Wall clock time and date at job start Mon Mar 30 2020 01:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 N 1.28705 * 125.67596 * 2 1 4 4 C 1.30899 * 109.71303 * 179.97438 * 3 2 1 5 5 C 1.39902 * 108.25684 * 359.97438 * 4 3 2 6 6 N 1.40164 * 126.71198 * 179.73686 * 5 4 3 7 7 C 1.34775 * 119.99804 * 359.97438 * 6 5 4 8 8 O 1.21558 * 120.00262 * 0.02562 * 7 6 5 9 9 C 1.47865 * 119.99738 * 180.02562 * 7 6 5 10 10 C 1.39930 * 120.02565 * 359.72272 * 9 7 6 11 11 C 1.38326 * 120.35651 * 179.76572 * 10 9 7 12 12 C 1.37755 * 120.41088 * 0.51328 * 11 10 9 13 13 C 1.40746 * 120.04245 * 359.74548 * 12 11 10 14 14 C 1.41437 * 120.17791 * 180.02562 * 13 12 11 15 15 H 1.07997 * 119.99907 * 334.92244 * 14 13 12 16 16 C 1.39936 * 120.00155 * 154.92081 * 14 13 12 17 17 N 1.30824 * 120.00258 * 342.59574 * 16 14 13 18 18 Si 1.86802 * 120.00054 * 162.58986 * 16 14 13 19 19 H 1.48499 * 109.47438 * 90.00154 * 18 16 14 20 20 H 1.48495 * 109.47477 * 210.00288 * 18 16 14 21 21 H 1.48510 * 109.46972 * 330.00174 * 18 16 14 22 22 C 1.39009 * 120.02499 * 179.97438 * 9 7 6 23 23 N 1.31858 * 106.57343 * 359.97438 * 5 4 3 24 24 H 1.09001 * 109.46625 * 90.02407 * 1 2 3 25 25 H 1.08995 * 109.47321 * 210.02880 * 1 2 3 26 26 H 1.09001 * 109.46930 * 330.03077 * 1 2 3 27 27 H 1.08007 * 125.87064 * 179.97438 * 4 3 2 28 28 H 0.96997 * 119.99620 * 179.97438 * 6 5 4 29 29 H 1.07997 * 119.82049 * 0.02562 * 10 9 7 30 30 H 1.07995 * 119.79103 * 180.25872 * 11 10 9 31 31 H 1.07998 * 119.97686 * 179.76244 * 12 11 10 32 32 H 0.97000 * 120.00086 * 180.02562 * 17 16 14 33 33 H 1.07997 * 120.20040 * 359.95558 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2157 1.0455 0.0000 4 6 3.4742 0.6855 0.0006 5 6 3.5302 -0.7124 0.0015 6 7 4.6864 -1.5046 -0.0028 7 6 5.9020 -0.9226 -0.0091 8 8 5.9957 0.2893 -0.0106 9 6 7.1218 -1.7584 -0.0143 10 6 7.0147 -3.1536 -0.0067 11 6 8.1512 -3.9421 -0.0163 12 6 9.4013 -3.3634 -0.0228 13 6 9.5289 -1.9618 -0.0251 14 6 10.8110 -1.3646 -0.0323 15 1 11.6602 -1.9041 0.3604 16 6 10.9793 -0.0748 -0.5483 17 7 10.0605 0.4459 -1.3204 18 14 12.5158 0.9037 -0.1345 19 1 13.5654 0.6296 -1.1487 20 1 12.1944 2.3534 -0.1342 21 1 13.0093 0.5058 1.2085 22 6 8.3759 -1.1587 -0.0213 23 7 2.2825 -1.1388 0.0021 24 1 -0.3632 -0.0004 -1.0277 25 1 -0.3634 -0.8897 0.5142 26 1 -0.3633 0.8903 0.5134 27 1 4.3234 1.3529 0.0003 28 1 4.6117 -2.4717 -0.0013 29 1 6.0393 -3.6173 0.0024 30 1 8.0578 -5.0180 -0.0146 31 1 10.2839 -3.9857 -0.0265 32 1 10.1773 1.3398 -1.6784 33 1 8.4633 -0.0823 -0.0238 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188666504.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:45 Heat of formation + Delta-G solvation = 79.650397 kcal Electronic energy + Delta-G solvation = -19532.585120 eV Core-core repulsion = 16367.221955 eV Total energy + Delta-G solvation = -3165.363166 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.45472 -41.11780 -38.92823 -36.45620 -35.57871 -33.83264 -32.87776 -31.82641 -31.29681 -28.07496 -27.19316 -25.22190 -23.26393 -22.98635 -22.47953 -21.19322 -19.50372 -18.65125 -17.90610 -17.53752 -17.44210 -16.91444 -16.44650 -16.06403 -15.72594 -15.55507 -15.04551 -14.54590 -14.28651 -14.02290 -13.62021 -13.49291 -12.98419 -12.85705 -12.77404 -12.58160 -12.44705 -12.19593 -12.04628 -11.89733 -11.52071 -11.05502 -10.99083 -10.81835 -9.73006 -9.43909 -9.38326 -8.65496 -6.36704 0.06776 0.51497 0.91055 1.01009 1.30076 1.40015 1.49468 1.55431 1.94416 2.09225 2.21518 2.77700 3.22248 3.56789 3.68669 4.00075 4.34451 4.38238 4.42359 4.51886 4.57368 4.68124 4.72455 4.90290 5.08907 5.17076 5.30531 5.35094 5.49799 5.64546 5.82393 5.90885 6.04625 6.21197 6.31275 6.59071 6.87469 6.90656 6.93561 7.00406 8.31359 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.027379 B = 0.004286 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.445269 B = 6531.346507 C = 7468.075502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.218 5.218 3 N -0.234 5.234 4 C -0.066 4.066 5 C 0.264 3.736 6 N -0.615 5.615 7 C 0.577 3.423 8 O -0.547 6.547 9 C -0.133 4.133 10 C -0.198 4.198 11 C -0.093 4.093 12 C -0.212 4.212 13 C 0.068 3.932 14 C -0.495 4.495 15 H 0.085 0.915 16 C 0.032 3.968 17 N -0.823 5.823 18 Si 0.980 3.020 19 H -0.259 1.259 20 H -0.273 1.273 21 H -0.256 1.256 22 C -0.121 4.121 23 N -0.318 5.318 24 H 0.102 0.898 25 H 0.118 0.882 26 H 0.119 0.881 27 H 0.198 0.802 28 H 0.431 0.569 29 H 0.137 0.863 30 H 0.140 0.860 31 H 0.110 0.890 32 H 0.288 0.712 33 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.640 -3.206 2.064 14.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.122 5.122 3 N -0.076 5.076 4 C -0.252 4.252 5 C 0.006 3.994 6 N -0.266 5.266 7 C 0.368 3.632 8 O -0.423 6.423 9 C -0.137 4.137 10 C -0.217 4.217 11 C -0.111 4.111 12 C -0.232 4.232 13 C 0.066 3.934 14 C -0.524 4.524 15 H 0.103 0.897 16 C -0.183 4.183 17 N -0.448 5.448 18 Si 0.801 3.199 19 H -0.184 1.184 20 H -0.197 1.197 21 H -0.179 1.179 22 C -0.141 4.141 23 N -0.160 5.160 24 H 0.120 0.880 25 H 0.136 0.864 26 H 0.137 0.863 27 H 0.215 0.785 28 H 0.272 0.728 29 H 0.154 0.846 30 H 0.158 0.842 31 H 0.128 0.872 32 H 0.098 0.902 33 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -15.007 -2.224 1.913 15.292 hybrid contribution 1.653 0.247 -0.090 1.674 sum -13.354 -1.977 1.822 13.622 Atomic orbital electron populations 1.22493 0.67113 1.07284 1.06148 1.51393 1.09071 0.97801 1.53938 1.73352 1.03014 1.17334 1.13948 1.24847 0.94474 0.94055 1.11829 1.20118 0.87486 0.91623 1.00192 1.42512 1.00890 1.10715 1.72522 1.18871 0.82921 0.87494 0.73915 1.90617 1.86641 1.15678 1.49365 1.19405 0.90840 0.94233 1.09194 1.20876 0.99031 0.90802 1.11032 1.20918 0.91710 0.99729 0.98765 1.21455 0.97529 0.93972 1.10216 1.17913 0.93321 0.92315 0.89865 1.19860 0.95068 1.00413 1.37107 0.89736 1.26795 1.01233 0.98365 0.91919 1.69858 1.35666 1.16655 1.22666 0.85228 0.77437 0.77146 0.80114 1.18385 1.19737 1.17920 1.21451 0.90891 0.99798 1.01990 1.77980 0.99073 1.10324 1.28656 0.87973 0.86356 0.86304 0.78501 0.72800 0.84553 0.84210 0.87185 0.90181 0.87689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.34 11.72 127.77 1.50 2.84 16 2 N -0.22 -5.73 4.69 -206.52 -0.97 -6.70 16 3 N -0.23 -7.33 12.01 -56.96 -0.68 -8.01 16 4 C -0.07 -2.37 10.85 85.23 0.92 -1.44 16 5 C 0.26 9.06 8.18 133.01 1.09 10.15 16 6 N -0.61 -20.73 5.40 -310.04 -1.67 -22.40 16 7 C 0.58 24.24 7.74 86.79 0.67 24.91 16 8 O -0.55 -26.15 13.54 -3.90 -0.05 -26.20 16 9 C -0.13 -5.95 5.87 -20.13 -0.12 -6.07 16 10 C -0.20 -7.33 9.55 22.70 0.22 -7.11 16 11 C -0.09 -3.49 10.01 22.18 0.22 -3.27 16 12 C -0.21 -9.43 9.78 22.77 0.22 -9.21 16 13 C 0.07 3.55 5.57 -21.32 -0.12 3.43 16 14 C -0.50 -26.01 9.05 23.47 0.21 -25.80 16 15 H 0.08 4.19 7.90 -2.91 -0.02 4.17 16 16 C 0.03 1.63 5.14 85.25 0.44 2.07 16 17 N -0.82 -44.27 10.97 21.82 0.24 -44.03 16 18 Si 0.98 38.47 29.59 68.60 2.03 40.50 16 19 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 20 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 21 H -0.26 -9.72 7.11 99.48 0.71 -9.02 16 22 C -0.12 -6.36 8.23 23.01 0.19 -6.17 16 23 N -0.32 -9.63 12.70 -54.44 -0.69 -10.32 16 24 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.20 7.70 5.97 -2.91 -0.02 7.68 16 28 H 0.43 11.76 6.84 -92.71 -0.63 11.13 16 29 H 0.14 3.79 6.38 -2.91 -0.02 3.77 16 30 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 31 H 0.11 4.51 8.06 -2.91 -0.02 4.49 16 32 H 0.29 14.27 8.30 -92.71 -0.77 13.50 16 33 H 0.11 6.13 5.76 -2.91 -0.02 6.11 16 Total: -1.00 -67.04 293.61 4.18 -62.86 By element: Atomic # 1 Polarization: 29.44 SS G_CDS: 0.54 Total: 29.98 kcal Atomic # 6 Polarization: -21.13 SS G_CDS: 5.45 Total: -15.68 kcal Atomic # 7 Polarization: -87.68 SS G_CDS: -3.78 Total: -91.46 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -0.05 Total: -26.20 kcal Atomic # 14 Polarization: 38.47 SS G_CDS: 2.03 Total: 40.50 kcal Total: -67.04 4.18 -62.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188666504.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.511 kcal (2) G-P(sol) polarization free energy of solvation -67.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds