Wall clock time and date at job start Mon Mar 30 2020 01:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36881 * 120.00226 * 2 1 4 4 H 1.08002 * 120.00293 * 174.01025 * 3 2 1 5 5 C 1.39040 * 119.99960 * 354.01933 * 3 2 1 6 6 N 1.31368 * 119.99697 * 5.08305 * 5 3 2 7 7 Si 1.86803 * 119.99892 * 185.08258 * 5 3 2 8 8 H 1.48502 * 109.46971 * 89.99945 * 7 5 3 9 9 H 1.48500 * 109.47061 * 209.99990 * 7 5 3 10 10 H 1.48501 * 109.46936 * 329.99984 * 7 5 3 11 11 C 1.34779 * 119.99761 * 179.97438 * 2 1 3 12 12 O 1.21624 * 119.99832 * 5.48873 * 11 2 1 13 13 C 1.47486 * 119.99795 * 185.48417 * 11 2 1 14 14 N 1.31839 * 126.99775 * 354.40523 * 13 11 2 15 15 N 1.28241 * 110.62691 * 180.27815 * 14 13 11 16 16 H 0.97004 * 124.19279 * 179.73328 * 15 14 13 17 17 C 1.34673 * 111.61552 * 359.69953 * 15 14 13 18 18 C 1.36725 * 107.28006 * 359.97438 * 17 15 14 19 19 C 1.48221 * 127.76379 * 180.02562 * 18 17 15 20 20 C 1.39418 * 119.73545 * 0.04575 * 19 18 17 21 21 C 1.38343 * 119.06441 * 179.72313 * 20 19 18 22 22 C 1.38824 * 118.52114 * 0.52244 * 21 20 19 23 23 C 1.38209 * 119.38341 * 359.47766 * 22 21 20 24 24 N 1.31799 * 120.89434 * 0.25389 * 23 22 21 25 25 H 1.09003 * 109.47272 * 184.73430 * 1 2 3 26 26 H 1.09004 * 109.47374 * 304.74158 * 1 2 3 27 27 H 1.09006 * 109.46826 * 64.73923 * 1 2 3 28 28 H 0.97002 * 119.99993 * 179.97438 * 6 5 3 29 29 H 1.07997 * 126.36057 * 180.02562 * 17 15 14 30 30 H 1.08006 * 120.46730 * 0.02562 * 20 19 18 31 31 H 1.07998 * 120.74096 * 180.30024 * 21 20 19 32 32 H 1.07999 * 120.31328 * 179.75618 * 22 21 20 33 33 H 1.07990 * 119.55304 * 180.27900 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1495 1.1854 0.0000 4 1 3.2251 1.1880 0.0976 5 6 1.4600 2.3863 -0.1255 6 7 0.1464 2.3906 -0.1435 7 14 2.4015 3.9933 -0.2683 8 1 2.6697 4.2843 -1.6997 9 1 1.5945 5.0936 0.3177 10 1 3.6887 3.8796 0.4633 11 6 2.1389 -1.1673 0.0005 12 8 1.5348 -2.2181 -0.0998 13 6 3.6087 -1.1701 0.1226 14 7 4.4057 -0.1201 0.1357 15 7 5.6302 -0.4837 0.2498 16 1 6.3810 0.1300 0.2762 17 6 5.7445 -1.8233 0.3291 18 6 4.4821 -2.3435 0.2591 19 6 4.0846 -3.7707 0.3041 20 6 5.0617 -4.7569 0.4329 21 6 4.6748 -6.0843 0.4793 22 6 3.3227 -6.3843 0.3843 23 6 2.4072 -5.3566 0.2580 24 7 2.8017 -4.0996 0.2219 25 1 -0.3634 -1.0242 0.0848 26 1 -0.3634 0.5857 0.8445 27 1 -0.3633 0.4386 -0.9295 28 1 -0.3346 3.2284 -0.2307 29 1 6.6628 -2.3826 0.4301 30 1 6.1056 -4.4880 0.5005 31 1 5.4085 -6.8699 0.5835 32 1 2.9888 -7.4110 0.4133 33 1 1.3544 -5.5866 0.1884 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191487453.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:26 Heat of formation + Delta-G solvation = 124.407977 kcal Electronic energy + Delta-G solvation = -20417.650864 eV Core-core repulsion = 17254.228533 eV Total energy + Delta-G solvation = -3163.422331 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.79076 -39.42474 -37.81262 -34.51105 -32.50154 -31.94975 -31.36160 -30.65002 -28.92701 -26.34566 -24.65139 -23.50644 -23.19738 -21.71836 -20.17956 -18.74582 -18.35946 -16.62830 -16.27299 -15.71802 -15.45778 -15.08261 -15.01475 -14.22167 -13.80560 -13.43866 -13.35598 -13.22703 -12.94872 -12.67647 -12.21568 -11.49222 -11.37680 -11.32862 -11.02987 -10.87038 -10.36814 -10.30559 -9.77608 -9.33567 -9.21795 -8.93479 -8.75591 -8.67366 -7.92237 -7.79087 -7.66230 -6.12238 -3.60401 1.18592 1.69908 2.46906 2.82001 3.24242 3.27238 3.31003 3.38786 4.20009 4.40433 4.65860 4.68410 4.75000 5.03669 5.17878 5.27763 5.28266 5.40489 5.42265 5.60595 5.93310 5.99674 6.10039 6.25687 6.47146 6.54191 6.81085 7.07043 7.19344 7.40829 7.42818 7.62791 7.83446 8.00338 8.54167 8.67880 8.81908 9.29433 9.79214 10.20122 10.81560 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.027597 B = 0.005909 C = 0.004884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.371916 B = 4737.168703 C = 5732.206104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.126 3.874 2 N -0.433 5.433 3 C -0.320 4.320 4 H 0.145 0.855 5 C 0.023 3.977 6 N -0.880 5.880 7 Si 0.928 3.072 8 H -0.279 1.279 9 H -0.286 1.286 10 H -0.270 1.270 11 C 0.504 3.496 12 O -0.555 6.555 13 C 0.074 3.926 14 N -0.254 5.254 15 N -0.406 5.406 16 H 0.438 0.562 17 C 0.003 3.997 18 C -0.145 4.145 19 C 0.213 3.787 20 C -0.179 4.179 21 C -0.084 4.084 22 C -0.195 4.195 23 C 0.104 3.896 24 N -0.403 5.403 25 H 0.035 0.965 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.263 0.737 29 H 0.178 0.822 30 H 0.126 0.874 31 H 0.126 0.874 32 H 0.125 0.875 33 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.486 -10.022 1.491 15.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.016 4.016 2 N -0.151 5.151 3 C -0.450 4.450 4 H 0.161 0.839 5 C -0.180 4.180 6 N -0.522 5.522 7 Si 0.755 3.245 8 H -0.206 1.206 9 H -0.211 1.211 10 H -0.195 1.195 11 C 0.290 3.710 12 O -0.436 6.436 13 C -0.090 4.090 14 N -0.085 5.085 15 N -0.115 5.115 16 H 0.281 0.719 17 C -0.143 4.143 18 C -0.157 4.157 19 C 0.075 3.925 20 C -0.200 4.200 21 C -0.109 4.109 22 C -0.216 4.216 23 C -0.055 4.055 24 N -0.111 5.111 25 H 0.054 0.946 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.195 0.805 30 H 0.144 0.856 31 H 0.144 0.856 32 H 0.143 0.857 33 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 10.326 -8.581 1.287 13.487 hybrid contribution 1.565 -0.167 0.076 1.576 sum 11.891 -8.748 1.363 14.825 Atomic orbital electron populations 1.21561 0.79385 0.97514 1.03190 1.43753 1.06273 1.04914 1.60196 1.21190 0.95327 0.82568 1.45953 0.83883 1.25397 0.95616 0.99753 0.97190 1.70247 1.06004 1.26867 1.49058 0.85901 0.79202 0.81008 0.78373 1.20555 1.21133 1.19504 1.16597 0.83566 0.84446 0.86353 1.90794 1.66808 1.29897 1.56126 1.23702 0.95606 0.87007 1.02716 1.73875 0.89129 1.25407 1.20079 1.43403 1.07714 1.05705 1.54671 0.71923 1.22575 0.98818 0.85757 1.07160 1.19573 0.91387 0.91595 1.13176 1.18988 0.89028 0.90624 0.93840 1.21924 1.00036 0.93411 1.04617 1.21312 0.96081 0.96045 0.97507 1.22155 0.94310 1.00671 1.04437 1.22948 1.00182 0.87853 0.94526 1.68591 1.15767 1.18934 1.07762 0.94629 0.91386 0.92163 0.92591 0.80519 0.85646 0.85574 0.85655 0.83210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 3.36 8.85 59.85 0.53 3.89 16 2 N -0.43 -12.02 3.02 -123.39 -0.37 -12.39 16 3 C -0.32 -8.78 9.35 -15.00 -0.14 -8.92 16 4 H 0.14 3.76 4.14 -63.75 -0.26 3.50 16 5 C 0.02 0.61 5.46 -17.45 -0.10 0.52 16 6 N -0.88 -24.07 9.44 55.50 0.52 -23.54 16 7 Si 0.93 20.72 29.56 -169.99 -5.02 15.70 16 8 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 9 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 11 C 0.50 13.59 7.63 -12.49 -0.10 13.49 16 12 O -0.55 -15.44 12.81 5.26 0.07 -15.37 16 13 C 0.07 1.74 7.07 -80.59 -0.57 1.17 16 14 N -0.25 -5.34 8.67 34.53 0.30 -5.04 16 15 N -0.41 -6.12 6.72 30.66 0.21 -5.92 16 16 H 0.44 4.54 8.96 -190.57 -1.71 2.83 16 17 C 0.00 0.04 11.46 -16.85 -0.19 -0.15 16 18 C -0.15 -2.80 6.36 -102.83 -0.65 -3.45 16 19 C 0.21 3.96 6.75 -82.95 -0.56 3.40 16 20 C -0.18 -2.49 9.64 -39.10 -0.38 -2.87 16 21 C -0.08 -1.02 10.16 -39.33 -0.40 -1.42 16 22 C -0.20 -2.54 10.11 -39.38 -0.40 -2.93 16 23 C 0.10 1.73 11.17 -17.58 -0.20 1.53 16 24 N -0.40 -8.41 6.70 -9.79 -0.07 -8.48 16 25 H 0.04 0.91 6.94 -51.93 -0.36 0.55 16 26 H 0.07 1.85 6.96 -51.93 -0.36 1.49 16 27 H 0.06 1.64 7.13 -51.93 -0.37 1.27 16 28 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 29 H 0.18 1.55 7.43 -52.49 -0.39 1.16 16 30 H 0.13 1.31 7.17 -52.48 -0.38 0.93 16 31 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 32 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 33 H 0.15 2.22 8.06 -52.49 -0.42 1.80 16 LS Contribution 283.46 15.07 4.27 4.27 Total: -1.00 -34.73 283.46 -7.48 -42.21 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -4.23 Total: 4.30 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: -3.15 Total: 4.26 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: 0.59 Total: -55.37 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: 0.07 Total: -15.37 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -34.73 -7.48 -42.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191487453.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.619 kcal (2) G-P(sol) polarization free energy of solvation -34.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds