Wall clock time and date at job start Mon Mar 30 2020 01:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34808 * 119.64539 * 2 1 4 4 C 1.42009 * 119.23414 * 180.02562 * 3 2 1 5 5 N 1.33163 * 120.68332 * 179.72463 * 4 3 2 6 6 C 1.36357 * 119.99911 * 174.09879 * 5 4 3 7 7 C 1.40430 * 120.00984 * 92.86042 * 6 5 4 8 8 C 1.38107 * 120.34995 * 179.78801 * 7 6 5 9 9 C 1.38156 * 120.38949 * 0.46450 * 8 7 6 10 10 F 1.35103 * 119.98713 * 179.77001 * 9 8 7 11 11 C 1.41153 * 120.02578 * 359.78852 * 9 8 7 12 12 C 1.41327 * 120.17854 * 179.97438 * 11 9 8 13 13 H 1.08000 * 119.99892 * 24.63742 * 12 11 9 14 14 C 1.39813 * 120.00253 * 204.63571 * 12 11 9 15 15 N 1.30909 * 119.99694 * 18.18900 * 14 12 11 16 16 Si 1.86797 * 120.00114 * 198.18878 * 14 12 11 17 17 H 1.48505 * 109.47259 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.47336 * 119.99980 * 16 14 12 19 19 H 1.48501 * 109.47418 * 240.00042 * 16 14 12 20 20 C 1.39153 * 120.02034 * 273.13349 * 6 5 4 21 21 C 1.42009 * 118.63081 * 0.02562 * 4 3 2 22 22 C 1.34802 * 119.23745 * 0.02562 * 21 4 3 23 23 N 1.36077 * 119.64584 * 180.02562 * 2 1 3 24 24 H 0.96999 * 119.26096 * 0.02562 * 23 2 1 25 25 H 1.09001 * 109.46976 * 89.99401 * 1 2 3 26 26 H 1.08994 * 109.47053 * 209.99853 * 1 2 3 27 27 H 1.09002 * 109.47208 * 329.99536 * 1 2 3 28 28 H 1.07998 * 120.38168 * 359.97438 * 3 2 1 29 29 H 1.07999 * 119.82726 * 0.02562 * 7 6 5 30 30 H 1.07997 * 119.80853 * 180.21371 * 8 7 6 31 31 H 0.97005 * 119.99537 * 179.97438 * 15 14 12 32 32 H 1.08006 * 120.18936 * 359.95439 * 20 6 5 33 33 H 1.08002 * 120.38135 * 179.97438 * 21 4 3 34 34 H 1.07999 * 119.64570 * 179.97438 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1738 1.1716 0.0000 4 6 3.5939 1.1614 -0.0006 5 7 4.2816 2.3017 -0.0061 6 6 5.6396 2.2794 0.1149 7 6 6.4468 2.2585 -1.0341 8 6 7.8230 2.2403 -0.9198 9 6 8.4208 2.2328 0.3257 10 9 9.7678 2.2102 0.4281 11 6 7.6249 2.2482 1.4913 12 6 8.2330 2.2401 2.7670 13 1 9.2393 2.6132 2.8879 14 6 7.5320 1.7491 3.8726 15 7 6.4845 0.9840 3.6963 16 14 8.0901 2.1847 5.6012 17 1 9.2898 3.0570 5.5290 18 1 6.9987 2.9024 6.3076 19 1 8.4252 0.9417 6.3413 20 6 6.2261 2.2717 1.3767 21 6 4.2653 -0.0899 -0.0016 22 6 3.5402 -1.2262 -0.0027 23 7 2.1801 -1.1826 -0.0005 24 1 1.6791 -2.0133 -0.0013 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3634 0.8899 0.5139 28 1 1.6342 2.1072 -0.0004 29 1 5.9891 2.2605 -2.0123 30 1 8.4355 2.2277 -1.8092 31 1 5.9984 0.6430 4.4633 32 1 5.6086 2.2840 2.2628 33 1 5.3446 -0.1306 -0.0025 34 1 4.0441 -2.1815 -0.0039 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001174660955.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:04 Heat of formation + Delta-G solvation = 21.797467 kcal Electronic energy + Delta-G solvation = -19844.563713 eV Core-core repulsion = 16656.771895 eV Total energy + Delta-G solvation = -3187.791818 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -47.06408 -40.14532 -37.60375 -35.02472 -33.47036 -32.87135 -30.66137 -29.63895 -27.95672 -26.66249 -25.17860 -22.72327 -22.05074 -21.18867 -19.44169 -18.29985 -17.33392 -16.25022 -15.89409 -15.49948 -15.06842 -14.64181 -14.48979 -14.36631 -13.84437 -13.36664 -13.09232 -12.80468 -12.74978 -12.53312 -12.25299 -11.93176 -11.62514 -11.52069 -11.38627 -11.14474 -10.88084 -10.53081 -10.37737 -10.01374 -9.38630 -9.23826 -9.12711 -8.85650 -7.49196 -6.83687 -6.68778 -6.48310 -4.33720 1.67592 1.86644 2.72540 2.89640 3.09814 3.16686 3.19895 3.21427 3.96287 4.15015 4.52819 4.60916 4.91303 5.10169 5.28668 5.48410 5.59908 5.67397 5.71303 5.84422 6.07208 6.12370 6.24391 6.53665 6.62626 6.64250 7.02029 7.11186 7.20745 7.29046 7.32043 7.41943 7.63060 7.73966 8.02853 8.10263 8.19796 8.55987 8.82953 8.89874 9.24484 10.18869 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.017331 B = 0.005972 C = 0.004866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.237623 B = 4687.356240 C = 5752.270676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.131 3.869 3 C -0.189 4.189 4 C 0.242 3.758 5 N -0.535 5.535 6 C 0.115 3.885 7 C -0.233 4.233 8 C -0.111 4.111 9 C -0.047 4.047 10 F -0.167 7.167 11 C 0.098 3.902 12 C -0.455 4.455 13 H 0.082 0.918 14 C 0.077 3.923 15 N -0.788 5.788 16 Si 0.909 3.091 17 H -0.259 1.259 18 H -0.271 1.271 19 H -0.274 1.274 20 C -0.160 4.160 21 C -0.217 4.217 22 C 0.103 3.897 23 N -0.614 5.614 24 H 0.408 0.592 25 H 0.080 0.920 26 H 0.069 0.931 27 H 0.087 0.913 28 H 0.138 0.862 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.279 0.721 32 H 0.125 0.875 33 H 0.143 0.857 34 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.720 -7.631 -3.997 15.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.022 3.978 3 C -0.215 4.215 4 C 0.071 3.929 5 N -0.246 5.246 6 C 0.016 3.984 7 C -0.255 4.255 8 C -0.131 4.131 9 C -0.067 4.067 10 F -0.146 7.146 11 C 0.095 3.905 12 C -0.485 4.485 13 H 0.100 0.900 14 C -0.141 4.141 15 N -0.413 5.413 16 Si 0.733 3.267 17 H -0.183 1.183 18 H -0.197 1.197 19 H -0.200 1.200 20 C -0.182 4.182 21 C -0.244 4.244 22 C -0.024 4.024 23 N -0.223 5.223 24 H 0.242 0.758 25 H 0.098 0.902 26 H 0.088 0.912 27 H 0.106 0.894 28 H 0.156 0.844 29 H 0.112 0.888 30 H 0.117 0.883 31 H 0.090 0.910 32 H 0.143 0.857 33 H 0.161 0.839 34 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -12.819 -6.707 -3.916 14.988 hybrid contribution 0.823 -0.861 0.848 1.462 sum -11.995 -7.568 -3.068 14.511 Atomic orbital electron populations 1.20889 0.88831 1.04042 1.03382 1.19995 0.93832 0.85852 0.98099 1.20281 0.92763 0.96483 1.12016 1.19137 0.92700 0.89107 0.91947 1.69251 1.07107 1.24851 1.23372 1.18524 0.88085 0.98406 0.93433 1.20322 0.92082 1.17148 0.95911 1.20314 0.94745 1.03269 0.94744 1.17898 0.76057 1.18578 0.94169 1.91248 1.30786 1.95427 1.97148 1.17462 0.91617 0.90015 0.91441 1.19491 1.01429 1.36080 0.91449 0.89970 1.25871 0.94026 0.92532 1.01672 1.69884 1.15791 1.22484 1.33101 0.86245 0.79959 0.79299 0.81172 1.18261 1.19658 1.19963 1.21272 0.93917 1.08328 0.94698 1.21828 1.01479 0.92195 1.08878 1.21454 0.82146 1.00131 0.98630 1.40924 1.05683 1.07614 1.68068 0.75849 0.90172 0.91232 0.89430 0.84428 0.88787 0.88294 0.91002 0.85683 0.83914 0.82862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 10.08 36.01 0.36 -0.39 16 2 C 0.13 1.47 6.81 -81.93 -0.56 0.91 16 3 C -0.19 -2.93 9.61 -39.35 -0.38 -3.31 16 4 C 0.24 4.86 6.63 -84.40 -0.56 4.30 16 5 N -0.53 -12.77 10.40 -8.70 -0.09 -12.86 16 6 C 0.11 2.97 4.15 -84.69 -0.35 2.62 16 7 C -0.23 -5.77 9.95 -38.80 -0.39 -6.15 16 8 C -0.11 -2.76 9.98 -39.66 -0.40 -3.15 16 9 C -0.05 -1.27 7.31 -38.51 -0.28 -1.56 16 10 F -0.17 -4.49 16.70 2.25 0.04 -4.45 16 11 C 0.10 2.82 5.57 -106.82 -0.60 2.23 16 12 C -0.46 -12.88 8.77 -37.82 -0.33 -13.21 16 13 H 0.08 2.30 7.73 -52.49 -0.41 1.90 16 14 C 0.08 2.01 5.12 -17.36 -0.09 1.92 16 15 N -0.79 -20.81 10.98 55.54 0.61 -20.20 16 16 Si 0.91 19.47 29.60 -169.99 -5.03 14.44 16 17 H -0.26 -5.55 7.11 56.52 0.40 -5.14 16 18 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 19 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 20 C -0.16 -4.48 8.63 -38.44 -0.33 -4.81 16 21 C -0.22 -4.00 9.26 -39.36 -0.36 -4.36 16 22 C 0.10 1.33 11.17 -16.88 -0.19 1.14 16 23 N -0.61 -6.15 5.28 -9.26 -0.05 -6.20 16 24 H 0.41 2.39 8.78 -40.82 -0.36 2.03 16 25 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.09 0.56 8.07 -51.93 -0.42 0.14 16 28 H 0.14 2.00 8.06 -52.49 -0.42 1.58 16 29 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 30 H 0.10 2.17 8.06 -52.49 -0.42 1.74 16 31 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 32 H 0.13 3.67 6.18 -52.48 -0.32 3.35 16 33 H 0.14 3.06 7.02 -52.49 -0.37 2.69 16 34 H 0.15 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 301.90 15.07 4.55 4.55 Total: -1.00 -33.85 301.90 -7.97 -41.82 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -3.55 Total: 6.74 kcal Atomic # 6 Polarization: -19.37 SS G_CDS: -4.45 Total: -23.82 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: 0.47 Total: -39.27 kcal Atomic # 9 Polarization: -4.49 SS G_CDS: 0.04 Total: -4.45 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.03 Total: 14.44 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -33.85 -7.97 -41.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174660955.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.614 kcal (2) G-P(sol) polarization free energy of solvation -33.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds