Wall clock time and date at job start Mon Mar 30 2020 01:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36837 * 120.00123 * 2 1 4 4 H 1.07998 * 120.00122 * 156.99726 * 3 2 1 5 5 C 1.39055 * 119.99734 * 336.99224 * 3 2 1 6 6 N 1.31358 * 120.00020 * 52.66453 * 5 3 2 7 7 Si 1.86803 * 120.00003 * 232.66375 * 5 3 2 8 8 H 1.48502 * 109.47136 * 359.97438 * 7 5 3 9 9 H 1.48495 * 109.47286 * 120.00050 * 7 5 3 10 10 H 1.48503 * 109.47058 * 240.00526 * 7 5 3 11 11 C 1.34784 * 119.99739 * 179.97438 * 2 1 3 12 12 O 1.21665 * 119.99666 * 187.63336 * 11 2 1 13 13 C 1.47014 * 119.99850 * 7.62900 * 11 2 1 14 14 C 1.38169 * 127.30684 * 339.88180 * 13 11 2 15 15 N 1.33313 * 106.18794 * 180.23165 * 14 13 11 16 16 N 1.28468 * 109.56812 * 359.76675 * 15 14 13 17 17 N 1.28686 * 110.92802 * 359.97438 * 16 15 14 18 18 C 1.40081 * 126.03853 * 179.97438 * 17 16 15 19 19 C 1.38868 * 120.07218 * 133.43944 * 18 17 16 20 20 C 1.38109 * 119.93122 * 180.02562 * 19 18 17 21 21 C 1.38286 * 120.06781 * 359.97438 * 20 19 18 22 22 C 1.38284 * 120.14327 * 359.97438 * 21 20 19 23 23 C 1.38114 * 120.06651 * 0.02562 * 22 21 20 24 24 H 1.08995 * 109.47643 * 236.90889 * 1 2 3 25 25 H 1.08998 * 109.47081 * 356.91692 * 1 2 3 26 26 H 1.09001 * 109.47021 * 116.91017 * 1 2 3 27 27 H 0.96996 * 120.00416 * 179.97438 * 6 5 3 28 28 H 1.08003 * 126.91139 * 0.02562 * 14 13 11 29 29 H 1.08004 * 120.03116 * 0.02562 * 19 18 17 30 30 H 1.07993 * 119.96380 * 180.25839 * 20 19 18 31 31 H 1.08003 * 119.92964 * 179.97438 * 21 20 19 32 32 H 1.07994 * 119.96876 * 180.02562 * 22 21 20 33 33 H 1.08005 * 120.03366 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1492 1.1850 0.0000 4 1 3.1648 1.2222 0.3655 5 6 1.5369 2.3414 -0.4707 6 7 0.3678 2.7056 0.0047 7 14 2.3768 3.3768 -1.7791 8 1 3.6751 2.7552 -2.1443 9 1 1.5090 3.4544 -2.9816 10 1 2.6146 4.7442 -1.2510 11 6 2.1389 -1.1673 0.0005 12 8 3.3474 -1.1719 0.1405 13 6 1.4135 -2.4349 -0.1679 14 6 0.0671 -2.6635 0.0420 15 7 -0.1377 -3.9526 -0.2292 16 7 0.9695 -4.4987 -0.5846 17 7 1.9298 -3.6421 -0.5708 18 6 3.2668 -3.8975 -0.9016 19 6 3.9522 -3.0334 -1.7454 20 6 5.2701 -3.2883 -2.0700 21 6 5.9075 -4.4023 -1.5552 22 6 5.2282 -5.2642 -0.7138 23 6 3.9100 -5.0148 -0.3854 24 1 -0.3634 -0.5610 0.8609 25 1 -0.3633 1.0262 0.0553 26 1 -0.3633 -0.4651 -0.9164 27 1 -0.0593 3.5124 -0.3233 28 1 -0.6705 -1.9436 0.3647 29 1 3.4550 -2.1629 -2.1474 30 1 5.8049 -2.6144 -2.7228 31 1 6.9381 -4.5997 -1.8109 32 1 5.7288 -6.1331 -0.3131 33 1 3.3798 -5.6885 0.2714 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193425170.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:51 Heat of formation + Delta-G solvation = 131.200994 kcal Electronic energy + Delta-G solvation = -20581.780336 eV Core-core repulsion = 17418.652572 eV Total energy + Delta-G solvation = -3163.127764 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.86260 -39.01921 -38.39000 -35.15717 -34.09466 -32.44161 -31.09124 -30.47728 -29.64418 -26.70235 -25.41453 -23.82496 -23.10488 -22.07676 -21.31368 -19.62715 -17.73040 -17.19390 -16.39946 -16.23289 -16.07571 -15.00413 -14.79516 -14.47986 -14.36303 -14.05030 -13.75136 -13.38450 -12.94482 -12.74284 -12.09300 -11.97354 -11.79884 -11.67288 -11.51460 -11.19260 -10.84623 -10.83472 -10.53569 -10.31718 -10.21518 -8.99834 -8.91431 -8.81330 -8.69567 -8.47684 -8.13919 -7.03815 -3.94722 0.92623 1.45264 1.81637 2.55436 2.79922 2.95878 3.13538 3.23603 3.78258 3.83242 3.92162 4.41126 4.62221 4.88051 4.95842 5.06814 5.12772 5.36427 5.41751 5.44856 5.56302 5.68524 5.89122 6.07158 6.15391 6.29127 6.35587 6.45483 6.52313 6.56287 6.77953 6.86073 7.21701 7.35553 7.88623 8.19740 8.78489 8.87061 9.05383 9.71101 9.97717 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.019884 B = 0.006689 C = 0.005276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.804577 B = 4184.843092 C = 5306.225967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.400 5.400 3 C -0.349 4.349 4 H 0.115 0.885 5 C 0.077 3.923 6 N -0.793 5.793 7 Si 0.884 3.116 8 H -0.259 1.259 9 H -0.274 1.274 10 H -0.278 1.278 11 C 0.480 3.520 12 O -0.580 6.580 13 C -0.012 4.012 14 C -0.052 4.052 15 N -0.271 5.271 16 N -0.090 5.090 17 N -0.229 5.229 18 C 0.128 3.872 19 C -0.059 4.059 20 C -0.107 4.107 21 C -0.108 4.108 22 C -0.118 4.118 23 C -0.096 4.096 24 H 0.046 0.954 25 H 0.142 0.858 26 H 0.041 0.959 27 H 0.280 0.720 28 H 0.209 0.791 29 H 0.132 0.868 30 H 0.132 0.868 31 H 0.127 0.873 32 H 0.130 0.870 33 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.939 -7.437 -3.431 9.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.116 5.116 3 C -0.474 4.474 4 H 0.133 0.867 5 C -0.136 4.136 6 N -0.425 5.425 7 Si 0.707 3.293 8 H -0.183 1.183 9 H -0.199 1.199 10 H -0.204 1.204 11 C 0.269 3.731 12 O -0.467 6.467 13 C -0.144 4.144 14 C -0.210 4.210 15 N -0.135 5.135 16 N -0.068 5.068 17 N -0.019 5.019 18 C 0.038 3.962 19 C -0.080 4.080 20 C -0.126 4.126 21 C -0.127 4.127 22 C -0.136 4.136 23 C -0.116 4.116 24 H 0.064 0.936 25 H 0.159 0.841 26 H 0.059 0.941 27 H 0.091 0.909 28 H 0.225 0.775 29 H 0.150 0.850 30 H 0.150 0.850 31 H 0.145 0.855 32 H 0.148 0.852 33 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.892 -8.742 -3.607 10.227 hybrid contribution 0.295 1.661 -0.229 1.702 sum 4.187 -7.082 -3.835 9.077 Atomic orbital electron populations 1.23251 0.81914 1.08916 0.98196 1.43307 1.05369 1.04400 1.58482 1.19397 0.99565 0.84292 1.44149 0.86701 1.25379 0.94996 0.97004 0.96205 1.69966 1.18289 1.21929 1.32281 0.86620 0.81517 0.78908 0.82252 1.18269 1.19914 1.20403 1.16146 0.86624 0.81086 0.89237 1.90680 1.13070 1.85694 1.57249 1.22926 0.94388 0.90033 1.07093 1.24919 0.94810 0.94708 1.06611 1.74707 1.16434 1.07867 1.14539 1.78148 0.90888 1.17264 1.20473 1.44518 1.07606 1.06835 1.42934 1.17425 0.79860 0.98403 1.00521 1.21042 0.95148 0.97288 0.94504 1.20985 0.93624 0.97506 1.00496 1.21254 0.99927 0.94560 0.96918 1.20931 0.93501 1.00191 0.99003 1.20966 0.95055 0.96187 0.99393 0.93564 0.84088 0.94072 0.90853 0.77458 0.85048 0.84981 0.85482 0.85167 0.85236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 8.37 59.85 0.50 0.92 16 2 N -0.40 -9.71 3.02 -123.58 -0.37 -10.08 16 3 C -0.35 -8.97 9.12 -15.01 -0.14 -9.11 16 4 H 0.12 3.16 7.56 -52.49 -0.40 2.77 16 5 C 0.08 1.83 4.97 -17.45 -0.09 1.74 16 6 N -0.79 -18.38 10.89 55.50 0.60 -17.78 16 7 Si 0.88 18.25 29.69 -169.99 -5.05 13.20 16 8 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 9 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 10 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 11 C 0.48 11.68 6.90 -12.70 -0.09 11.59 16 12 O -0.58 -15.37 14.09 5.22 0.07 -15.30 16 13 C -0.01 -0.25 6.65 -81.87 -0.54 -0.80 16 14 C -0.05 -1.03 10.10 -16.93 -0.17 -1.20 16 15 N -0.27 -5.49 12.34 30.70 0.38 -5.12 16 16 N -0.09 -1.84 12.95 60.35 0.78 -1.06 16 17 N -0.23 -4.73 3.47 -6.98 -0.02 -4.75 16 18 C 0.13 2.39 5.73 -83.62 -0.48 1.91 16 19 C -0.06 -1.07 7.72 -39.40 -0.30 -1.37 16 20 C -0.11 -1.54 10.04 -39.61 -0.40 -1.94 16 21 C -0.11 -1.32 10.04 -39.55 -0.40 -1.72 16 22 C -0.12 -1.48 10.04 -39.61 -0.40 -1.88 16 23 C -0.10 -1.50 9.84 -39.39 -0.39 -1.89 16 24 H 0.05 0.86 5.90 -51.93 -0.31 0.55 16 25 H 0.14 3.11 4.45 -51.93 -0.23 2.88 16 26 H 0.04 0.78 7.21 -51.93 -0.37 0.41 16 27 H 0.28 5.92 8.31 -40.82 -0.34 5.58 16 28 H 0.21 3.54 4.68 -52.48 -0.25 3.30 16 29 H 0.13 2.57 7.32 -52.48 -0.38 2.18 16 30 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 31 H 0.13 1.13 8.06 -52.48 -0.42 0.70 16 32 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 33 H 0.13 1.89 8.06 -52.48 -0.42 1.47 16 LS Contribution 284.96 15.07 4.29 4.29 Total: -1.00 -29.11 284.96 -4.97 -34.08 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -2.76 Total: 6.23 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -2.89 Total: -3.72 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: 1.37 Total: -38.78 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: 0.07 Total: -15.30 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.05 Total: 13.20 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.11 -4.97 -34.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193425170.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.279 kcal (2) G-P(sol) polarization free energy of solvation -29.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds