Wall clock time and date at job start Mon Mar 30 2020 01:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36872 * 119.99711 * 2 1 4 4 H 1.07999 * 119.99968 * 199.34361 * 3 2 1 5 5 C 1.39044 * 120.00001 * 19.34308 * 3 2 1 6 6 N 1.31368 * 120.00134 * 15.99903 * 5 3 2 7 7 Si 1.86803 * 120.00045 * 195.99450 * 5 3 2 8 8 H 1.48505 * 109.47146 * 94.97906 * 7 5 3 9 9 H 1.48498 * 109.47214 * 214.97720 * 7 5 3 10 10 H 1.48501 * 109.47113 * 334.98077 * 7 5 3 11 11 C 1.34774 * 120.00206 * 180.02562 * 2 1 3 12 12 O 1.21616 * 120.00016 * 185.13090 * 11 2 1 13 13 C 1.47517 * 119.99937 * 5.12410 * 11 2 1 14 14 C 1.39678 * 120.19510 * 301.61106 * 13 11 2 15 15 C 1.37859 * 119.91436 * 179.97438 * 14 13 11 16 16 C 1.38518 * 120.30775 * 0.02562 * 15 14 13 17 17 C 1.38129 * 120.39037 * 359.97438 * 16 15 14 18 18 C 1.38698 * 120.08805 * 0.02562 * 17 16 15 19 19 N 1.39802 * 120.15753 * 180.27486 * 18 17 16 20 20 N 1.28594 * 124.60306 * 172.13198 * 19 18 17 21 21 C 1.31379 * 108.72665 * 179.82792 * 20 19 18 22 22 C 1.39817 * 105.87277 * 0.41954 * 21 20 19 23 23 N 1.28597 * 124.60042 * 352.43660 * 19 18 17 24 24 H 1.09000 * 109.46964 * 272.88376 * 1 2 3 25 25 H 1.08997 * 109.47425 * 32.88689 * 1 2 3 26 26 H 1.09003 * 109.47022 * 152.88886 * 1 2 3 27 27 H 0.97002 * 120.00094 * 180.02562 * 6 5 3 28 28 H 1.08000 * 120.04264 * 359.95969 * 14 13 11 29 29 H 1.07999 * 119.84614 * 179.97438 * 15 14 13 30 30 H 1.07995 * 119.80124 * 180.02562 * 16 15 14 31 31 H 1.08008 * 119.95109 * 179.97438 * 17 16 15 32 32 H 1.07997 * 127.06714 * 180.16085 * 21 20 19 33 33 H 1.08009 * 127.05784 * 179.75022 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1493 1.1854 0.0000 4 1 3.1836 1.2118 -0.3098 5 6 1.5129 2.3555 0.3988 6 7 0.3819 2.2941 1.0642 7 14 2.2663 4.0149 -0.0114 8 1 1.6653 4.5349 -1.2659 9 1 1.9999 4.9670 1.0967 10 1 3.7324 3.8621 -0.1911 11 6 2.1389 -1.1672 -0.0005 12 8 3.3514 -1.1693 0.0937 13 6 1.4058 -2.4421 -0.1152 14 6 0.4302 -2.7786 0.8261 15 6 -0.2518 -3.9713 0.7131 16 6 0.0260 -4.8393 -0.3301 17 6 0.9883 -4.5192 -1.2680 18 6 1.6843 -3.3235 -1.1700 19 7 2.6544 -2.9955 -2.1217 20 7 3.2458 -1.8562 -2.1989 21 6 4.0966 -1.8896 -3.1995 22 6 3.9794 -3.1657 -3.7587 23 7 3.0724 -3.7903 -3.0422 24 1 -0.3633 0.0517 1.0264 25 1 -0.3634 0.8629 -0.5580 26 1 -0.3633 -0.9148 -0.4683 27 1 -0.0623 3.1104 1.3422 28 1 0.2106 -2.1054 1.6415 29 1 -1.0056 -4.2306 1.4417 30 1 -0.5135 -5.7713 -0.4110 31 1 1.1994 -5.2014 -2.0783 32 1 4.7492 -1.0934 -3.5259 33 1 4.5231 -3.5576 -4.6057 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190345428.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:07 Heat of formation + Delta-G solvation = 141.739883 kcal Electronic energy + Delta-G solvation = -20879.082340 eV Core-core repulsion = 17716.411577 eV Total energy + Delta-G solvation = -3162.670763 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.37686 -39.50053 -37.53769 -34.65520 -33.51933 -32.24106 -31.76797 -30.58189 -29.31778 -26.29415 -24.97774 -23.79115 -23.39276 -21.80258 -20.90719 -19.40063 -17.82409 -16.90999 -16.45903 -16.19954 -15.34224 -15.24087 -14.93397 -14.24812 -14.20960 -14.00514 -13.68553 -13.41819 -12.78411 -12.48833 -11.95575 -11.61451 -11.43605 -11.29243 -11.13738 -11.07066 -10.87269 -10.33586 -10.25870 -10.12718 -10.11899 -9.89286 -9.00260 -8.77430 -8.36811 -8.07188 -7.65737 -6.32274 -3.79678 0.93656 1.34915 2.51197 2.63014 2.86386 3.17117 3.26221 3.32277 3.72504 4.06575 4.17547 4.43744 4.74528 5.01861 5.07448 5.17975 5.24703 5.35949 5.47041 5.58045 5.64512 5.84958 6.06919 6.24248 6.32365 6.36982 6.45800 6.54091 6.61301 6.81625 6.88022 7.19994 7.29683 7.58971 8.13606 8.52580 8.71359 9.22791 9.44556 10.03929 10.71941 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.019109 B = 0.007442 C = 0.005652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.925940 B = 3761.473412 C = 4953.206814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.432 5.432 3 C -0.293 4.293 4 H 0.102 0.898 5 C 0.027 3.973 6 N -0.879 5.879 7 Si 0.925 3.075 8 H -0.279 1.279 9 H -0.284 1.284 10 H -0.268 1.268 11 C 0.491 3.509 12 O -0.562 6.562 13 C -0.076 4.076 14 C -0.079 4.079 15 C -0.119 4.119 16 C -0.106 4.106 17 C -0.112 4.112 18 C 0.165 3.835 19 N -0.106 5.106 20 N -0.220 5.220 21 C -0.035 4.035 22 C -0.023 4.023 23 N -0.306 5.306 24 H 0.059 0.941 25 H 0.067 0.933 26 H 0.026 0.974 27 H 0.267 0.733 28 H 0.140 0.860 29 H 0.132 0.868 30 H 0.133 0.867 31 H 0.139 0.861 32 H 0.196 0.804 33 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.444 -10.528 -5.273 12.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.150 5.150 3 C -0.421 4.421 4 H 0.120 0.880 5 C -0.176 4.176 6 N -0.519 5.519 7 Si 0.752 3.248 8 H -0.205 1.205 9 H -0.210 1.210 10 H -0.193 1.193 11 C 0.278 3.722 12 O -0.445 6.445 13 C -0.082 4.082 14 C -0.099 4.099 15 C -0.137 4.137 16 C -0.125 4.125 17 C -0.133 4.133 18 C 0.073 3.927 19 N 0.002 4.998 20 N -0.057 5.057 21 C -0.219 4.219 22 C -0.207 4.207 23 N -0.144 5.144 24 H 0.078 0.922 25 H 0.086 0.914 26 H 0.044 0.956 27 H 0.077 0.923 28 H 0.158 0.842 29 H 0.150 0.850 30 H 0.151 0.849 31 H 0.157 0.843 32 H 0.213 0.787 33 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -2.887 -10.635 -4.247 11.810 hybrid contribution 0.917 1.124 -0.878 1.695 sum -1.970 -9.511 -5.125 10.982 Atomic orbital electron populations 1.21575 0.81329 0.98751 1.01702 1.43383 1.05340 1.04436 1.61795 1.19687 0.98130 0.82862 1.41398 0.88048 1.25323 0.96628 0.99950 0.95659 1.70011 1.17924 1.28926 1.35034 0.85917 0.79670 0.81247 0.77961 1.20486 1.20987 1.19257 1.17384 0.87289 0.82364 0.85122 1.90622 1.13190 1.85945 1.54712 1.20258 0.97079 0.97170 0.93740 1.21342 0.93508 0.96896 0.98132 1.21207 1.00050 0.93999 0.98477 1.21016 0.97297 0.99886 0.94269 1.20791 0.96527 0.94958 1.01029 1.17338 0.90518 0.96160 0.88642 1.44768 1.28044 1.06101 1.20912 1.74856 1.07620 1.05694 1.17525 1.25035 1.02225 0.99368 0.95244 1.24829 0.99490 0.93773 1.02615 1.73918 1.14675 1.23768 1.02060 0.92225 0.91440 0.95559 0.92266 0.84197 0.85037 0.84932 0.84286 0.78671 0.78534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.54 7.62 59.85 0.46 3.00 16 2 N -0.43 -11.37 3.02 -123.39 -0.37 -11.74 16 3 C -0.29 -8.27 9.30 -15.00 -0.14 -8.41 16 4 H 0.10 3.02 7.42 -52.49 -0.39 2.63 16 5 C 0.03 0.73 5.03 -17.45 -0.09 0.64 16 6 N -0.88 -23.39 10.68 55.50 0.59 -22.80 16 7 Si 0.93 20.91 29.58 -169.99 -5.03 15.88 16 8 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 9 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 11 C 0.49 12.64 5.51 -12.48 -0.07 12.57 16 12 O -0.56 -16.31 14.74 5.26 0.08 -16.24 16 13 C -0.08 -1.60 4.57 -104.82 -0.48 -2.08 16 14 C -0.08 -1.35 7.92 -39.18 -0.31 -1.66 16 15 C -0.12 -1.54 10.02 -39.62 -0.40 -1.94 16 16 C -0.11 -1.31 10.03 -39.52 -0.40 -1.71 16 17 C -0.11 -1.72 9.58 -39.45 -0.38 -2.10 16 18 C 0.17 3.25 6.72 -83.30 -0.56 2.69 16 19 N -0.11 -2.22 4.11 32.65 0.13 -2.08 16 20 N -0.22 -4.94 7.90 30.70 0.24 -4.70 16 21 C -0.03 -0.61 12.20 -17.16 -0.21 -0.82 16 22 C -0.02 -0.35 12.20 -17.16 -0.21 -0.56 16 23 N -0.31 -5.53 11.22 30.71 0.34 -5.19 16 24 H 0.06 1.37 7.38 -51.93 -0.38 0.99 16 25 H 0.07 1.63 7.02 -51.93 -0.36 1.27 16 26 H 0.03 0.53 6.00 -51.93 -0.31 0.22 16 27 H 0.27 6.71 8.31 -40.82 -0.34 6.38 16 28 H 0.14 2.34 7.52 -52.49 -0.39 1.94 16 29 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 30 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 31 H 0.14 1.91 7.64 -52.48 -0.40 1.51 16 32 H 0.20 2.74 8.06 -52.49 -0.42 2.31 16 33 H 0.20 1.95 8.06 -52.48 -0.42 1.53 16 LS Contribution 286.80 15.07 4.32 4.32 Total: -1.00 -34.42 286.80 -5.54 -39.96 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -3.07 Total: 2.96 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -2.78 Total: -0.37 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: 0.94 Total: -46.51 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: 0.08 Total: -16.24 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.03 Total: 15.88 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -34.42 -5.54 -39.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190345428.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.699 kcal (2) G-P(sol) polarization free energy of solvation -34.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds