Wall clock time and date at job start Mon Mar 30 2020 01:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36911 * 119.99831 * 2 1 4 4 H 1.08004 * 119.99433 * 214.93129 * 3 2 1 5 5 C 1.39020 * 120.00221 * 34.92806 * 3 2 1 6 6 N 1.31375 * 119.99911 * 5.20217 * 5 3 2 7 7 Si 1.86800 * 119.99676 * 185.20418 * 5 3 2 8 8 H 1.48502 * 109.47448 * 59.99889 * 7 5 3 9 9 H 1.48500 * 109.46808 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47185 * 299.99769 * 7 5 3 11 11 C 1.34773 * 119.99764 * 179.97438 * 2 1 3 12 12 O 1.21606 * 120.00445 * 5.45812 * 11 2 1 13 13 C 1.47644 * 119.99875 * 185.45467 * 11 2 1 14 14 C 1.41183 * 126.32872 * 175.12687 * 13 11 2 15 15 C 1.36696 * 105.45148 * 179.74618 * 14 13 11 16 16 C 1.47925 * 126.59865 * 180.24710 * 15 14 13 17 17 C 1.39509 * 119.74549 * 179.97438 * 16 15 14 18 18 C 1.38352 * 119.05479 * 179.76764 * 17 16 15 19 19 C 1.38828 * 118.52490 * 0.50362 * 18 17 16 20 20 C 1.38255 * 119.39681 * 359.73884 * 19 18 17 21 21 N 1.31746 * 120.91072 * 0.02562 * 20 19 18 22 22 N 1.36441 * 106.81102 * 0.40888 * 15 14 13 23 23 H 0.96997 * 125.01802 * 179.84090 * 22 15 14 24 24 N 1.28453 * 109.96843 * 359.57229 * 22 15 14 25 25 H 1.08996 * 109.47132 * 265.00416 * 1 2 3 26 26 H 1.09003 * 109.46743 * 25.00893 * 1 2 3 27 27 H 1.09001 * 109.47009 * 145.00526 * 1 2 3 28 28 H 0.97003 * 119.99855 * 180.02562 * 6 5 3 29 29 H 1.07999 * 127.27495 * 0.02926 * 14 13 11 30 30 H 1.08001 * 120.47190 * 0.02562 * 17 16 15 31 31 H 1.07994 * 120.73367 * 180.24324 * 18 17 16 32 32 H 1.07997 * 120.29862 * 179.72410 * 19 18 17 33 33 H 1.07995 * 119.53944 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1496 1.1857 0.0000 4 1 3.0837 1.2699 -0.5356 5 6 1.6423 2.2812 0.6893 6 7 0.5609 2.1518 1.4240 7 14 2.4984 3.9373 0.5708 8 1 2.5200 4.3832 -0.8455 9 1 1.7652 4.9334 1.3927 10 1 3.8908 3.8117 1.0716 11 6 2.1389 -1.1672 0.0005 12 8 1.5350 -2.2180 -0.0992 13 6 3.6103 -1.1701 0.1221 14 6 4.4381 -2.3083 0.2338 15 6 5.7139 -1.8242 0.3147 16 6 6.9535 -2.6217 0.4399 17 6 8.1879 -1.9756 0.5112 18 6 9.3378 -2.7353 0.6330 19 6 9.2182 -4.1179 0.6690 20 6 7.9635 -4.6929 0.5884 21 7 6.8831 -3.9471 0.4776 22 7 5.6239 -0.4638 0.2616 23 1 6.3774 0.1458 0.3006 24 7 4.3945 -0.1097 0.1466 25 1 -0.3633 -0.0895 1.0237 26 1 -0.3633 0.9314 -0.4345 27 1 -0.3633 -0.8419 -0.5894 28 1 0.2067 2.9163 1.9046 29 1 4.1291 -3.3430 0.2472 30 1 8.2448 -0.8977 0.4761 31 1 10.3072 -2.2632 0.6944 32 1 10.0974 -4.7387 0.7589 33 1 7.8679 -5.7683 0.6157 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189469781.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:24 Heat of formation + Delta-G solvation = 69.266939 kcal Electronic energy + Delta-G solvation = -19818.846188 eV Core-core repulsion = 16653.032762 eV Total energy + Delta-G solvation = -3165.813426 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.47152 -40.86801 -40.04296 -36.72568 -33.88677 -33.56705 -33.33190 -32.58980 -30.34674 -28.39715 -26.81311 -24.92296 -24.61964 -23.56910 -22.02740 -20.86542 -19.73490 -18.52139 -17.92845 -17.13576 -16.95804 -16.73669 -16.34655 -16.18505 -15.87248 -15.61622 -14.79784 -14.70828 -14.64711 -14.21007 -13.81196 -13.65045 -13.16471 -13.13831 -12.77615 -12.72696 -12.52643 -12.10294 -11.50746 -11.07777 -10.99018 -10.78260 -10.67846 -10.43599 -10.28462 -9.58230 -9.33567 -8.28432 -5.99658 -0.27808 0.34316 0.78995 1.35866 1.46354 1.52612 1.58070 1.85541 2.32006 2.57940 2.82729 2.94681 3.20699 3.28606 3.61595 3.79594 3.97757 4.12054 4.19174 4.42664 4.46832 4.70595 4.74067 4.77747 4.90276 4.93807 5.17364 5.23881 5.24595 5.36662 5.59171 5.73460 5.89467 6.11440 6.53269 6.93340 7.00869 7.16445 7.53923 7.92697 8.77158 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.025708 B = 0.004901 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.893895 B = 5711.846245 C = 6691.798097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.131 3.869 2 N -0.438 5.438 3 C -0.335 4.335 4 H 0.119 0.881 5 C -0.005 4.005 6 N -0.904 5.904 7 Si 0.995 3.005 8 H -0.264 1.264 9 H -0.283 1.283 10 H -0.263 1.263 11 C 0.514 3.486 12 O -0.634 6.634 13 C -0.011 4.011 14 C -0.158 4.158 15 C 0.049 3.951 16 C 0.174 3.826 17 C -0.168 4.168 18 C -0.065 4.065 19 C -0.162 4.162 20 C 0.094 3.906 21 N -0.508 5.508 22 N -0.369 5.369 23 H 0.458 0.542 24 N -0.225 5.225 25 H 0.038 0.962 26 H 0.064 0.936 27 H 0.041 0.959 28 H 0.272 0.728 29 H 0.153 0.847 30 H 0.154 0.846 31 H 0.176 0.824 32 H 0.175 0.825 33 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.458 -4.822 -0.839 22.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.012 4.012 2 N -0.154 5.154 3 C -0.464 4.464 4 H 0.136 0.864 5 C -0.207 4.207 6 N -0.542 5.542 7 Si 0.818 3.182 8 H -0.188 1.188 9 H -0.208 1.208 10 H -0.187 1.187 11 C 0.304 3.696 12 O -0.522 6.522 13 C -0.169 4.169 14 C -0.187 4.187 15 C -0.076 4.076 16 C 0.037 3.963 17 C -0.188 4.188 18 C -0.090 4.090 19 C -0.182 4.182 20 C -0.064 4.064 21 N -0.218 5.218 22 N -0.087 5.087 23 H 0.306 0.694 24 N -0.061 5.061 25 H 0.056 0.944 26 H 0.083 0.917 27 H 0.060 0.940 28 H 0.081 0.919 29 H 0.170 0.830 30 H 0.171 0.829 31 H 0.194 0.806 32 H 0.193 0.807 33 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 20.091 -4.427 -0.873 20.592 hybrid contribution 0.636 0.551 0.301 0.894 sum 20.727 -3.876 -0.572 21.094 Atomic orbital electron populations 1.21173 0.80484 0.99599 0.99913 1.43685 1.06084 1.05267 1.60360 1.20332 1.07740 0.86935 1.31364 0.86411 1.26434 0.96771 1.03812 0.93665 1.70068 1.22704 1.32699 1.28718 0.84974 0.78467 0.76115 0.78683 1.18829 1.20842 1.18726 1.17560 0.85456 0.83657 0.82965 1.90565 1.69599 1.32525 1.59541 1.21738 0.94284 0.90625 1.10242 1.21697 0.90672 0.99329 1.07015 1.19536 0.93904 0.84394 1.09807 1.18574 0.89549 0.89580 0.98568 1.22249 0.91995 1.02510 1.02083 1.21985 0.99383 0.94031 0.93613 1.22676 0.99661 0.96273 0.99572 1.23297 0.87644 1.01178 0.94260 1.67470 1.35497 1.05835 1.13007 1.43860 1.07100 1.05088 1.52699 0.69400 1.74162 0.89706 1.25024 1.17202 0.94379 0.91706 0.93995 0.91900 0.82970 0.82860 0.80629 0.80743 0.80121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 7.03 8.71 127.77 1.11 8.14 16 2 N -0.44 -24.78 2.97 -662.39 -1.97 -26.75 16 3 C -0.33 -18.20 8.11 84.09 0.68 -17.52 16 4 H 0.12 6.18 5.73 -2.91 -0.02 6.16 16 5 C 0.00 -0.24 5.18 84.95 0.44 0.20 16 6 N -0.90 -49.88 11.15 21.68 0.24 -49.64 16 7 Si 0.99 40.83 29.56 68.60 2.03 42.86 16 8 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 9 H -0.28 -11.41 7.11 99.48 0.71 -10.71 16 10 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 11 C 0.51 29.13 7.63 86.73 0.66 29.79 16 12 O -0.63 -38.13 16.55 -4.05 -0.07 -38.20 16 13 C -0.01 -0.53 6.85 42.34 0.29 -0.24 16 14 C -0.16 -6.76 10.52 22.63 0.24 -6.52 16 15 C 0.05 1.66 7.00 40.63 0.28 1.95 16 16 C 0.17 4.70 6.75 41.87 0.28 4.98 16 17 C -0.17 -2.94 9.75 22.60 0.22 -2.72 16 18 C -0.06 -0.75 10.16 22.44 0.23 -0.53 16 19 C -0.16 -1.88 10.11 22.42 0.23 -1.66 16 20 C 0.09 1.71 11.17 84.71 0.95 2.66 16 21 N -0.51 -14.04 10.08 -185.04 -1.86 -15.90 16 22 N -0.37 -11.89 6.80 -48.53 -0.33 -12.22 16 23 H 0.46 9.98 8.06 -220.00 -1.77 8.21 16 24 N -0.22 -9.74 8.92 -48.38 -0.43 -10.17 16 25 H 0.04 2.11 7.73 -2.39 -0.02 2.09 16 26 H 0.06 3.39 7.29 -2.39 -0.02 3.37 16 27 H 0.04 2.13 7.50 -2.39 -0.02 2.11 16 28 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 29 H 0.15 6.62 8.06 -2.91 -0.02 6.59 16 30 H 0.15 1.83 7.17 -2.91 -0.02 1.81 16 31 H 0.18 0.69 8.06 -2.91 -0.02 0.67 16 32 H 0.18 0.67 8.06 -2.91 -0.02 0.65 16 33 H 0.18 2.23 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -76.87 293.30 2.61 -74.26 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -0.61 Total: 17.25 kcal Atomic # 6 Polarization: 12.91 SS G_CDS: 5.61 Total: 18.52 kcal Atomic # 7 Polarization: -110.33 SS G_CDS: -4.35 Total: -114.68 kcal Atomic # 8 Polarization: -38.13 SS G_CDS: -0.07 Total: -38.20 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.86 kcal Total: -76.87 2.61 -74.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189469781.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.522 kcal (2) G-P(sol) polarization free energy of solvation -76.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds