Wall clock time and date at job start Mon Mar 30 2020 01:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34808 * 119.64539 * 2 1 4 4 C 1.42009 * 119.23414 * 180.02562 * 3 2 1 5 5 N 1.33163 * 120.68332 * 179.72463 * 4 3 2 6 6 C 1.36357 * 119.99911 * 174.09879 * 5 4 3 7 7 C 1.40430 * 120.00984 * 92.86042 * 6 5 4 8 8 C 1.38107 * 120.34995 * 179.78801 * 7 6 5 9 9 C 1.38156 * 120.38949 * 0.46450 * 8 7 6 10 10 F 1.35103 * 119.98713 * 179.77001 * 9 8 7 11 11 C 1.41153 * 120.02578 * 359.78852 * 9 8 7 12 12 C 1.41327 * 120.17854 * 179.97438 * 11 9 8 13 13 H 1.08000 * 119.99892 * 24.63742 * 12 11 9 14 14 C 1.39813 * 120.00253 * 204.63571 * 12 11 9 15 15 N 1.30909 * 119.99694 * 18.18900 * 14 12 11 16 16 Si 1.86797 * 120.00114 * 198.18878 * 14 12 11 17 17 H 1.48505 * 109.47259 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.47336 * 119.99980 * 16 14 12 19 19 H 1.48501 * 109.47418 * 240.00042 * 16 14 12 20 20 C 1.39153 * 120.02034 * 273.13349 * 6 5 4 21 21 C 1.42009 * 118.63081 * 0.02562 * 4 3 2 22 22 C 1.34802 * 119.23745 * 0.02562 * 21 4 3 23 23 N 1.36077 * 119.64584 * 180.02562 * 2 1 3 24 24 H 0.96999 * 119.26096 * 0.02562 * 23 2 1 25 25 H 1.09001 * 109.46976 * 89.99401 * 1 2 3 26 26 H 1.08994 * 109.47053 * 209.99853 * 1 2 3 27 27 H 1.09002 * 109.47208 * 329.99536 * 1 2 3 28 28 H 1.07998 * 120.38168 * 359.97438 * 3 2 1 29 29 H 1.07999 * 119.82726 * 0.02562 * 7 6 5 30 30 H 1.07997 * 119.80853 * 180.21371 * 8 7 6 31 31 H 0.97005 * 119.99537 * 179.97438 * 15 14 12 32 32 H 1.08006 * 120.18936 * 359.95439 * 20 6 5 33 33 H 1.08002 * 120.38135 * 179.97438 * 21 4 3 34 34 H 1.07999 * 119.64570 * 179.97438 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1738 1.1716 0.0000 4 6 3.5939 1.1614 -0.0006 5 7 4.2816 2.3017 -0.0061 6 6 5.6396 2.2794 0.1149 7 6 6.4468 2.2585 -1.0341 8 6 7.8230 2.2403 -0.9198 9 6 8.4208 2.2328 0.3257 10 9 9.7678 2.2102 0.4281 11 6 7.6249 2.2482 1.4913 12 6 8.2330 2.2401 2.7670 13 1 9.2393 2.6132 2.8879 14 6 7.5320 1.7491 3.8726 15 7 6.4845 0.9840 3.6963 16 14 8.0901 2.1847 5.6012 17 1 9.2898 3.0570 5.5290 18 1 6.9987 2.9024 6.3076 19 1 8.4252 0.9417 6.3413 20 6 6.2261 2.2717 1.3767 21 6 4.2653 -0.0899 -0.0016 22 6 3.5402 -1.2262 -0.0027 23 7 2.1801 -1.1826 -0.0005 24 1 1.6791 -2.0133 -0.0013 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3634 0.8899 0.5139 28 1 1.6342 2.1072 -0.0004 29 1 5.9891 2.2605 -2.0123 30 1 8.4355 2.2277 -1.8092 31 1 5.9984 0.6430 4.4633 32 1 5.6086 2.2840 2.2628 33 1 5.3446 -0.1306 -0.0025 34 1 4.0441 -2.1815 -0.0039 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001174660955.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:03 Heat of formation + Delta-G solvation = -0.863344 kcal Electronic energy + Delta-G solvation = -19845.546360 eV Core-core repulsion = 16656.771895 eV Total energy + Delta-G solvation = -3188.774465 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.15579 -41.37674 -39.43117 -36.67986 -35.37267 -33.88949 -32.22544 -31.64642 -29.18221 -28.08886 -27.18554 -23.99179 -23.53611 -23.16681 -21.16413 -19.43084 -19.19866 -17.96366 -17.72404 -17.07633 -16.80864 -16.36465 -15.93694 -15.73603 -15.53988 -14.96208 -14.48303 -14.45176 -13.99688 -13.94389 -13.48743 -13.45208 -13.33553 -13.08742 -12.85491 -12.82998 -12.59504 -12.24352 -12.04242 -11.94192 -11.30837 -11.14472 -10.60750 -10.22910 -9.54350 -8.78133 -8.42765 -8.08985 -6.44797 0.45567 0.59532 0.80122 0.91121 1.32671 1.44742 1.49630 2.16725 2.17131 2.60254 2.80946 3.47862 3.68158 3.91718 4.04584 4.21714 4.30922 4.39350 4.49762 4.62161 4.67563 4.83104 4.85735 4.97917 5.14080 5.16649 5.26322 5.35296 5.37274 5.55407 5.68858 5.88696 6.02121 6.07360 6.10480 6.18603 6.49184 6.59260 6.76803 6.87282 7.63593 8.25197 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.017331 B = 0.005972 C = 0.004866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.237623 B = 4687.356240 C = 5752.270676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.177 3.823 3 C -0.239 4.239 4 C 0.252 3.748 5 N -0.620 5.620 6 C 0.143 3.857 7 C -0.244 4.244 8 C -0.100 4.100 9 C -0.085 4.085 10 F -0.171 7.171 11 C 0.076 3.924 12 C -0.496 4.496 13 H 0.071 0.929 14 C 0.037 3.963 15 N -0.810 5.810 16 Si 0.987 3.013 17 H -0.262 1.262 18 H -0.261 1.261 19 H -0.256 1.256 20 C -0.191 4.191 21 C -0.284 4.284 22 C 0.160 3.840 23 N -0.582 5.582 24 H 0.439 0.561 25 H 0.106 0.894 26 H 0.103 0.897 27 H 0.093 0.907 28 H 0.140 0.860 29 H 0.109 0.891 30 H 0.128 0.872 31 H 0.290 0.710 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.225 -10.671 -3.846 19.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.065 3.935 3 C -0.265 4.265 4 C 0.088 3.912 5 N -0.336 5.336 6 C 0.043 3.957 7 C -0.265 4.265 8 C -0.119 4.119 9 C -0.106 4.106 10 F -0.151 7.151 11 C 0.072 3.928 12 C -0.525 4.525 13 H 0.089 0.911 14 C -0.179 4.179 15 N -0.435 5.435 16 Si 0.806 3.194 17 H -0.186 1.186 18 H -0.185 1.185 19 H -0.180 1.180 20 C -0.213 4.213 21 C -0.312 4.312 22 C 0.030 3.970 23 N -0.191 5.191 24 H 0.280 0.720 25 H 0.124 0.876 26 H 0.122 0.878 27 H 0.111 0.889 28 H 0.157 0.843 29 H 0.127 0.873 30 H 0.146 0.854 31 H 0.100 0.900 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -16.406 -9.832 -3.792 19.499 hybrid contribution 1.484 -0.269 0.682 1.655 sum -14.922 -10.101 -3.111 18.285 Atomic orbital electron populations 1.21115 0.84243 1.06092 1.05570 1.20680 0.96297 0.84521 0.92009 1.20376 0.90814 0.98781 1.16566 1.19690 0.94549 0.88732 0.88227 1.69063 1.05408 1.26433 1.32722 1.18657 0.89815 0.94683 0.92553 1.20629 0.92148 1.17115 0.96590 1.20588 0.95146 1.01315 0.94857 1.18104 0.76049 1.21454 0.94974 1.91207 1.30873 1.95740 1.97234 1.17814 0.92387 0.90259 0.92336 1.19670 1.01657 1.38349 0.92838 0.91104 1.26779 0.93865 0.91653 1.05607 1.69939 1.16325 1.22362 1.34830 0.85110 0.79434 0.79533 0.75320 1.18554 1.18523 1.18011 1.21109 0.93436 1.11626 0.95113 1.21542 1.00211 0.93821 1.15644 1.21939 0.83025 1.00096 0.91910 1.41255 1.05068 1.09127 1.63601 0.72046 0.87610 0.87803 0.88859 0.84258 0.87285 0.85368 0.89986 0.88185 0.87997 0.78200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 10.08 71.24 0.72 -0.07 16 2 C 0.18 3.15 6.81 41.11 0.28 3.43 16 3 C -0.24 -7.16 9.61 22.42 0.22 -6.94 16 4 C 0.25 10.46 6.63 40.81 0.27 10.73 16 5 N -0.62 -31.69 10.40 -181.45 -1.89 -33.57 16 6 C 0.14 7.98 4.15 39.19 0.16 8.14 16 7 C -0.24 -12.71 9.95 22.77 0.23 -12.48 16 8 C -0.10 -5.18 9.98 22.22 0.22 -4.96 16 9 C -0.09 -4.98 7.31 22.97 0.17 -4.82 16 10 F -0.17 -9.75 16.70 44.97 0.75 -9.00 16 11 C 0.08 4.67 5.57 -21.29 -0.12 4.56 16 12 C -0.50 -30.00 8.77 23.41 0.21 -29.79 16 13 H 0.07 4.26 7.73 -2.91 -0.02 4.24 16 14 C 0.04 2.02 5.12 85.21 0.44 2.45 16 15 N -0.81 -44.65 10.98 21.80 0.24 -44.41 16 16 Si 0.99 41.00 29.60 68.60 2.03 43.03 16 17 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 18 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 19 H -0.26 -9.81 7.11 99.48 0.71 -9.11 16 20 C -0.19 -11.54 8.63 23.01 0.20 -11.35 16 21 C -0.28 -10.61 9.26 22.42 0.21 -10.40 16 22 C 0.16 3.54 11.17 83.24 0.93 4.47 16 23 N -0.58 -8.27 5.28 -183.20 -0.97 -9.23 16 24 H 0.44 1.65 8.78 -92.71 -0.81 0.83 16 25 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 26 H 0.10 0.15 8.14 -2.39 -0.02 0.13 16 27 H 0.09 0.71 8.07 -2.39 -0.02 0.69 16 28 H 0.14 4.05 8.06 -2.91 -0.02 4.02 16 29 H 0.11 5.22 8.06 -2.91 -0.02 5.20 16 30 H 0.13 5.71 8.06 -2.91 -0.02 5.69 16 31 H 0.29 14.19 8.30 -92.70 -0.77 13.43 16 32 H 0.10 6.40 6.18 -2.91 -0.02 6.38 16 33 H 0.10 4.68 7.02 -2.91 -0.02 4.66 16 34 H 0.20 2.69 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -85.40 301.90 4.61 -80.79 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: 0.33 Total: 19.44 kcal Atomic # 6 Polarization: -51.16 SS G_CDS: 4.12 Total: -47.04 kcal Atomic # 7 Polarization: -84.60 SS G_CDS: -2.62 Total: -87.21 kcal Atomic # 9 Polarization: -9.75 SS G_CDS: 0.75 Total: -9.00 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Total: -85.40 4.61 -80.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174660955.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.926 kcal (2) G-P(sol) polarization free energy of solvation -85.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds