Wall clock time and date at job start Mon Mar 30 2020 01:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28713 * 126.03396 * 2 1 4 4 N 1.28511 * 110.64411 * 179.97438 * 3 2 1 5 5 C 1.33328 * 109.44227 * 359.97438 * 4 3 2 6 6 C 1.37029 * 106.36199 * 359.77642 * 5 4 3 7 7 C 1.47197 * 127.18560 * 180.22796 * 6 5 4 8 8 O 1.21629 * 120.00646 * 9.50455 * 7 6 5 9 9 N 1.34784 * 119.99713 * 189.50622 * 7 6 5 10 10 C 1.39855 * 119.99895 * 179.15884 * 9 7 6 11 11 C 1.39313 * 119.94764 * 336.61669 * 10 9 7 12 12 C 1.38476 * 120.42387 * 179.76352 * 11 10 9 13 13 C 1.37688 * 120.32576 * 0.51288 * 12 11 10 14 14 C 1.40750 * 119.88865 * 359.74953 * 13 12 11 15 15 C 1.41402 * 120.20849 * 180.02562 * 14 13 12 16 16 H 1.07996 * 120.00553 * 17.22065 * 15 14 13 17 17 C 1.39937 * 119.99779 * 197.22617 * 15 14 13 18 18 N 1.30829 * 119.99811 * 18.89179 * 17 15 14 19 19 Si 1.86800 * 120.00096 * 198.88989 * 17 15 14 20 20 H 1.48501 * 109.47267 * 90.00083 * 19 17 15 21 21 H 1.48501 * 109.47142 * 210.00026 * 19 17 15 22 22 H 1.48505 * 109.47069 * 329.99736 * 19 17 15 23 23 C 1.38261 * 119.94611 * 156.89593 * 10 9 7 24 24 H 1.09005 * 109.47067 * 99.69205 * 1 2 3 25 25 H 1.08997 * 109.47481 * 219.69469 * 1 2 3 26 26 H 1.09006 * 109.47182 * 339.69297 * 1 2 3 27 27 H 1.07996 * 126.81629 * 180.02562 * 5 4 3 28 28 H 0.96998 * 120.00249 * 359.15841 * 9 7 6 29 29 H 1.08003 * 119.78815 * 0.02660 * 11 10 9 30 30 H 1.08005 * 119.84111 * 180.25717 * 12 11 10 31 31 H 1.07997 * 120.06131 * 179.76641 * 13 12 11 32 32 H 0.97001 * 119.99618 * 180.02562 * 18 17 15 33 33 H 1.07997 * 120.16336 * 359.95060 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2222 1.0409 0.0000 4 7 3.4612 0.6998 0.0005 5 6 3.5554 -0.6301 0.0015 6 6 2.2712 -1.1081 0.0066 7 6 1.8465 -2.5174 0.0142 8 8 2.6660 -3.3988 0.1904 9 7 0.5493 -2.8313 -0.1742 10 6 0.1485 -4.1712 -0.1845 11 6 1.0702 -5.1705 -0.4887 12 6 0.6852 -6.5007 -0.4970 13 6 -0.6165 -6.8494 -0.2148 14 6 -1.5602 -5.8503 0.0890 15 6 -2.8987 -6.2008 0.3804 16 1 -3.1452 -7.2186 0.6444 17 6 -3.9040 -5.2289 0.3267 18 7 -3.7035 -4.1160 -0.3312 19 14 -5.5324 -5.5205 1.1944 20 1 -5.4521 -5.0043 2.5844 21 1 -6.6155 -4.8129 0.4653 22 1 -5.8243 -6.9763 1.2230 23 6 -1.1633 -4.5014 0.1015 24 1 -0.3633 -0.1730 -1.0130 25 1 -0.3634 -0.7907 0.6563 26 1 -0.3634 0.9638 0.3567 27 1 4.4636 -1.2146 0.0025 28 1 -0.1062 -2.1280 -0.3025 29 1 2.0927 -4.9065 -0.7154 30 1 1.4086 -7.2681 -0.7301 31 1 -0.9130 -7.8878 -0.2262 32 1 -4.4002 -3.4421 -0.3681 33 1 -1.8795 -3.7271 0.3338 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193135337.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:23 Heat of formation + Delta-G solvation = 97.928628 kcal Electronic energy + Delta-G solvation = -19991.624859 eV Core-core repulsion = 16827.054297 eV Total energy + Delta-G solvation = -3164.570562 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.38546 -39.83030 -37.28532 -35.36937 -34.24598 -33.42927 -31.50218 -29.62931 -28.55925 -28.37465 -25.43036 -24.10975 -22.47302 -21.64084 -20.98228 -20.07031 -18.00828 -17.61285 -16.93759 -16.69569 -15.79168 -15.26178 -14.88964 -14.66756 -14.47369 -14.19559 -13.63169 -13.29994 -13.03300 -12.87736 -12.45733 -12.17481 -11.78855 -11.53474 -11.21666 -11.21277 -10.94103 -10.79326 -10.35416 -10.23069 -9.93752 -9.75587 -9.55177 -9.26311 -9.08620 -7.53864 -7.14824 -6.82967 -4.49809 0.85479 1.97688 2.22057 2.60694 2.76836 2.97784 3.01255 3.13630 3.21588 3.37813 3.81043 4.06735 4.35999 4.50618 4.65732 4.78879 4.95708 5.07781 5.34726 5.58568 5.94282 6.14167 6.20432 6.42435 6.61799 6.67831 6.86718 6.93087 7.15493 7.43417 7.47731 7.86552 7.93239 7.96991 8.14011 8.22664 8.29827 8.52707 8.76758 8.82466 10.00744 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.022617 B = 0.005131 C = 0.004255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.721123 B = 5455.723415 C = 6578.945960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.275 5.275 3 N -0.061 5.061 4 N -0.277 5.277 5 C 0.026 3.974 6 C -0.065 4.065 7 C 0.583 3.417 8 O -0.497 6.497 9 N -0.655 5.655 10 C 0.139 3.861 11 C -0.243 4.243 12 C -0.083 4.083 13 C -0.229 4.229 14 C 0.117 3.883 15 C -0.455 4.455 16 H 0.080 0.920 17 C 0.076 3.924 18 N -0.796 5.796 19 Si 0.909 3.091 20 H -0.267 1.267 21 H -0.278 1.278 22 H -0.261 1.261 23 C -0.198 4.198 24 H 0.105 0.895 25 H 0.106 0.894 26 H 0.117 0.883 27 H 0.203 0.797 28 H 0.398 0.602 29 H 0.122 0.878 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.279 0.721 33 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.333 7.311 0.304 7.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.074 5.074 3 N -0.043 5.043 4 N -0.140 5.140 5 C -0.134 4.134 6 C -0.198 4.198 7 C 0.367 3.633 8 O -0.371 6.371 9 N -0.301 5.301 10 C 0.048 3.952 11 C -0.264 4.264 12 C -0.102 4.102 13 C -0.249 4.249 14 C 0.114 3.886 15 C -0.484 4.484 16 H 0.098 0.902 17 C -0.141 4.141 18 N -0.422 5.422 19 Si 0.734 3.266 20 H -0.193 1.193 21 H -0.203 1.203 22 H -0.185 1.185 23 C -0.220 4.220 24 H 0.123 0.877 25 H 0.124 0.876 26 H 0.136 0.864 27 H 0.220 0.780 28 H 0.236 0.764 29 H 0.140 0.860 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.090 0.910 33 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.802 8.439 0.345 8.899 hybrid contribution -1.389 -0.840 0.246 1.642 sum 1.413 7.599 0.591 7.751 Atomic orbital electron populations 1.22663 0.72179 1.07290 1.05932 1.47788 1.09477 1.04304 1.45878 1.78194 0.96799 1.11706 1.17554 1.74931 1.09013 1.12563 1.17516 1.23823 0.96927 0.91075 1.01602 1.22543 0.92333 0.89634 1.15328 1.16793 0.83211 0.84973 0.78329 1.90804 1.52114 1.46182 1.47973 1.43743 1.07874 1.08911 1.69546 1.17712 0.94760 0.80528 1.02222 1.20781 0.99590 0.91993 1.14001 1.20473 0.95388 0.94780 0.99562 1.21043 0.94010 0.98031 1.11846 1.17344 0.92689 0.90511 0.88045 1.19620 0.91512 0.96585 1.40702 0.90200 1.25922 1.00878 0.94395 0.92891 1.69790 1.34633 1.07435 1.30381 0.86285 0.80281 0.79977 0.80071 1.19252 1.20284 1.18500 1.21263 0.92700 0.98483 1.09513 0.87666 0.87611 0.86444 0.78021 0.76372 0.86022 0.88859 0.88834 0.90997 0.84804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.51 9.72 59.85 0.58 1.10 16 2 N -0.28 -3.50 3.79 -64.12 -0.24 -3.75 16 3 N -0.06 -0.88 13.14 60.35 0.79 -0.08 16 4 N -0.28 -4.16 12.35 30.48 0.38 -3.78 16 5 C 0.03 0.36 11.88 -17.34 -0.21 0.15 16 6 C -0.07 -0.96 6.97 -82.34 -0.57 -1.53 16 7 C 0.58 10.14 7.66 -12.62 -0.10 10.04 16 8 O -0.50 -10.07 13.84 5.25 0.07 -10.00 16 9 N -0.66 -11.55 5.16 -10.94 -0.06 -11.61 16 10 C 0.14 3.08 6.46 -83.79 -0.54 2.53 16 11 C -0.24 -5.54 8.78 -39.09 -0.34 -5.88 16 12 C -0.08 -1.87 10.01 -39.69 -0.40 -2.27 16 13 C -0.23 -5.45 9.79 -38.83 -0.38 -5.83 16 14 C 0.12 2.96 5.65 -106.85 -0.60 2.36 16 15 C -0.45 -11.35 9.08 -37.74 -0.34 -11.69 16 16 H 0.08 1.93 7.91 -52.49 -0.42 1.52 16 17 C 0.08 1.76 5.19 -17.34 -0.09 1.67 16 18 N -0.80 -18.42 10.56 55.55 0.59 -17.83 16 19 Si 0.91 17.35 29.60 -169.99 -5.03 12.32 16 20 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 21 H -0.28 -5.17 7.11 56.52 0.40 -4.77 16 22 H -0.26 -5.00 7.11 56.52 0.40 -4.59 16 23 C -0.20 -4.72 8.65 -38.68 -0.33 -5.05 16 24 H 0.11 0.74 7.98 -51.93 -0.41 0.32 16 25 H 0.11 0.91 6.49 -51.93 -0.34 0.57 16 26 H 0.12 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.20 2.35 8.06 -52.49 -0.42 1.92 16 28 H 0.40 5.73 4.88 -40.82 -0.20 5.53 16 29 H 0.12 2.75 5.49 -52.48 -0.29 2.46 16 30 H 0.09 1.84 8.06 -52.48 -0.42 1.42 16 31 H 0.09 2.08 8.06 -52.49 -0.42 1.66 16 32 H 0.28 5.79 8.30 -40.82 -0.34 5.45 16 33 H 0.13 3.15 5.66 -52.49 -0.30 2.85 16 LS Contribution 288.63 15.07 4.35 4.35 Total: -1.00 -29.55 288.63 -5.26 -34.81 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -2.78 Total: 9.97 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: -3.33 Total: -14.41 kcal Atomic # 7 Polarization: -38.50 SS G_CDS: 1.46 Total: -37.04 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.07 Total: -10.00 kcal Atomic # 14 Polarization: 17.35 SS G_CDS: -5.03 Total: 12.32 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.55 -5.26 -34.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193135337.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.737 kcal (2) G-P(sol) polarization free energy of solvation -29.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds