258.381503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.207 4.207 3 C 0.146 3.854 4 N -0.581 5.581 5 H 0.442 0.558 6 C 0.156 3.844 7 C -0.287 4.287 8 C 0.251 3.749 9 N -0.609 5.609 10 C 0.144 3.856 11 C -0.243 4.243 12 C -0.100 4.100 13 C -0.087 4.087 14 F -0.172 7.172 15 C 0.075 3.925 16 C -0.496 4.496 17 H 0.070 0.930 18 C 0.037 3.963 19 N -0.810 5.810 20 Si 0.986 3.014 21 H -0.262 1.262 22 H -0.257 1.257 23 H -0.261 1.261 24 C -0.190 4.190 25 H 0.063 0.937 26 H 0.035 0.965 27 H 0.091 0.909 28 H 0.220 0.780 29 H 0.196 0.804 30 H 0.099 0.901 31 H 0.108 0.892 32 H 0.127 0.873 33 H 0.290 0.710 34 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.474 18.409 3.907 18.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.216 4.216 3 C 0.017 3.983 4 N -0.188 5.188 5 H 0.283 0.717 6 C 0.026 3.974 7 C -0.315 4.315 8 C 0.086 3.914 9 N -0.325 5.325 10 C 0.043 3.957 11 C -0.265 4.265 12 C -0.119 4.119 13 C -0.107 4.107 14 F -0.151 7.151 15 C 0.072 3.928 16 C -0.525 4.525 17 H 0.088 0.912 18 C -0.179 4.179 19 N -0.434 5.434 20 Si 0.805 3.195 21 H -0.186 1.186 22 H -0.181 1.181 23 H -0.184 1.184 24 C -0.212 4.212 25 H 0.082 0.918 26 H 0.054 0.946 27 H 0.110 0.890 28 H 0.236 0.764 29 H 0.213 0.787 30 H 0.117 0.883 31 H 0.127 0.873 32 H 0.145 0.855 33 H 0.100 0.900 34 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.334 18.151 3.851 18.558 hybrid contribution 1.091 -1.184 -0.681 1.748 sum 0.757 16.968 3.171 17.278 Atomic orbital electron populations 1.20257 0.89211 1.02170 1.01774 1.19440 0.97793 0.90090 1.14272 1.22098 0.82917 0.99806 0.93472 1.41251 1.05577 1.09133 1.62818 0.71716 1.21902 0.98817 0.84645 0.92052 1.21503 0.95458 0.98539 1.15999 1.19631 0.90537 0.92545 0.88645 1.69033 1.34271 0.97022 1.32191 1.18674 0.90513 0.94026 0.92457 1.20617 1.10069 0.99149 0.96620 1.20580 0.99786 0.96808 0.94771 1.18112 1.08782 0.88870 0.94983 1.91208 1.78683 1.48024 1.97201 1.17818 0.90466 0.92232 0.92300 1.19652 1.44199 0.95810 0.92866 0.91168 1.26767 0.90908 0.94612 1.05592 1.69932 1.33422 1.05095 1.34984 0.85152 0.79539 0.79519 0.75253 1.18619 1.18069 1.18442 1.21104 1.05016 0.99975 0.95126 0.91848 0.94583 0.89034 0.76397 0.78677 0.88325 0.87343 0.85487 0.89980 0.88170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.96 9.81 71.23 0.70 -1.26 16 2 C -0.21 -5.80 5.90 -19.72 -0.12 -5.92 16 3 C 0.15 2.20 10.81 83.24 0.90 3.10 16 4 N -0.58 -7.13 5.28 -195.03 -1.03 -8.16 16 5 H 0.44 0.74 8.90 -92.71 -0.83 -0.08 16 6 C 0.16 3.33 11.17 83.24 0.93 4.26 16 7 C -0.29 -10.53 9.26 22.42 0.21 -10.32 16 8 C 0.25 10.09 6.62 40.81 0.27 10.36 16 9 N -0.61 -30.27 9.51 -181.44 -1.73 -31.99 16 10 C 0.14 7.91 4.15 39.20 0.16 8.07 16 11 C -0.24 -12.61 9.96 22.77 0.23 -12.38 16 12 C -0.10 -5.20 9.98 22.22 0.22 -4.97 16 13 C -0.09 -5.08 7.31 22.97 0.17 -4.91 16 14 F -0.17 -9.80 16.69 44.97 0.75 -9.05 16 15 C 0.08 4.65 5.57 -21.29 -0.12 4.53 16 16 C -0.50 -29.97 8.77 23.41 0.21 -29.77 16 17 H 0.07 4.23 7.72 -2.91 -0.02 4.20 16 18 C 0.04 2.03 5.13 85.21 0.44 2.47 16 19 N -0.81 -44.55 10.98 21.80 0.24 -44.31 16 20 Si 0.99 41.00 29.60 68.60 2.03 43.03 16 21 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 22 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 23 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 24 C -0.19 -11.42 8.63 23.01 0.20 -11.22 16 25 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 26 H 0.04 1.22 7.59 -2.39 -0.02 1.20 16 27 H 0.09 1.53 8.08 -2.39 -0.02 1.52 16 28 H 0.22 0.72 8.06 -2.91 -0.02 0.69 16 29 H 0.20 2.59 8.06 -2.91 -0.02 2.57 16 30 H 0.10 4.52 7.02 -2.91 -0.02 4.50 16 31 H 0.11 5.17 8.06 -2.91 -0.02 5.14 16 32 H 0.13 5.67 8.06 -2.91 -0.02 5.65 16 33 H 0.29 14.20 8.30 -92.71 -0.77 13.43 16 34 H 0.10 6.37 6.17 -2.91 -0.02 6.35 16 Total: -1.00 -85.70 300.61 4.97 -80.73 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: 0.31 Total: 17.73 kcal Atomic # 6 Polarization: -52.37 SS G_CDS: 4.39 Total: -47.98 kcal Atomic # 7 Polarization: -81.95 SS G_CDS: -2.52 Total: -84.46 kcal Atomic # 9 Polarization: -9.80 SS G_CDS: 0.75 Total: -9.05 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Total: -85.70 4.97 -80.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174538967.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.133 kcal (2) G-P(sol) polarization free energy of solvation -85.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds