Wall clock time and date at job start Mon Mar 30 2020 01:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38287 * 120.37263 * 2 1 4 4 N 1.31861 * 120.92749 * 179.97438 * 3 2 1 5 5 C 1.31810 * 121.80242 * 359.97438 * 4 3 2 6 6 C 1.38901 * 120.65610 * 0.02562 * 5 4 3 7 7 N 1.39736 * 120.49652 * 180.02562 * 6 5 4 8 8 C 1.39800 * 119.99622 * 330.70617 * 7 6 5 9 9 C 1.39434 * 119.91864 * 146.17364 * 8 7 6 10 10 C 1.38354 * 120.46680 * 179.97438 * 9 8 7 11 11 C 1.38019 * 120.28953 * 0.02562 * 10 9 8 12 12 F 1.35099 * 120.08627 * 179.97438 * 11 10 9 13 13 C 1.41011 * 119.82529 * 359.97438 * 11 10 9 14 14 C 1.41292 * 120.22815 * 180.02562 * 13 11 10 15 15 H 1.07999 * 120.00074 * 335.36823 * 14 13 11 16 16 C 1.39919 * 119.99919 * 155.36669 * 14 13 11 17 17 N 1.30853 * 120.00297 * 347.20517 * 16 14 13 18 18 Si 1.86802 * 119.99657 * 167.20252 * 16 14 13 19 19 H 1.48499 * 109.47085 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46891 * 120.00204 * 18 16 14 21 21 H 1.48501 * 109.47316 * 239.99951 * 18 16 14 22 22 C 1.38190 * 119.91602 * 325.89027 * 8 7 6 23 23 C 1.38479 * 120.38026 * 179.97438 * 2 1 3 24 24 H 1.08998 * 109.47072 * 90.00453 * 1 2 3 25 25 H 1.09005 * 109.46726 * 209.99989 * 1 2 3 26 26 H 1.08998 * 109.47646 * 329.99942 * 1 2 3 27 27 H 1.08001 * 119.53477 * 359.97438 * 3 2 1 28 28 H 1.08003 * 119.66958 * 179.97438 * 5 4 3 29 29 H 0.96999 * 119.99849 * 150.70175 * 7 6 5 30 30 H 1.08002 * 119.76215 * 359.97438 * 9 8 7 31 31 H 1.08000 * 119.85498 * 179.97438 * 10 9 8 32 32 H 0.96998 * 119.99839 * 179.97438 * 17 16 14 33 33 H 1.08001 * 120.14651 * 0.02892 * 22 8 7 34 34 H 1.07999 * 120.82447 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2062 1.1931 0.0000 4 7 3.5248 1.2058 0.0005 5 6 4.2302 0.0924 0.0015 6 6 3.5999 -1.1453 0.0016 7 7 4.3511 -2.3236 0.0032 8 6 5.6179 -2.3458 -0.5877 9 6 6.6229 -3.1478 -0.0484 10 6 7.8805 -3.1787 -0.6244 11 6 8.1540 -2.4143 -1.7405 12 9 9.3835 -2.4473 -2.2993 13 6 7.1466 -1.5988 -2.2960 14 6 7.4171 -0.8132 -3.4388 15 1 8.4305 -0.5118 -3.6595 16 6 6.3721 -0.4256 -4.2847 17 7 5.1951 -0.9857 -4.1696 18 14 6.6572 0.8915 -5.5783 19 1 8.0637 1.3622 -5.5038 20 1 6.3956 0.3262 -6.9263 21 1 5.7392 2.0328 -5.3335 22 6 5.8691 -1.5772 -1.7083 23 6 2.2074 -1.1946 0.0005 24 1 -0.3633 -0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8899 0.5138 27 1 1.6647 2.1275 -0.0004 28 1 5.3091 0.1431 0.0015 29 1 3.9935 -3.1261 0.4144 30 1 6.4182 -3.7490 0.8251 31 1 8.6518 -3.8032 -0.1982 32 1 4.4707 -0.7168 -4.7558 33 1 5.0892 -0.9592 -2.1282 34 1 1.6872 -2.1411 0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001174763029.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:18 Heat of formation + Delta-G solvation = -13.217225 kcal Electronic energy + Delta-G solvation = -20047.048390 eV Core-core repulsion = 16857.738221 eV Total energy + Delta-G solvation = -3189.310169 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.15685 -41.37163 -39.53111 -36.77356 -35.42610 -34.43990 -31.94447 -31.32181 -28.99759 -27.99467 -27.26296 -24.48533 -23.39384 -23.00872 -21.65683 -19.57835 -18.16086 -17.99907 -17.89357 -17.46056 -16.81675 -16.67335 -16.02531 -15.90712 -15.27552 -14.75446 -14.48997 -14.36334 -13.97274 -13.90063 -13.68629 -13.50939 -13.45996 -13.29151 -13.04292 -12.80528 -12.54628 -12.33237 -12.03123 -11.82536 -11.40525 -11.14687 -10.41950 -10.21331 -9.59665 -9.50313 -8.71727 -8.10174 -6.48478 0.20851 0.37203 0.85575 0.95757 1.32375 1.43844 1.47307 2.14518 2.42476 2.60919 2.94333 3.51282 3.72478 3.93425 4.01232 4.07118 4.15744 4.29770 4.32427 4.58838 4.64909 4.86042 4.89498 4.97057 5.05773 5.08264 5.20677 5.26620 5.28560 5.38734 5.65479 5.71433 5.86548 6.01944 6.04273 6.31079 6.54535 6.76034 6.86130 6.92523 7.16511 8.21243 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.015022 B = 0.007207 C = 0.005297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.479398 B = 3884.198369 C = 5284.838093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.098 4.098 3 C 0.033 3.967 4 N -0.482 5.482 5 C 0.029 3.971 6 C 0.150 3.850 7 N -0.672 5.672 8 C 0.171 3.829 9 C -0.237 4.237 10 C -0.096 4.096 11 C -0.078 4.078 12 F -0.172 7.172 13 C 0.071 3.929 14 C -0.486 4.486 15 H 0.070 0.930 16 C 0.037 3.963 17 N -0.812 5.812 18 Si 0.979 3.021 19 H -0.260 1.260 20 H -0.260 1.260 21 H -0.263 1.263 22 C -0.193 4.193 23 C -0.140 4.140 24 H 0.080 0.920 25 H 0.083 0.917 26 H 0.087 0.913 27 H 0.175 0.825 28 H 0.126 0.874 29 H 0.417 0.583 30 H 0.139 0.861 31 H 0.135 0.865 32 H 0.288 0.712 33 H 0.123 0.877 34 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.887 -0.232 6.816 12.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.100 4.100 3 C -0.126 4.126 4 N -0.190 5.190 5 C -0.131 4.131 6 C 0.048 3.952 7 N -0.297 5.297 8 C 0.075 3.925 9 C -0.258 4.258 10 C -0.116 4.116 11 C -0.099 4.099 12 F -0.151 7.151 13 C 0.067 3.933 14 C -0.515 4.515 15 H 0.089 0.911 16 C -0.178 4.178 17 N -0.438 5.438 18 Si 0.799 3.201 19 H -0.183 1.183 20 H -0.184 1.184 21 H -0.188 1.188 22 C -0.216 4.216 23 C -0.169 4.169 24 H 0.099 0.901 25 H 0.102 0.898 26 H 0.106 0.894 27 H 0.192 0.808 28 H 0.143 0.857 29 H 0.255 0.745 30 H 0.157 0.843 31 H 0.153 0.847 32 H 0.099 0.901 33 H 0.140 0.860 34 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -10.550 0.602 6.641 12.481 hybrid contribution 0.338 -0.652 -0.768 1.063 sum -10.212 -0.051 5.873 11.780 Atomic orbital electron populations 1.20786 0.87155 1.04572 1.03487 1.21110 0.99255 0.92449 0.97203 1.22970 0.89157 0.99104 1.01344 1.67465 1.09901 1.30791 1.10805 1.22331 0.99629 0.87650 1.03535 1.18870 0.92085 0.87606 0.96688 1.41756 1.15392 1.10535 1.61988 1.17679 0.85033 0.98068 0.91723 1.20305 0.91795 1.09248 1.04477 1.20636 0.97875 0.98721 0.94347 1.18196 0.81970 1.08128 1.01582 1.91228 1.41665 1.96298 1.85944 1.17790 0.91556 0.90947 0.92991 1.19708 0.95410 1.29167 1.07227 0.91134 1.26677 0.93808 0.97383 0.99962 1.69831 1.03147 1.35690 1.35094 0.85194 0.79799 0.77751 0.77340 1.18349 1.18390 1.18809 1.21052 0.98312 1.06555 0.95668 1.21440 0.90907 1.00338 1.04237 0.90144 0.89838 0.89400 0.80789 0.85667 0.74470 0.84292 0.84693 0.90137 0.85960 0.82412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.59 10.04 71.24 0.71 -0.87 16 2 C -0.10 -2.47 5.89 -19.79 -0.12 -2.59 16 3 C 0.03 0.98 10.85 84.70 0.92 1.90 16 4 N -0.48 -18.46 10.35 -195.27 -2.02 -20.49 16 5 C 0.03 1.19 9.28 84.85 0.79 1.97 16 6 C 0.15 5.31 5.93 38.31 0.23 5.54 16 7 N -0.67 -23.38 5.46 -180.30 -0.98 -24.36 16 8 C 0.17 7.34 5.81 38.15 0.22 7.56 16 9 C -0.24 -9.36 9.96 22.59 0.23 -9.14 16 10 C -0.10 -4.15 10.00 22.25 0.22 -3.93 16 11 C -0.08 -4.03 7.31 22.90 0.17 -3.86 16 12 F -0.17 -8.95 16.71 44.97 0.75 -8.20 16 13 C 0.07 3.92 5.60 -21.26 -0.12 3.81 16 14 C -0.49 -27.41 8.80 23.43 0.21 -27.20 16 15 H 0.07 3.99 7.70 -2.91 -0.02 3.97 16 16 C 0.04 1.94 5.25 85.25 0.45 2.38 16 17 N -0.81 -42.80 10.66 21.82 0.23 -42.57 16 18 Si 0.98 40.00 29.58 68.60 2.03 42.02 16 19 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 20 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 21 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 22 C -0.19 -9.91 6.65 22.84 0.15 -9.76 16 23 C -0.14 -3.93 9.78 22.59 0.22 -3.71 16 24 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.08 1.03 8.09 -2.38 -0.02 1.01 16 26 H 0.09 1.04 8.09 -2.39 -0.02 1.03 16 27 H 0.18 3.97 8.06 -2.91 -0.02 3.94 16 28 H 0.13 5.74 6.73 -2.91 -0.02 5.72 16 29 H 0.42 11.39 8.92 -92.71 -0.83 10.56 16 30 H 0.14 4.39 8.06 -2.91 -0.02 4.37 16 31 H 0.14 4.89 8.06 -2.91 -0.02 4.87 16 32 H 0.29 13.78 8.30 -92.71 -0.77 13.01 16 33 H 0.12 6.70 4.79 -2.91 -0.01 6.69 16 34 H 0.16 3.41 8.06 -2.91 -0.02 3.39 16 Total: -1.00 -65.18 298.23 4.60 -60.58 By element: Atomic # 1 Polarization: 30.59 SS G_CDS: 0.32 Total: 30.91 kcal Atomic # 6 Polarization: -42.17 SS G_CDS: 4.28 Total: -37.89 kcal Atomic # 7 Polarization: -84.64 SS G_CDS: -2.77 Total: -87.41 kcal Atomic # 9 Polarization: -8.95 SS G_CDS: 0.75 Total: -8.20 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 2.03 Total: 42.02 kcal Total: -65.18 4.60 -60.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174763029.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.362 kcal (2) G-P(sol) polarization free energy of solvation -65.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds