Wall clock time and date at job start Mon Mar 30 2020 01:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36881 * 120.00226 * 2 1 4 4 H 1.08002 * 120.00293 * 174.01025 * 3 2 1 5 5 C 1.39040 * 119.99960 * 354.01933 * 3 2 1 6 6 N 1.31368 * 119.99697 * 5.08305 * 5 3 2 7 7 Si 1.86803 * 119.99892 * 185.08258 * 5 3 2 8 8 H 1.48502 * 109.46971 * 89.99945 * 7 5 3 9 9 H 1.48500 * 109.47061 * 209.99990 * 7 5 3 10 10 H 1.48501 * 109.46936 * 329.99984 * 7 5 3 11 11 C 1.34779 * 119.99761 * 179.97438 * 2 1 3 12 12 O 1.21624 * 119.99832 * 5.48873 * 11 2 1 13 13 C 1.47486 * 119.99795 * 185.48417 * 11 2 1 14 14 N 1.31839 * 126.99775 * 354.40523 * 13 11 2 15 15 N 1.28241 * 110.62691 * 180.27815 * 14 13 11 16 16 H 0.97004 * 124.19279 * 179.73328 * 15 14 13 17 17 C 1.34673 * 111.61552 * 359.69953 * 15 14 13 18 18 C 1.36725 * 107.28006 * 359.97438 * 17 15 14 19 19 C 1.48221 * 127.76379 * 180.02562 * 18 17 15 20 20 C 1.39418 * 119.73545 * 0.04575 * 19 18 17 21 21 C 1.38343 * 119.06441 * 179.72313 * 20 19 18 22 22 C 1.38824 * 118.52114 * 0.52244 * 21 20 19 23 23 C 1.38209 * 119.38341 * 359.47766 * 22 21 20 24 24 N 1.31799 * 120.89434 * 0.25389 * 23 22 21 25 25 H 1.09003 * 109.47272 * 184.73430 * 1 2 3 26 26 H 1.09004 * 109.47374 * 304.74158 * 1 2 3 27 27 H 1.09006 * 109.46826 * 64.73923 * 1 2 3 28 28 H 0.97002 * 119.99993 * 179.97438 * 6 5 3 29 29 H 1.07997 * 126.36057 * 180.02562 * 17 15 14 30 30 H 1.08006 * 120.46730 * 0.02562 * 20 19 18 31 31 H 1.07998 * 120.74096 * 180.30024 * 21 20 19 32 32 H 1.07999 * 120.31328 * 179.75618 * 22 21 20 33 33 H 1.07990 * 119.55304 * 180.27900 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1495 1.1854 0.0000 4 1 3.2251 1.1880 0.0976 5 6 1.4600 2.3863 -0.1255 6 7 0.1464 2.3906 -0.1435 7 14 2.4015 3.9933 -0.2683 8 1 2.6697 4.2843 -1.6997 9 1 1.5945 5.0936 0.3177 10 1 3.6887 3.8796 0.4633 11 6 2.1389 -1.1673 0.0005 12 8 1.5348 -2.2181 -0.0998 13 6 3.6087 -1.1701 0.1226 14 7 4.4057 -0.1201 0.1357 15 7 5.6302 -0.4837 0.2498 16 1 6.3810 0.1300 0.2762 17 6 5.7445 -1.8233 0.3291 18 6 4.4821 -2.3435 0.2591 19 6 4.0846 -3.7707 0.3041 20 6 5.0617 -4.7569 0.4329 21 6 4.6748 -6.0843 0.4793 22 6 3.3227 -6.3843 0.3843 23 6 2.4072 -5.3566 0.2580 24 7 2.8017 -4.0996 0.2219 25 1 -0.3634 -1.0242 0.0848 26 1 -0.3634 0.5857 0.8445 27 1 -0.3633 0.4386 -0.9295 28 1 -0.3346 3.2284 -0.2307 29 1 6.6628 -2.3826 0.4301 30 1 6.1056 -4.4880 0.5005 31 1 5.4085 -6.8699 0.5835 32 1 2.9888 -7.4110 0.4133 33 1 1.3544 -5.5866 0.1884 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191487453.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:25 Heat of formation + Delta-G solvation = 99.639461 kcal Electronic energy + Delta-G solvation = -20418.724908 eV Core-core repulsion = 17254.228533 eV Total energy + Delta-G solvation = -3164.496375 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.19916 -40.57006 -39.83475 -36.54935 -33.73934 -33.31004 -33.08913 -32.24056 -30.16012 -28.39054 -26.61903 -24.69108 -24.45284 -23.35757 -21.44643 -20.67705 -19.73902 -18.34184 -17.54226 -17.34627 -16.61429 -16.52664 -16.27039 -15.98748 -15.85280 -15.41561 -14.62557 -14.57650 -14.33991 -13.83126 -13.70220 -13.39450 -13.33836 -12.88550 -12.70798 -12.48692 -12.37571 -12.05203 -11.03492 -10.92859 -10.87791 -10.50163 -10.38904 -10.16359 -9.77494 -9.53590 -9.00587 -8.12311 -5.69557 0.04294 0.64834 0.89969 1.44118 1.46409 1.56770 1.58563 2.19774 2.36628 2.68838 3.06319 3.26680 3.40375 3.47359 3.87261 4.07738 4.19691 4.24894 4.38377 4.43164 4.56358 4.79578 4.88561 4.93917 5.04208 5.20828 5.30478 5.43748 5.44271 5.47061 5.75232 5.92113 6.04424 6.37301 6.72117 7.11518 7.30203 7.52455 7.78547 8.16035 8.83651 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.027597 B = 0.005909 C = 0.004884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.371916 B = 4737.168703 C = 5732.206104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.145 3.855 2 N -0.458 5.458 3 C -0.347 4.347 4 H 0.156 0.844 5 C -0.028 4.028 6 N -0.914 5.914 7 Si 0.998 3.002 8 H -0.276 1.276 9 H -0.283 1.283 10 H -0.256 1.256 11 C 0.495 3.505 12 O -0.574 6.574 13 C 0.020 3.980 14 N -0.275 5.275 15 N -0.382 5.382 16 H 0.462 0.538 17 C 0.047 3.953 18 C -0.172 4.172 19 C 0.172 3.828 20 C -0.164 4.164 21 C -0.077 4.077 22 C -0.179 4.179 23 C 0.070 3.930 24 N -0.472 5.472 25 H 0.031 0.969 26 H 0.055 0.945 27 H 0.045 0.955 28 H 0.264 0.736 29 H 0.246 0.754 30 H 0.170 0.830 31 H 0.176 0.824 32 H 0.161 0.839 33 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.301 -11.466 1.898 20.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.002 3.998 2 N -0.178 5.178 3 C -0.476 4.476 4 H 0.172 0.828 5 C -0.227 4.227 6 N -0.556 5.556 7 Si 0.822 3.178 8 H -0.202 1.202 9 H -0.209 1.209 10 H -0.180 1.180 11 C 0.283 3.717 12 O -0.457 6.457 13 C -0.143 4.143 14 N -0.109 5.109 15 N -0.095 5.095 16 H 0.309 0.691 17 C -0.099 4.099 18 C -0.184 4.184 19 C 0.034 3.966 20 C -0.184 4.184 21 C -0.103 4.103 22 C -0.199 4.199 23 C -0.088 4.088 24 N -0.180 5.180 25 H 0.050 0.950 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.262 0.738 30 H 0.188 0.812 31 H 0.193 0.807 32 H 0.179 0.821 33 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 15.155 -10.027 1.698 18.251 hybrid contribution 0.194 0.047 -0.034 0.203 sum 15.349 -9.980 1.663 18.384 Atomic orbital electron populations 1.21245 0.80201 0.96579 1.01774 1.43999 1.06215 1.05748 1.61826 1.21640 0.96188 0.82736 1.47003 0.82814 1.26371 0.96603 1.03031 0.96655 1.70374 1.07405 1.27606 1.50247 0.84843 0.78292 0.76309 0.78390 1.20208 1.20858 1.17960 1.17313 0.85739 0.83798 0.84821 1.90759 1.68221 1.30482 1.56209 1.23300 0.94245 0.89884 1.06845 1.73546 0.91262 1.25695 1.20352 1.43437 1.06609 1.07157 1.52263 0.69070 1.23385 0.99135 0.84737 1.02659 1.20047 0.92422 0.91481 1.14440 1.19270 0.89476 0.91389 0.96436 1.22316 1.01006 0.92966 1.02065 1.21906 0.96397 0.96661 0.95320 1.22498 0.94475 1.01221 1.01729 1.23071 1.01118 0.88058 0.96599 1.68315 1.18276 1.21411 1.10033 0.95046 0.92619 0.93668 0.92613 0.73752 0.81241 0.80703 0.82120 0.83794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 8.35 8.85 127.77 1.13 9.49 16 2 N -0.46 -27.01 3.02 -662.55 -2.00 -29.01 16 3 C -0.35 -19.74 9.35 84.10 0.79 -18.95 16 4 H 0.16 8.25 4.14 -17.48 -0.07 8.18 16 5 C -0.03 -1.55 5.46 84.95 0.46 -1.08 16 6 N -0.91 -52.30 9.44 21.68 0.20 -52.09 16 7 Si 1.00 43.05 29.56 68.60 2.03 45.08 16 8 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 9 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 10 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 11 C 0.50 28.31 7.63 86.68 0.66 28.97 16 12 O -0.57 -34.27 12.81 -4.11 -0.05 -34.32 16 13 C 0.02 0.96 7.07 43.85 0.31 1.27 16 14 N -0.28 -11.41 8.67 -44.67 -0.39 -11.80 16 15 N -0.38 -10.19 6.72 -56.90 -0.38 -10.58 16 16 H 0.46 7.49 8.96 -220.10 -1.97 5.52 16 17 C 0.05 1.12 11.46 83.90 0.96 2.08 16 18 C -0.17 -6.41 6.36 -18.71 -0.12 -6.52 16 19 C 0.17 6.20 6.75 41.95 0.28 6.49 16 20 C -0.16 -3.82 9.64 22.58 0.22 -3.60 16 21 C -0.08 -1.51 10.16 22.44 0.23 -1.28 16 22 C -0.18 -4.18 10.11 22.40 0.23 -3.95 16 23 C 0.07 2.37 11.17 84.69 0.95 3.32 16 24 N -0.47 -20.38 6.70 -184.89 -1.24 -21.61 16 25 H 0.03 1.75 6.94 -2.39 -0.02 1.74 16 26 H 0.06 3.26 6.96 -2.38 -0.02 3.24 16 27 H 0.04 2.66 7.13 -2.38 -0.02 2.64 16 28 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 29 H 0.25 2.25 7.43 -2.91 -0.02 2.23 16 30 H 0.17 2.29 7.17 -2.91 -0.02 2.27 16 31 H 0.18 1.75 8.06 -2.91 -0.02 1.72 16 32 H 0.16 2.50 8.06 -2.91 -0.02 2.48 16 33 H 0.14 4.64 8.06 -2.92 -0.02 4.62 16 Total: -1.00 -85.23 283.46 3.41 -81.82 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -0.86 Total: 16.28 kcal Atomic # 6 Polarization: 10.13 SS G_CDS: 6.10 Total: 16.22 kcal Atomic # 7 Polarization: -121.29 SS G_CDS: -3.80 Total: -125.09 kcal Atomic # 8 Polarization: -34.27 SS G_CDS: -0.05 Total: -34.32 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -85.23 3.41 -81.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191487453.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.464 kcal (2) G-P(sol) polarization free energy of solvation -85.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds