Wall clock time and date at job start Mon Mar 30 2020 01:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36908 * 120.00360 * 2 1 4 4 H 1.08000 * 120.00144 * 158.02606 * 3 2 1 5 5 C 1.39024 * 119.99932 * 338.02973 * 3 2 1 6 6 N 1.31379 * 119.99951 * 343.81371 * 5 3 2 7 7 Si 1.86795 * 120.00250 * 163.80862 * 5 3 2 8 8 H 1.48507 * 109.46939 * 94.98287 * 7 5 3 9 9 H 1.48493 * 109.47501 * 214.98611 * 7 5 3 10 10 H 1.48503 * 109.47054 * 334.98649 * 7 5 3 11 11 C 1.34778 * 119.99768 * 180.27096 * 2 1 3 12 12 O 1.21604 * 120.00076 * 185.51356 * 11 2 1 13 13 C 1.47644 * 119.99950 * 5.51949 * 11 2 1 14 14 C 1.41184 * 126.33065 * 185.70415 * 13 11 2 15 15 C 1.36693 * 105.45082 * 179.84635 * 14 13 11 16 16 C 1.47958 * 126.59469 * 180.12310 * 15 14 13 17 17 C 1.39931 * 120.91832 * 0.04174 * 16 15 14 18 18 C 1.37928 * 118.99834 * 179.80129 * 17 16 15 19 19 N 1.31949 * 120.89597 * 0.48395 * 18 17 16 20 20 C 1.31945 * 122.04302 * 359.74202 * 19 18 17 21 21 C 1.37924 * 120.90047 * 0.02562 * 20 19 18 22 22 N 1.36419 * 106.81314 * 0.40975 * 15 14 13 23 23 H 0.96996 * 125.01336 * 179.76197 * 22 15 14 24 24 N 1.28455 * 109.97636 * 359.73570 * 22 15 14 25 25 H 1.09001 * 109.46984 * 93.76556 * 1 2 3 26 26 H 1.09000 * 109.47085 * 213.76427 * 1 2 3 27 27 H 1.08994 * 109.46757 * 333.76727 * 1 2 3 28 28 H 0.97000 * 120.00426 * 180.02562 * 6 5 3 29 29 H 1.08005 * 127.27945 * 0.02562 * 14 13 11 30 30 H 1.07998 * 120.50134 * 359.97438 * 17 16 15 31 31 H 1.08002 * 119.54916 * 180.22810 * 18 17 16 32 32 H 1.07998 * 119.54821 * 180.02562 * 20 19 18 33 33 H 1.07996 * 120.49795 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1856 0.0000 4 1 3.1708 1.2195 0.3500 5 6 1.5303 2.3459 -0.4504 6 7 0.4285 2.2687 -1.1618 7 14 2.2646 4.0147 -0.0442 8 1 3.1276 4.4623 -1.1668 9 1 1.1723 4.9990 0.1634 10 1 3.0779 3.9095 1.1939 11 6 2.1389 -1.1672 -0.0055 12 8 3.3507 -1.1702 0.0957 13 6 1.4057 -2.4423 -0.1345 14 6 1.9588 -3.7381 -0.0434 15 6 0.9092 -4.5954 -0.2219 16 6 0.9664 -6.0738 -0.2121 17 6 2.1766 -6.7452 -0.0053 18 6 2.1837 -8.1244 0.0001 19 7 1.0725 -8.8084 -0.1954 20 6 -0.0883 -8.2149 -0.3985 21 6 -0.1872 -6.8394 -0.4152 22 7 -0.2001 -3.8258 -0.4172 23 1 -1.0941 -4.1677 -0.5741 24 7 0.1139 -2.5814 -0.3621 25 1 -0.3633 -0.0675 -1.0255 26 1 -0.3633 -0.8543 0.5712 27 1 -0.3632 0.9218 0.4542 28 1 -0.0035 3.0782 -1.4764 29 1 2.9923 -3.9973 0.1332 30 1 3.0909 -6.1917 0.1504 31 1 3.1122 -8.6516 0.1626 32 1 -0.9731 -8.8145 -0.5537 33 1 -1.1407 -6.3604 -0.5816 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189323422.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:28 Heat of formation + Delta-G solvation = 93.503794 kcal Electronic energy + Delta-G solvation = -19609.817342 eV Core-core repulsion = 16445.054905 eV Total energy + Delta-G solvation = -3164.762437 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.27253 -40.07933 -38.06214 -34.68051 -33.74709 -31.99096 -31.61671 -30.99175 -29.44583 -26.29678 -25.02232 -24.06636 -23.73568 -22.36675 -20.91609 -19.03789 -18.19763 -16.89115 -16.48669 -16.23050 -15.93482 -15.46327 -15.18363 -14.64030 -14.09104 -14.05799 -13.93696 -13.57992 -13.47765 -13.02114 -12.46871 -11.83720 -11.76795 -11.53649 -11.22992 -10.93807 -10.70430 -10.45663 -10.31539 -10.05383 -9.74424 -9.43916 -9.04088 -8.91985 -8.62408 -8.42643 -7.67711 -6.38271 -3.87309 0.60559 0.89398 2.23248 2.60090 2.98547 3.18838 3.24225 3.31015 3.67798 4.06081 4.20942 4.24180 4.38007 4.50517 4.73407 4.84841 4.89548 5.08794 5.17901 5.29753 5.47060 5.60335 5.62857 5.92988 6.01065 6.18515 6.40783 6.57900 6.75278 6.97665 7.17324 7.34215 7.53130 7.72528 8.09803 8.21266 8.49292 9.14448 9.38625 9.97605 10.65208 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.052946 B = 0.003707 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.709761 B = 7551.744036 C = 8021.355823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.418 5.418 3 C -0.307 4.307 4 H 0.104 0.896 5 C 0.032 3.968 6 N -0.867 5.867 7 Si 0.928 3.072 8 H -0.277 1.277 9 H -0.282 1.282 10 H -0.267 1.267 11 C 0.508 3.492 12 O -0.587 6.587 13 C 0.025 3.975 14 C -0.148 4.148 15 C 0.019 3.981 16 C 0.043 3.957 17 C -0.156 4.156 18 C 0.107 3.893 19 N -0.493 5.493 20 C 0.106 3.894 21 C -0.179 4.179 22 N -0.391 5.391 23 H 0.439 0.561 24 N -0.244 5.244 25 H 0.055 0.945 26 H 0.045 0.955 27 H 0.067 0.933 28 H 0.269 0.731 29 H 0.162 0.838 30 H 0.144 0.856 31 H 0.160 0.840 32 H 0.157 0.843 33 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.453 -16.018 1.511 16.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.135 5.135 3 C -0.436 4.436 4 H 0.122 0.878 5 C -0.172 4.172 6 N -0.505 5.505 7 Si 0.754 3.246 8 H -0.203 1.203 9 H -0.207 1.207 10 H -0.191 1.191 11 C 0.294 3.706 12 O -0.471 6.471 13 C -0.134 4.134 14 C -0.177 4.177 15 C -0.105 4.105 16 C 0.034 3.966 17 C -0.177 4.177 18 C -0.049 4.049 19 N -0.202 5.202 20 C -0.050 4.050 21 C -0.199 4.199 22 N -0.106 5.106 23 H 0.283 0.717 24 N -0.080 5.080 25 H 0.073 0.927 26 H 0.063 0.937 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.179 0.821 30 H 0.162 0.838 31 H 0.178 0.822 32 H 0.174 0.826 33 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.923 -16.095 1.315 16.882 hybrid contribution 0.157 1.185 -0.010 1.195 sum -4.766 -14.910 1.305 15.707 Atomic orbital electron populations 1.21646 0.80167 0.99740 1.01367 1.43507 1.06200 1.04413 1.59353 1.19748 0.99544 0.83493 1.40805 0.87841 1.25406 0.96543 1.00286 0.95010 1.70048 1.19300 1.29597 1.31597 0.85897 0.78579 0.80855 0.79298 1.20251 1.20711 1.19129 1.16718 0.86226 0.81409 0.86200 1.90609 1.12939 1.86043 1.57531 1.22530 0.89211 0.96265 1.05419 1.21743 0.99400 0.90611 1.05914 1.19632 0.88644 0.90598 1.11645 1.18309 0.93991 0.89124 0.95221 1.22216 0.98276 0.95818 1.01345 1.22720 0.96746 0.90911 0.94550 1.67662 0.99008 1.41438 1.12117 1.22611 0.95858 0.91728 0.94816 1.22078 0.98439 0.95642 1.03784 1.43686 1.09877 1.03450 1.53547 0.71746 1.74032 1.17007 0.98154 1.18761 0.92678 0.93712 0.91420 0.92041 0.82052 0.83807 0.82247 0.82566 0.85188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.74 7.64 59.85 0.46 3.20 16 2 N -0.42 -11.26 3.01 -123.34 -0.37 -11.63 16 3 C -0.31 -8.70 9.29 -14.99 -0.14 -8.84 16 4 H 0.10 3.02 7.39 -52.49 -0.39 2.63 16 5 C 0.03 0.86 4.97 -17.45 -0.09 0.78 16 6 N -0.87 -23.29 10.89 55.50 0.60 -22.68 16 7 Si 0.93 20.54 29.58 -169.99 -5.03 15.51 16 8 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 9 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 10 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 11 C 0.51 13.27 7.62 -12.42 -0.09 13.18 16 12 O -0.59 -16.80 16.60 5.27 0.09 -16.71 16 13 C 0.03 0.54 6.73 -82.88 -0.56 -0.02 16 14 C -0.15 -2.58 10.20 -39.02 -0.40 -2.98 16 15 C 0.02 0.26 7.01 -82.40 -0.58 -0.31 16 16 C 0.04 0.50 5.91 -104.65 -0.62 -0.12 16 17 C -0.16 -1.62 9.66 -39.06 -0.38 -2.00 16 18 C 0.11 1.03 11.17 -17.61 -0.20 0.84 16 19 N -0.49 -5.31 10.35 -13.36 -0.14 -5.45 16 20 C 0.11 0.97 11.17 -17.62 -0.20 0.78 16 21 C -0.18 -1.66 9.80 -39.06 -0.38 -2.05 16 22 N -0.39 -5.51 6.82 33.31 0.23 -5.28 16 23 H 0.44 4.30 8.20 -190.45 -1.56 2.74 16 24 N -0.24 -4.56 8.94 33.36 0.30 -4.26 16 25 H 0.05 1.36 7.85 -51.93 -0.41 0.96 16 26 H 0.04 0.96 5.85 -51.93 -0.30 0.66 16 27 H 0.07 1.67 6.75 -51.93 -0.35 1.31 16 28 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 29 H 0.16 2.59 7.48 -52.48 -0.39 2.19 16 30 H 0.14 1.33 7.24 -52.49 -0.38 0.95 16 31 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 32 H 0.16 0.97 8.06 -52.49 -0.42 0.55 16 33 H 0.13 0.87 7.33 -52.49 -0.38 0.49 16 LS Contribution 291.17 15.07 4.39 4.39 Total: -1.00 -33.68 291.17 -7.25 -40.93 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -4.15 Total: 2.75 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: -3.17 Total: 2.44 kcal Atomic # 7 Polarization: -49.92 SS G_CDS: 0.62 Total: -49.30 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: 0.09 Total: -16.71 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.03 Total: 15.51 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -33.68 -7.25 -40.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189323422.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.430 kcal (2) G-P(sol) polarization free energy of solvation -33.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds