Wall clock time and date at job start Mon Mar 30 2020 01:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 N 1.28705 * 125.67596 * 2 1 4 4 C 1.30899 * 109.71303 * 179.97438 * 3 2 1 5 5 C 1.39902 * 108.25684 * 359.97438 * 4 3 2 6 6 N 1.40164 * 126.71198 * 179.73686 * 5 4 3 7 7 C 1.34775 * 119.99804 * 359.97438 * 6 5 4 8 8 O 1.21558 * 120.00262 * 0.02562 * 7 6 5 9 9 C 1.47865 * 119.99738 * 180.02562 * 7 6 5 10 10 C 1.39930 * 120.02565 * 359.72272 * 9 7 6 11 11 C 1.38326 * 120.35651 * 179.76572 * 10 9 7 12 12 C 1.37755 * 120.41088 * 0.51328 * 11 10 9 13 13 C 1.40746 * 120.04245 * 359.74548 * 12 11 10 14 14 C 1.41437 * 120.17791 * 180.02562 * 13 12 11 15 15 H 1.07997 * 119.99907 * 334.92244 * 14 13 12 16 16 C 1.39936 * 120.00155 * 154.92081 * 14 13 12 17 17 N 1.30824 * 120.00258 * 342.59574 * 16 14 13 18 18 Si 1.86802 * 120.00054 * 162.58986 * 16 14 13 19 19 H 1.48499 * 109.47438 * 90.00154 * 18 16 14 20 20 H 1.48495 * 109.47477 * 210.00288 * 18 16 14 21 21 H 1.48510 * 109.46972 * 330.00174 * 18 16 14 22 22 C 1.39009 * 120.02499 * 179.97438 * 9 7 6 23 23 N 1.31858 * 106.57343 * 359.97438 * 5 4 3 24 24 H 1.09001 * 109.46625 * 90.02407 * 1 2 3 25 25 H 1.08995 * 109.47321 * 210.02880 * 1 2 3 26 26 H 1.09001 * 109.46930 * 330.03077 * 1 2 3 27 27 H 1.08007 * 125.87064 * 179.97438 * 4 3 2 28 28 H 0.96997 * 119.99620 * 179.97438 * 6 5 4 29 29 H 1.07997 * 119.82049 * 0.02562 * 10 9 7 30 30 H 1.07995 * 119.79103 * 180.25872 * 11 10 9 31 31 H 1.07998 * 119.97686 * 179.76244 * 12 11 10 32 32 H 0.97000 * 120.00086 * 180.02562 * 17 16 14 33 33 H 1.07997 * 120.20040 * 359.95558 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2157 1.0455 0.0000 4 6 3.4742 0.6855 0.0006 5 6 3.5302 -0.7124 0.0015 6 7 4.6864 -1.5046 -0.0028 7 6 5.9020 -0.9226 -0.0091 8 8 5.9957 0.2893 -0.0106 9 6 7.1218 -1.7584 -0.0143 10 6 7.0147 -3.1536 -0.0067 11 6 8.1512 -3.9421 -0.0163 12 6 9.4013 -3.3634 -0.0228 13 6 9.5289 -1.9618 -0.0251 14 6 10.8110 -1.3646 -0.0323 15 1 11.6602 -1.9041 0.3604 16 6 10.9793 -0.0748 -0.5483 17 7 10.0605 0.4459 -1.3204 18 14 12.5158 0.9037 -0.1345 19 1 13.5654 0.6296 -1.1487 20 1 12.1944 2.3534 -0.1342 21 1 13.0093 0.5058 1.2085 22 6 8.3759 -1.1587 -0.0213 23 7 2.2825 -1.1388 0.0021 24 1 -0.3632 -0.0004 -1.0277 25 1 -0.3634 -0.8897 0.5142 26 1 -0.3633 0.8903 0.5134 27 1 4.3234 1.3529 0.0003 28 1 4.6117 -2.4717 -0.0013 29 1 6.0393 -3.6173 0.0024 30 1 8.0578 -5.0180 -0.0146 31 1 10.2839 -3.9857 -0.0265 32 1 10.1773 1.3398 -1.6784 33 1 8.4633 -0.0823 -0.0238 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188666504.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:45 Heat of formation + Delta-G solvation = 98.423239 kcal Electronic energy + Delta-G solvation = -19531.771069 eV Core-core repulsion = 16367.221955 eV Total energy + Delta-G solvation = -3164.549114 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.16991 -39.50744 -37.21092 -34.97730 -33.82994 -32.68057 -31.51663 -30.16567 -29.55784 -26.99192 -25.42116 -23.64660 -21.99328 -21.39772 -20.89688 -19.61757 -17.81472 -17.26979 -16.47074 -16.24340 -16.04221 -15.22521 -14.77467 -14.55737 -14.24696 -14.09165 -13.31361 -13.10750 -12.97779 -12.84565 -12.61278 -11.77411 -11.52733 -11.31724 -11.15426 -11.08337 -10.84100 -10.73907 -10.57032 -10.15672 -9.80140 -9.51933 -9.32433 -9.28095 -8.34544 -7.75624 -7.62177 -6.87764 -4.49432 1.53400 2.03503 2.05342 2.69714 2.78650 3.04693 3.06780 3.12048 3.24948 3.72986 3.87123 4.35045 4.53920 4.94424 4.95714 5.16307 5.23522 5.49021 5.49508 5.84368 6.01126 6.07266 6.17070 6.61249 6.73466 6.79658 6.89105 6.89894 7.11777 7.25879 7.49818 7.60537 7.73441 7.86931 8.06383 8.22725 8.39939 8.53795 8.71928 8.73717 10.07076 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.027379 B = 0.004286 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.445269 B = 6531.346507 C = 7468.075502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.127 3.873 2 N -0.237 5.237 3 N -0.237 5.237 4 C -0.039 4.039 5 C 0.283 3.717 6 N -0.632 5.632 7 C 0.576 3.424 8 O -0.518 6.518 9 C -0.126 4.126 10 C -0.219 4.219 11 C -0.094 4.094 12 C -0.208 4.208 13 C 0.099 3.901 14 C -0.457 4.457 15 H 0.083 0.917 16 C 0.073 3.927 17 N -0.782 5.782 18 Si 0.911 3.089 19 H -0.269 1.269 20 H -0.274 1.274 21 H -0.260 1.260 22 C -0.085 4.085 23 N -0.323 5.323 24 H 0.079 0.921 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.215 0.785 28 H 0.419 0.581 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.286 0.714 33 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.567 -1.457 1.769 11.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.014 4.014 2 N -0.138 5.138 3 N -0.077 5.077 4 C -0.228 4.228 5 C 0.023 3.977 6 N -0.284 5.284 7 C 0.367 3.633 8 O -0.393 6.393 9 C -0.130 4.130 10 C -0.239 4.239 11 C -0.112 4.112 12 C -0.228 4.228 13 C 0.096 3.904 14 C -0.486 4.486 15 H 0.101 0.899 16 C -0.146 4.146 17 N -0.406 5.406 18 Si 0.735 3.265 19 H -0.194 1.194 20 H -0.199 1.199 21 H -0.183 1.183 22 C -0.105 4.105 23 N -0.164 5.164 24 H 0.097 0.903 25 H 0.114 0.886 26 H 0.114 0.886 27 H 0.231 0.769 28 H 0.257 0.743 29 H 0.109 0.891 30 H 0.114 0.886 31 H 0.116 0.884 32 H 0.097 0.903 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -12.908 -0.429 1.615 13.016 hybrid contribution 1.365 -0.159 -0.009 1.374 sum -11.543 -0.588 1.606 11.669 Atomic orbital electron populations 1.21826 0.70694 1.04948 1.03899 1.50661 1.07364 0.98779 1.56989 1.73370 1.03384 1.16848 1.14115 1.25066 0.94092 0.93796 1.09802 1.20151 0.87194 0.91777 0.98588 1.42935 1.01766 1.10234 1.73416 1.19080 0.82230 0.88032 0.73911 1.90618 1.86106 1.14462 1.48075 1.19190 0.91227 0.92740 1.09835 1.20348 0.96794 0.92023 1.14755 1.20440 0.92889 0.97402 1.00513 1.21142 0.95623 0.94854 1.11160 1.17583 0.93138 0.90829 0.88836 1.19601 0.94674 0.99044 1.35270 0.89933 1.25973 0.98289 0.97738 0.92618 1.69766 1.33527 1.16238 1.21106 0.86265 0.81163 0.78892 0.80227 1.19408 1.19874 1.18333 1.21645 0.89242 1.00989 0.98635 1.78028 0.99659 1.09468 1.29286 0.90251 0.88643 0.88579 0.76877 0.74308 0.89050 0.88622 0.88397 0.90276 0.84578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 1.04 11.72 59.85 0.70 1.74 16 2 N -0.24 -3.41 4.69 -16.63 -0.08 -3.49 16 3 N -0.24 -3.86 12.01 30.64 0.37 -3.49 16 4 C -0.04 -0.70 10.85 -17.33 -0.19 -0.89 16 5 C 0.28 5.00 8.18 -154.04 -1.26 3.74 16 6 N -0.63 -11.04 5.40 -11.96 -0.06 -11.10 16 7 C 0.58 11.97 7.74 -12.32 -0.10 11.87 16 8 O -0.52 -11.84 13.54 5.32 0.07 -11.76 16 9 C -0.13 -2.82 5.87 -105.04 -0.62 -3.43 16 10 C -0.22 -4.36 9.55 -38.92 -0.37 -4.73 16 11 C -0.09 -1.90 10.01 -39.73 -0.40 -2.30 16 12 C -0.21 -4.70 9.78 -38.81 -0.38 -5.08 16 13 C 0.10 2.49 5.57 -106.87 -0.59 1.89 16 14 C -0.46 -11.51 9.05 -37.73 -0.34 -11.85 16 15 H 0.08 1.97 7.90 -52.49 -0.41 1.56 16 16 C 0.07 1.78 5.14 -17.35 -0.09 1.69 16 17 N -0.78 -19.86 10.97 55.55 0.61 -19.25 16 18 Si 0.91 18.10 29.59 -169.99 -5.03 13.07 16 19 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 20 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 21 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 22 C -0.09 -2.14 8.23 -38.44 -0.32 -2.46 16 23 N -0.32 -5.27 12.70 31.44 0.40 -4.87 16 24 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.21 3.96 5.97 -52.48 -0.31 3.64 16 28 H 0.42 6.29 6.84 -40.82 -0.28 6.01 16 29 H 0.09 1.49 6.38 -52.49 -0.33 1.16 16 30 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 31 H 0.10 2.05 8.06 -52.49 -0.42 1.63 16 32 H 0.29 6.67 8.30 -40.82 -0.34 6.33 16 33 H 0.14 3.69 5.76 -52.49 -0.30 3.38 16 LS Contribution 293.61 15.07 4.42 4.42 Total: -1.00 -29.30 293.61 -6.14 -35.45 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -2.89 Total: 10.85 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -3.95 Total: -9.81 kcal Atomic # 7 Polarization: -43.44 SS G_CDS: 1.23 Total: -42.21 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: 0.07 Total: -11.76 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.03 Total: 13.07 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.30 -6.14 -35.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188666504.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.870 kcal (2) G-P(sol) polarization free energy of solvation -29.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds