Wall clock time and date at job start Mon Mar 30 2020 01:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36908 * 120.00360 * 2 1 4 4 H 1.08000 * 120.00144 * 158.02606 * 3 2 1 5 5 C 1.39024 * 119.99932 * 338.02973 * 3 2 1 6 6 N 1.31379 * 119.99951 * 343.81371 * 5 3 2 7 7 Si 1.86795 * 120.00250 * 163.80862 * 5 3 2 8 8 H 1.48507 * 109.46939 * 94.98287 * 7 5 3 9 9 H 1.48493 * 109.47501 * 214.98611 * 7 5 3 10 10 H 1.48503 * 109.47054 * 334.98649 * 7 5 3 11 11 C 1.34778 * 119.99768 * 180.27096 * 2 1 3 12 12 O 1.21604 * 120.00076 * 185.51356 * 11 2 1 13 13 C 1.47644 * 119.99950 * 5.51949 * 11 2 1 14 14 C 1.41184 * 126.33065 * 185.70415 * 13 11 2 15 15 C 1.36693 * 105.45082 * 179.84635 * 14 13 11 16 16 C 1.47958 * 126.59469 * 180.12310 * 15 14 13 17 17 C 1.39931 * 120.91832 * 0.04174 * 16 15 14 18 18 C 1.37928 * 118.99834 * 179.80129 * 17 16 15 19 19 N 1.31949 * 120.89597 * 0.48395 * 18 17 16 20 20 C 1.31945 * 122.04302 * 359.74202 * 19 18 17 21 21 C 1.37924 * 120.90047 * 0.02562 * 20 19 18 22 22 N 1.36419 * 106.81314 * 0.40975 * 15 14 13 23 23 H 0.96996 * 125.01336 * 179.76197 * 22 15 14 24 24 N 1.28455 * 109.97636 * 359.73570 * 22 15 14 25 25 H 1.09001 * 109.46984 * 93.76556 * 1 2 3 26 26 H 1.09000 * 109.47085 * 213.76427 * 1 2 3 27 27 H 1.08994 * 109.46757 * 333.76727 * 1 2 3 28 28 H 0.97000 * 120.00426 * 180.02562 * 6 5 3 29 29 H 1.08005 * 127.27945 * 0.02562 * 14 13 11 30 30 H 1.07998 * 120.50134 * 359.97438 * 17 16 15 31 31 H 1.08002 * 119.54916 * 180.22810 * 18 17 16 32 32 H 1.07998 * 119.54821 * 180.02562 * 20 19 18 33 33 H 1.07996 * 120.49795 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1856 0.0000 4 1 3.1708 1.2195 0.3500 5 6 1.5303 2.3459 -0.4504 6 7 0.4285 2.2687 -1.1618 7 14 2.2646 4.0147 -0.0442 8 1 3.1276 4.4623 -1.1668 9 1 1.1723 4.9990 0.1634 10 1 3.0779 3.9095 1.1939 11 6 2.1389 -1.1672 -0.0055 12 8 3.3507 -1.1702 0.0957 13 6 1.4057 -2.4423 -0.1345 14 6 1.9588 -3.7381 -0.0434 15 6 0.9092 -4.5954 -0.2219 16 6 0.9664 -6.0738 -0.2121 17 6 2.1766 -6.7452 -0.0053 18 6 2.1837 -8.1244 0.0001 19 7 1.0725 -8.8084 -0.1954 20 6 -0.0883 -8.2149 -0.3985 21 6 -0.1872 -6.8394 -0.4152 22 7 -0.2001 -3.8258 -0.4172 23 1 -1.0941 -4.1677 -0.5741 24 7 0.1139 -2.5814 -0.3621 25 1 -0.3633 -0.0675 -1.0255 26 1 -0.3633 -0.8543 0.5712 27 1 -0.3632 0.9218 0.4542 28 1 -0.0035 3.0782 -1.4764 29 1 2.9923 -3.9973 0.1332 30 1 3.0909 -6.1917 0.1504 31 1 3.1122 -8.6516 0.1626 32 1 -0.9731 -8.8145 -0.5537 33 1 -1.1407 -6.3604 -0.5816 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189323422.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:27 Heat of formation + Delta-G solvation = 69.973885 kcal Electronic energy + Delta-G solvation = -19610.837676 eV Core-core repulsion = 16445.054905 eV Total energy + Delta-G solvation = -3165.782771 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.63077 -40.87977 -40.04096 -36.73544 -34.75184 -33.77185 -32.95621 -32.04350 -30.65338 -28.26695 -26.93335 -25.04287 -24.77093 -23.86024 -22.11584 -20.56041 -19.48411 -18.92795 -18.04012 -17.11560 -16.92495 -16.69835 -16.66950 -16.26249 -15.91532 -15.54100 -14.86038 -14.79447 -14.56436 -14.50425 -14.04416 -13.74474 -13.41006 -13.16569 -12.69707 -12.56878 -12.44018 -12.10920 -11.74490 -11.60401 -11.03209 -10.70512 -10.51876 -10.38318 -10.14518 -9.74654 -9.59454 -8.40582 -6.00971 -0.32030 0.18140 0.68036 1.36292 1.42115 1.46331 1.56906 1.82089 2.26423 2.46856 2.88851 2.90568 3.11757 3.35719 3.48471 3.59055 3.78436 4.00030 4.15754 4.26003 4.43875 4.58075 4.63535 4.79212 4.87847 4.93551 5.02180 5.23395 5.25432 5.35373 5.42157 5.69096 5.96434 6.10433 6.42193 6.83282 6.99839 7.09137 7.36601 7.94550 8.62783 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.052946 B = 0.003707 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.709761 B = 7551.744036 C = 8021.355823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.135 3.865 2 N -0.437 5.437 3 C -0.353 4.353 4 H 0.080 0.920 5 C 0.000 4.000 6 N -0.887 5.887 7 Si 0.997 3.003 8 H -0.273 1.273 9 H -0.264 1.264 10 H -0.268 1.268 11 C 0.500 3.500 12 O -0.626 6.626 13 C -0.011 4.011 14 C -0.170 4.170 15 C 0.056 3.944 16 C 0.018 3.982 17 C -0.158 4.158 18 C 0.103 3.897 19 N -0.509 5.509 20 C 0.103 3.897 21 C -0.167 4.167 22 N -0.363 5.363 23 H 0.460 0.540 24 N -0.254 5.254 25 H 0.042 0.958 26 H 0.067 0.933 27 H 0.054 0.946 28 H 0.277 0.723 29 H 0.167 0.833 30 H 0.149 0.851 31 H 0.184 0.816 32 H 0.188 0.812 33 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.017 -17.771 1.420 18.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.009 4.009 2 N -0.154 5.154 3 C -0.481 4.481 4 H 0.098 0.902 5 C -0.203 4.203 6 N -0.524 5.524 7 Si 0.819 3.181 8 H -0.198 1.198 9 H -0.189 1.189 10 H -0.192 1.192 11 C 0.288 3.712 12 O -0.513 6.513 13 C -0.169 4.169 14 C -0.198 4.198 15 C -0.069 4.069 16 C 0.008 3.992 17 C -0.179 4.179 18 C -0.053 4.053 19 N -0.218 5.218 20 C -0.053 4.053 21 C -0.188 4.188 22 N -0.081 5.081 23 H 0.309 0.691 24 N -0.091 5.091 25 H 0.060 0.940 26 H 0.085 0.915 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.184 0.816 30 H 0.167 0.833 31 H 0.201 0.799 32 H 0.205 0.795 33 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -6.536 -17.855 1.215 19.052 hybrid contribution 0.568 1.452 -0.021 1.559 sum -5.968 -16.403 1.194 17.496 Atomic orbital electron populations 1.21477 0.78747 0.99962 1.00689 1.43731 1.07169 1.04477 1.59977 1.19765 0.99503 0.85268 1.43539 0.90205 1.26240 0.96830 1.03261 0.93960 1.70106 1.19948 1.30983 1.31363 0.84893 0.78184 0.76178 0.78886 1.19816 1.18864 1.19203 1.17376 0.86252 0.82843 0.84692 1.90545 1.14778 1.87150 1.58827 1.21887 0.90526 0.95309 1.09132 1.21825 1.00736 0.89644 1.07614 1.19769 0.87227 0.91711 1.08238 1.18323 0.95588 0.87315 0.97994 1.22396 0.98335 0.96381 1.00814 1.23097 0.97559 0.90629 0.93975 1.67724 0.99800 1.42172 1.12153 1.23154 0.96384 0.92002 0.93796 1.22388 0.98752 0.95742 1.01878 1.43688 1.11079 1.02185 1.51172 0.69071 1.73850 1.15854 1.00340 1.19091 0.93956 0.91479 0.92704 0.91282 0.81576 0.83292 0.79910 0.79520 0.82299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 6.59 7.64 127.77 0.98 7.57 16 2 N -0.44 -24.56 3.01 -662.40 -1.99 -26.55 16 3 C -0.35 -20.88 9.29 84.09 0.78 -20.10 16 4 H 0.08 4.96 7.39 -2.91 -0.02 4.94 16 5 C 0.00 0.02 4.97 84.95 0.42 0.44 16 6 N -0.89 -48.14 10.89 21.68 0.24 -47.90 16 7 Si 1.00 42.58 29.58 68.60 2.03 44.61 16 8 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 9 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 10 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 11 C 0.50 27.36 7.62 86.73 0.66 28.02 16 12 O -0.63 -37.88 16.60 -4.04 -0.07 -37.94 16 13 C -0.01 -0.46 6.73 42.34 0.29 -0.17 16 14 C -0.17 -5.93 10.20 22.63 0.23 -5.70 16 15 C 0.06 1.49 7.01 40.65 0.28 1.77 16 16 C 0.02 0.36 5.91 -19.88 -0.12 0.24 16 17 C -0.16 -2.96 9.66 22.61 0.22 -2.74 16 18 C 0.10 1.72 11.17 84.60 0.94 2.67 16 19 N -0.51 -9.37 10.35 -196.18 -2.03 -11.40 16 20 C 0.10 1.48 11.17 84.60 0.94 2.43 16 21 C -0.17 -2.45 9.80 22.61 0.22 -2.23 16 22 N -0.36 -9.40 6.82 -48.52 -0.33 -9.73 16 23 H 0.46 7.38 8.20 -220.00 -1.80 5.58 16 24 N -0.25 -9.33 8.94 -48.38 -0.43 -9.76 16 25 H 0.04 2.14 7.85 -2.39 -0.02 2.12 16 26 H 0.07 2.92 5.85 -2.39 -0.01 2.90 16 27 H 0.05 2.76 6.75 -2.39 -0.02 2.75 16 28 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 29 H 0.17 5.44 7.48 -2.91 -0.02 5.42 16 30 H 0.15 2.56 7.24 -2.91 -0.02 2.54 16 31 H 0.18 2.02 8.06 -2.91 -0.02 1.99 16 32 H 0.19 1.45 8.06 -2.91 -0.02 1.42 16 33 H 0.16 1.32 7.33 -2.91 -0.02 1.30 16 Total: -1.00 -76.22 291.17 2.63 -73.59 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -0.63 Total: 12.89 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: 5.85 Total: 12.19 kcal Atomic # 7 Polarization: -100.79 SS G_CDS: -4.55 Total: -105.34 kcal Atomic # 8 Polarization: -37.88 SS G_CDS: -0.07 Total: -37.94 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -76.22 2.63 -73.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189323422.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.568 kcal (2) G-P(sol) polarization free energy of solvation -76.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds