Wall clock time and date at job start Mon Mar 30 2020 01:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36911 * 119.99831 * 2 1 4 4 H 1.08004 * 119.99433 * 214.93129 * 3 2 1 5 5 C 1.39020 * 120.00221 * 34.92806 * 3 2 1 6 6 N 1.31375 * 119.99911 * 5.20217 * 5 3 2 7 7 Si 1.86800 * 119.99676 * 185.20418 * 5 3 2 8 8 H 1.48502 * 109.47448 * 59.99889 * 7 5 3 9 9 H 1.48500 * 109.46808 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47185 * 299.99769 * 7 5 3 11 11 C 1.34773 * 119.99764 * 179.97438 * 2 1 3 12 12 O 1.21606 * 120.00445 * 5.45812 * 11 2 1 13 13 C 1.47644 * 119.99875 * 185.45467 * 11 2 1 14 14 C 1.41183 * 126.32872 * 175.12687 * 13 11 2 15 15 C 1.36696 * 105.45148 * 179.74618 * 14 13 11 16 16 C 1.47925 * 126.59865 * 180.24710 * 15 14 13 17 17 C 1.39509 * 119.74549 * 179.97438 * 16 15 14 18 18 C 1.38352 * 119.05479 * 179.76764 * 17 16 15 19 19 C 1.38828 * 118.52490 * 0.50362 * 18 17 16 20 20 C 1.38255 * 119.39681 * 359.73884 * 19 18 17 21 21 N 1.31746 * 120.91072 * 0.02562 * 20 19 18 22 22 N 1.36441 * 106.81102 * 0.40888 * 15 14 13 23 23 H 0.96997 * 125.01802 * 179.84090 * 22 15 14 24 24 N 1.28453 * 109.96843 * 359.57229 * 22 15 14 25 25 H 1.08996 * 109.47132 * 265.00416 * 1 2 3 26 26 H 1.09003 * 109.46743 * 25.00893 * 1 2 3 27 27 H 1.09001 * 109.47009 * 145.00526 * 1 2 3 28 28 H 0.97003 * 119.99855 * 180.02562 * 6 5 3 29 29 H 1.07999 * 127.27495 * 0.02926 * 14 13 11 30 30 H 1.08001 * 120.47190 * 0.02562 * 17 16 15 31 31 H 1.07994 * 120.73367 * 180.24324 * 18 17 16 32 32 H 1.07997 * 120.29862 * 179.72410 * 19 18 17 33 33 H 1.07995 * 119.53944 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1496 1.1857 0.0000 4 1 3.0837 1.2699 -0.5356 5 6 1.6423 2.2812 0.6893 6 7 0.5609 2.1518 1.4240 7 14 2.4984 3.9373 0.5708 8 1 2.5200 4.3832 -0.8455 9 1 1.7652 4.9334 1.3927 10 1 3.8908 3.8117 1.0716 11 6 2.1389 -1.1672 0.0005 12 8 1.5350 -2.2180 -0.0992 13 6 3.6103 -1.1701 0.1221 14 6 4.4381 -2.3083 0.2338 15 6 5.7139 -1.8242 0.3147 16 6 6.9535 -2.6217 0.4399 17 6 8.1879 -1.9756 0.5112 18 6 9.3378 -2.7353 0.6330 19 6 9.2182 -4.1179 0.6690 20 6 7.9635 -4.6929 0.5884 21 7 6.8831 -3.9471 0.4776 22 7 5.6239 -0.4638 0.2616 23 1 6.3774 0.1458 0.3006 24 7 4.3945 -0.1097 0.1466 25 1 -0.3633 -0.0895 1.0237 26 1 -0.3633 0.9314 -0.4345 27 1 -0.3633 -0.8419 -0.5894 28 1 0.2067 2.9163 1.9046 29 1 4.1291 -3.3430 0.2472 30 1 8.2448 -0.8977 0.4761 31 1 10.3072 -2.2632 0.6944 32 1 10.0974 -4.7387 0.7589 33 1 7.8679 -5.7683 0.6157 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189469781.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:24 Heat of formation + Delta-G solvation = 92.661312 kcal Electronic energy + Delta-G solvation = -19817.831732 eV Core-core repulsion = 16653.032762 eV Total energy + Delta-G solvation = -3164.798970 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.95672 -39.98741 -38.01076 -34.65649 -32.91117 -32.46652 -31.39704 -31.07931 -29.09349 -26.42263 -24.82299 -23.86694 -23.67069 -21.92494 -20.65063 -18.94590 -18.44829 -16.75675 -16.46279 -16.19115 -15.90865 -15.19290 -14.95372 -14.33811 -14.16358 -13.96304 -13.51408 -13.48307 -13.13663 -12.99658 -12.48495 -11.97361 -11.60869 -11.23183 -11.18060 -10.91157 -10.61889 -10.36754 -10.19716 -9.82561 -9.74260 -9.58977 -8.99164 -8.66096 -8.61737 -8.10991 -7.50590 -6.30180 -3.92877 0.66253 1.08248 2.43287 2.77179 3.15104 3.22262 3.23099 3.25538 3.82922 4.10598 4.18399 4.44359 4.54953 4.63569 4.85601 4.86478 4.90392 5.21119 5.31605 5.39984 5.46883 5.73683 5.93805 6.08760 6.26050 6.47851 6.49028 6.81002 7.01490 7.06621 7.36558 7.38733 7.62866 7.84968 7.93955 8.54222 8.55672 9.16095 9.57532 9.97560 10.74266 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.025708 B = 0.004901 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.893895 B = 5711.846245 C = 6691.798097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.423 5.423 3 C -0.316 4.316 4 H 0.114 0.886 5 C 0.039 3.961 6 N -0.872 5.872 7 Si 0.925 3.075 8 H -0.273 1.273 9 H -0.286 1.286 10 H -0.273 1.273 11 C 0.528 3.472 12 O -0.604 6.604 13 C 0.020 3.980 14 C -0.122 4.122 15 C 0.010 3.990 16 C 0.218 3.782 17 C -0.177 4.177 18 C -0.066 4.066 19 C -0.186 4.186 20 C 0.113 3.887 21 N -0.470 5.470 22 N -0.396 5.396 23 H 0.436 0.564 24 N -0.205 5.205 25 H 0.053 0.947 26 H 0.065 0.935 27 H 0.036 0.964 28 H 0.269 0.731 29 H 0.163 0.837 30 H 0.130 0.870 31 H 0.136 0.864 32 H 0.135 0.865 33 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.910 -5.504 -0.946 17.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.140 5.140 3 C -0.446 4.446 4 H 0.131 0.869 5 C -0.167 4.167 6 N -0.509 5.509 7 Si 0.752 3.248 8 H -0.199 1.199 9 H -0.211 1.211 10 H -0.198 1.198 11 C 0.315 3.685 12 O -0.490 6.490 13 C -0.139 4.139 14 C -0.152 4.152 15 C -0.113 4.113 16 C 0.081 3.919 17 C -0.198 4.198 18 C -0.092 4.092 19 C -0.207 4.207 20 C -0.045 4.045 21 N -0.179 5.179 22 N -0.112 5.112 23 H 0.279 0.721 24 N -0.040 5.040 25 H 0.072 0.928 26 H 0.083 0.917 27 H 0.055 0.945 28 H 0.079 0.921 29 H 0.180 0.820 30 H 0.148 0.852 31 H 0.153 0.847 32 H 0.153 0.847 33 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 15.535 -5.130 -0.973 16.389 hybrid contribution 1.794 0.943 0.311 2.050 sum 17.329 -4.187 -0.663 17.840 Atomic orbital electron populations 1.21318 0.80467 0.99540 1.00880 1.43424 1.05666 1.04712 1.60182 1.20043 1.07214 0.86879 1.30493 0.86879 1.25521 0.96287 1.00349 0.94516 1.69944 1.21403 1.31559 1.28025 0.86033 0.79376 0.81100 0.78297 1.19867 1.21098 1.19781 1.17020 0.83718 0.84117 0.83608 1.90625 1.68379 1.31680 1.58323 1.22134 0.95577 0.88802 1.07391 1.21785 0.89409 1.00256 1.03741 1.19273 0.93594 0.84482 1.13945 1.18712 0.89760 0.89326 0.94137 1.21955 0.92851 1.01047 1.03913 1.21459 0.98555 0.93967 0.95229 1.22174 0.99379 0.95664 1.03444 1.22780 0.87468 1.00206 0.94088 1.67621 1.32953 1.05259 1.12108 1.43945 1.07707 1.04551 1.54988 0.72062 1.74360 0.88260 1.25303 1.16106 0.92840 0.91657 0.94504 0.92091 0.81974 0.85216 0.84663 0.84713 0.82294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 3.08 8.71 59.85 0.52 3.60 16 2 N -0.42 -11.49 2.97 -123.34 -0.37 -11.86 16 3 C -0.32 -8.43 8.11 -14.99 -0.12 -8.55 16 4 H 0.11 2.93 5.73 -52.48 -0.30 2.63 16 5 C 0.04 1.01 5.18 -17.46 -0.09 0.92 16 6 N -0.87 -23.61 11.15 55.50 0.62 -22.99 16 7 Si 0.93 20.14 29.56 -169.99 -5.02 15.12 16 8 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 9 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 10 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 11 C 0.53 14.18 7.63 -12.42 -0.09 14.09 16 12 O -0.60 -17.14 16.55 5.27 0.09 -17.06 16 13 C 0.02 0.48 6.85 -82.88 -0.57 -0.09 16 14 C -0.12 -2.51 10.52 -39.02 -0.41 -2.92 16 15 C 0.01 0.18 7.00 -82.41 -0.58 -0.40 16 16 C 0.22 3.12 6.75 -83.01 -0.56 2.56 16 17 C -0.18 -1.89 9.75 -39.07 -0.38 -2.28 16 18 C -0.07 -0.57 10.16 -39.32 -0.40 -0.97 16 19 C -0.19 -1.55 10.11 -39.36 -0.40 -1.95 16 20 C 0.11 1.18 11.17 -17.58 -0.20 0.98 16 21 N -0.47 -6.74 10.08 -9.84 -0.10 -6.84 16 22 N -0.40 -6.60 6.80 33.31 0.23 -6.38 16 23 H 0.44 5.31 8.06 -190.45 -1.53 3.78 16 24 N -0.21 -4.42 8.92 33.36 0.30 -4.12 16 25 H 0.05 1.41 7.73 -51.93 -0.40 1.00 16 26 H 0.06 1.64 7.29 -51.93 -0.38 1.26 16 27 H 0.04 0.89 7.50 -51.93 -0.39 0.50 16 28 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 29 H 0.16 3.26 8.06 -52.49 -0.42 2.84 16 30 H 0.13 1.08 7.17 -52.49 -0.38 0.70 16 31 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 32 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 33 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 293.30 15.07 4.42 4.42 Total: -1.00 -33.37 293.30 -7.32 -40.69 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -4.21 Total: 4.00 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: -3.28 Total: 5.01 kcal Atomic # 7 Polarization: -52.86 SS G_CDS: 0.68 Total: -52.18 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: 0.09 Total: -17.06 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -33.37 -7.32 -40.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189469781.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.355 kcal (2) G-P(sol) polarization free energy of solvation -33.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds