Wall clock time and date at job start Mon Mar 30 2020 01:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36872 * 119.99711 * 2 1 4 4 H 1.07999 * 119.99968 * 199.34361 * 3 2 1 5 5 C 1.39044 * 120.00001 * 19.34308 * 3 2 1 6 6 N 1.31368 * 120.00134 * 15.99903 * 5 3 2 7 7 Si 1.86803 * 120.00045 * 195.99450 * 5 3 2 8 8 H 1.48505 * 109.47146 * 94.97906 * 7 5 3 9 9 H 1.48498 * 109.47214 * 214.97720 * 7 5 3 10 10 H 1.48501 * 109.47113 * 334.98077 * 7 5 3 11 11 C 1.34774 * 120.00206 * 180.02562 * 2 1 3 12 12 O 1.21616 * 120.00016 * 185.13090 * 11 2 1 13 13 C 1.47517 * 119.99937 * 5.12410 * 11 2 1 14 14 C 1.39678 * 120.19510 * 301.61106 * 13 11 2 15 15 C 1.37859 * 119.91436 * 179.97438 * 14 13 11 16 16 C 1.38518 * 120.30775 * 0.02562 * 15 14 13 17 17 C 1.38129 * 120.39037 * 359.97438 * 16 15 14 18 18 C 1.38698 * 120.08805 * 0.02562 * 17 16 15 19 19 N 1.39802 * 120.15753 * 180.27486 * 18 17 16 20 20 N 1.28594 * 124.60306 * 172.13198 * 19 18 17 21 21 C 1.31379 * 108.72665 * 179.82792 * 20 19 18 22 22 C 1.39817 * 105.87277 * 0.41954 * 21 20 19 23 23 N 1.28597 * 124.60042 * 352.43660 * 19 18 17 24 24 H 1.09000 * 109.46964 * 272.88376 * 1 2 3 25 25 H 1.08997 * 109.47425 * 32.88689 * 1 2 3 26 26 H 1.09003 * 109.47022 * 152.88886 * 1 2 3 27 27 H 0.97002 * 120.00094 * 180.02562 * 6 5 3 28 28 H 1.08000 * 120.04264 * 359.95969 * 14 13 11 29 29 H 1.07999 * 119.84614 * 179.97438 * 15 14 13 30 30 H 1.07995 * 119.80124 * 180.02562 * 16 15 14 31 31 H 1.08008 * 119.95109 * 179.97438 * 17 16 15 32 32 H 1.07997 * 127.06714 * 180.16085 * 21 20 19 33 33 H 1.08009 * 127.05784 * 179.75022 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1493 1.1854 0.0000 4 1 3.1836 1.2118 -0.3098 5 6 1.5129 2.3555 0.3988 6 7 0.3819 2.2941 1.0642 7 14 2.2663 4.0149 -0.0114 8 1 1.6653 4.5349 -1.2659 9 1 1.9999 4.9670 1.0967 10 1 3.7324 3.8621 -0.1911 11 6 2.1389 -1.1672 -0.0005 12 8 3.3514 -1.1693 0.0937 13 6 1.4058 -2.4421 -0.1152 14 6 0.4302 -2.7786 0.8261 15 6 -0.2518 -3.9713 0.7131 16 6 0.0260 -4.8393 -0.3301 17 6 0.9883 -4.5192 -1.2680 18 6 1.6843 -3.3235 -1.1700 19 7 2.6544 -2.9955 -2.1217 20 7 3.2458 -1.8562 -2.1989 21 6 4.0966 -1.8896 -3.1995 22 6 3.9794 -3.1657 -3.7587 23 7 3.0724 -3.7903 -3.0422 24 1 -0.3633 0.0517 1.0264 25 1 -0.3634 0.8629 -0.5580 26 1 -0.3633 -0.9148 -0.4683 27 1 -0.0623 3.1104 1.3422 28 1 0.2106 -2.1054 1.6415 29 1 -1.0056 -4.2306 1.4417 30 1 -0.5135 -5.7713 -0.4110 31 1 1.1994 -5.2014 -2.0783 32 1 4.7492 -1.0934 -3.5259 33 1 4.5231 -3.5576 -4.6057 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001190345428.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:06 Heat of formation + Delta-G solvation = 117.956007 kcal Electronic energy + Delta-G solvation = -20880.113687 eV Core-core repulsion = 17716.411577 eV Total energy + Delta-G solvation = -3163.702110 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.73660 -41.01850 -39.18973 -36.64156 -34.83585 -33.80584 -33.53610 -32.01993 -30.58841 -28.23693 -26.77561 -25.18472 -24.78313 -23.24377 -22.25490 -21.00146 -19.25263 -18.85776 -18.11269 -17.64689 -16.94358 -16.68780 -16.29972 -15.98164 -15.67345 -15.51571 -15.08244 -14.95254 -14.44669 -13.91720 -13.60754 -13.37414 -13.15016 -12.87616 -12.67892 -12.57414 -12.35274 -12.31470 -12.14671 -11.58210 -11.38884 -11.35684 -10.99699 -10.43498 -9.95277 -9.69269 -9.36956 -8.35337 -5.92646 -0.34967 0.11839 1.21544 1.33948 1.35686 1.38635 1.51759 1.56918 2.07644 2.26126 2.66437 2.99619 3.16065 3.20490 3.82931 3.86036 3.99036 4.10588 4.25583 4.35646 4.37603 4.52845 4.64681 4.87640 4.96381 5.03357 5.11398 5.27781 5.29528 5.35346 5.39216 5.45695 5.67352 5.97534 6.09083 6.49922 7.18853 7.35797 7.46092 8.07363 8.67919 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.019109 B = 0.007442 C = 0.005652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.925940 B = 3761.473412 C = 4953.206814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.129 3.871 2 N -0.450 5.450 3 C -0.332 4.332 4 H 0.069 0.931 5 C -0.004 4.004 6 N -0.894 5.894 7 Si 0.989 3.011 8 H -0.267 1.267 9 H -0.271 1.271 10 H -0.276 1.276 11 C 0.494 3.506 12 O -0.610 6.610 13 C -0.120 4.120 14 C -0.087 4.087 15 C -0.099 4.099 16 C -0.076 4.076 17 C -0.112 4.112 18 C 0.137 3.863 19 N -0.125 5.125 20 N -0.287 5.287 21 C -0.044 4.044 22 C -0.001 4.001 23 N -0.316 5.316 24 H 0.054 0.946 25 H 0.048 0.952 26 H 0.051 0.949 27 H 0.274 0.726 28 H 0.133 0.867 29 H 0.179 0.821 30 H 0.188 0.812 31 H 0.155 0.845 32 H 0.220 0.780 33 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.050 -12.688 -5.996 14.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.014 4.014 2 N -0.168 5.168 3 C -0.460 4.460 4 H 0.087 0.913 5 C -0.206 4.206 6 N -0.533 5.533 7 Si 0.812 3.188 8 H -0.192 1.192 9 H -0.196 1.196 10 H -0.201 1.201 11 C 0.283 3.717 12 O -0.496 6.496 13 C -0.126 4.126 14 C -0.106 4.106 15 C -0.118 4.118 16 C -0.094 4.094 17 C -0.132 4.132 18 C 0.045 3.955 19 N -0.016 5.016 20 N -0.124 5.124 21 C -0.228 4.228 22 C -0.185 4.185 23 N -0.153 5.153 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.151 0.849 29 H 0.197 0.803 30 H 0.205 0.795 31 H 0.173 0.827 32 H 0.236 0.764 33 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -4.542 -12.811 -4.958 14.469 hybrid contribution 1.428 1.632 -0.690 2.276 sum -3.114 -11.179 -5.648 12.906 Atomic orbital electron populations 1.21409 0.79743 0.99076 1.01216 1.43573 1.06383 1.04333 1.62530 1.19541 0.97613 0.84849 1.44025 0.91303 1.26058 0.97087 1.02589 0.94820 1.70064 1.18407 1.30080 1.34722 0.84994 0.78326 0.77064 0.78405 1.19191 1.19589 1.20108 1.18108 0.87039 0.83792 0.82792 1.90545 1.15583 1.87205 1.56258 1.19965 0.99940 0.95760 0.96968 1.21435 0.93263 0.98801 0.97149 1.21691 0.99280 0.91697 0.99092 1.21669 0.95014 1.00947 0.91787 1.21157 0.96458 0.93385 1.02245 1.17834 0.91427 0.97473 0.88736 1.44957 1.28845 1.05936 1.21903 1.74779 1.09904 1.07703 1.20023 1.25647 1.01496 1.01264 0.94351 1.25677 0.98008 0.92216 1.02636 1.73872 1.15513 1.23839 1.02096 0.92706 0.93281 0.93052 0.91616 0.84903 0.80344 0.79523 0.82704 0.76371 0.73239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 6.15 7.62 127.77 0.97 7.13 16 2 N -0.45 -25.11 3.02 -662.56 -2.00 -27.11 16 3 C -0.33 -19.95 9.30 84.10 0.78 -19.17 16 4 H 0.07 4.47 7.42 -2.91 -0.02 4.44 16 5 C 0.00 -0.21 5.03 84.96 0.43 0.21 16 6 N -0.89 -48.52 10.68 21.68 0.23 -48.29 16 7 Si 0.99 43.99 29.58 68.60 2.03 46.01 16 8 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 9 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 11 C 0.49 26.98 5.51 86.69 0.48 27.46 16 12 O -0.61 -38.13 14.74 -4.08 -0.06 -38.19 16 13 C -0.12 -5.19 4.57 -19.99 -0.09 -5.28 16 14 C -0.09 -2.89 7.92 22.53 0.18 -2.71 16 15 C -0.10 -2.17 10.02 22.25 0.22 -1.94 16 16 C -0.08 -1.49 10.03 22.31 0.22 -1.27 16 17 C -0.11 -3.13 9.58 22.35 0.21 -2.91 16 18 C 0.14 5.41 6.72 38.47 0.26 5.67 16 19 N -0.13 -5.31 4.11 -50.60 -0.21 -5.52 16 20 N -0.29 -13.51 7.90 -56.77 -0.45 -13.96 16 21 C -0.04 -1.56 12.20 85.14 1.04 -0.52 16 22 C 0.00 -0.04 12.20 85.14 1.04 1.00 16 23 N -0.32 -11.16 11.22 -56.77 -0.64 -11.80 16 24 H 0.05 2.61 7.38 -2.39 -0.02 2.59 16 25 H 0.05 2.46 7.02 -2.39 -0.02 2.45 16 26 H 0.05 2.14 6.00 -2.39 -0.01 2.12 16 27 H 0.27 13.82 8.31 -92.71 -0.77 13.05 16 28 H 0.13 4.47 7.52 -2.91 -0.02 4.45 16 29 H 0.18 2.28 8.06 -2.91 -0.02 2.26 16 30 H 0.19 1.78 8.06 -2.91 -0.02 1.75 16 31 H 0.16 3.78 7.64 -2.91 -0.02 3.76 16 32 H 0.22 6.23 8.06 -2.91 -0.02 6.21 16 33 H 0.25 4.01 8.06 -2.91 -0.02 3.98 16 Total: -1.00 -83.07 286.80 5.80 -77.27 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: 1.14 Total: 13.94 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: 5.75 Total: 7.65 kcal Atomic # 7 Polarization: -103.62 SS G_CDS: -3.06 Total: -106.68 kcal Atomic # 8 Polarization: -38.13 SS G_CDS: -0.06 Total: -38.19 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -83.07 5.80 -77.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190345428.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.224 kcal (2) G-P(sol) polarization free energy of solvation -83.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds