Wall clock time and date at job start Mon Mar 30 2020 01:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36837 * 120.00123 * 2 1 4 4 H 1.07998 * 120.00122 * 156.99726 * 3 2 1 5 5 C 1.39055 * 119.99734 * 336.99224 * 3 2 1 6 6 N 1.31358 * 120.00020 * 52.66453 * 5 3 2 7 7 Si 1.86803 * 120.00003 * 232.66375 * 5 3 2 8 8 H 1.48502 * 109.47136 * 359.97438 * 7 5 3 9 9 H 1.48495 * 109.47286 * 120.00050 * 7 5 3 10 10 H 1.48503 * 109.47058 * 240.00526 * 7 5 3 11 11 C 1.34784 * 119.99739 * 179.97438 * 2 1 3 12 12 O 1.21665 * 119.99666 * 187.63336 * 11 2 1 13 13 C 1.47014 * 119.99850 * 7.62900 * 11 2 1 14 14 C 1.38169 * 127.30684 * 339.88180 * 13 11 2 15 15 N 1.33313 * 106.18794 * 180.23165 * 14 13 11 16 16 N 1.28468 * 109.56812 * 359.76675 * 15 14 13 17 17 N 1.28686 * 110.92802 * 359.97438 * 16 15 14 18 18 C 1.40081 * 126.03853 * 179.97438 * 17 16 15 19 19 C 1.38868 * 120.07218 * 133.43944 * 18 17 16 20 20 C 1.38109 * 119.93122 * 180.02562 * 19 18 17 21 21 C 1.38286 * 120.06781 * 359.97438 * 20 19 18 22 22 C 1.38284 * 120.14327 * 359.97438 * 21 20 19 23 23 C 1.38114 * 120.06651 * 0.02562 * 22 21 20 24 24 H 1.08995 * 109.47643 * 236.90889 * 1 2 3 25 25 H 1.08998 * 109.47081 * 356.91692 * 1 2 3 26 26 H 1.09001 * 109.47021 * 116.91017 * 1 2 3 27 27 H 0.96996 * 120.00416 * 179.97438 * 6 5 3 28 28 H 1.08003 * 126.91139 * 0.02562 * 14 13 11 29 29 H 1.08004 * 120.03116 * 0.02562 * 19 18 17 30 30 H 1.07993 * 119.96380 * 180.25839 * 20 19 18 31 31 H 1.08003 * 119.92964 * 179.97438 * 21 20 19 32 32 H 1.07994 * 119.96876 * 180.02562 * 22 21 20 33 33 H 1.08005 * 120.03366 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1492 1.1850 0.0000 4 1 3.1648 1.2222 0.3655 5 6 1.5369 2.3414 -0.4707 6 7 0.3678 2.7056 0.0047 7 14 2.3768 3.3768 -1.7791 8 1 3.6751 2.7552 -2.1443 9 1 1.5090 3.4544 -2.9816 10 1 2.6146 4.7442 -1.2510 11 6 2.1389 -1.1673 0.0005 12 8 3.3474 -1.1719 0.1405 13 6 1.4135 -2.4349 -0.1679 14 6 0.0671 -2.6635 0.0420 15 7 -0.1377 -3.9526 -0.2292 16 7 0.9695 -4.4987 -0.5846 17 7 1.9298 -3.6421 -0.5708 18 6 3.2668 -3.8975 -0.9016 19 6 3.9522 -3.0334 -1.7454 20 6 5.2701 -3.2883 -2.0700 21 6 5.9075 -4.4023 -1.5552 22 6 5.2282 -5.2642 -0.7138 23 6 3.9100 -5.0148 -0.3854 24 1 -0.3634 -0.5610 0.8609 25 1 -0.3633 1.0262 0.0553 26 1 -0.3633 -0.4651 -0.9164 27 1 -0.0593 3.5124 -0.3233 28 1 -0.6705 -1.9436 0.3647 29 1 3.4550 -2.1629 -2.1474 30 1 5.8049 -2.6144 -2.7228 31 1 6.9381 -4.5997 -1.8109 32 1 5.7288 -6.1331 -0.3131 33 1 3.3798 -5.6885 0.2714 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193425170.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:50 Heat of formation + Delta-G solvation = 113.156049 kcal Electronic energy + Delta-G solvation = -20582.562823 eV Core-core repulsion = 17418.652572 eV Total energy + Delta-G solvation = -3163.910251 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.45043 -40.27546 -40.14589 -36.94859 -35.57937 -34.27065 -32.49343 -31.89771 -30.93836 -28.44970 -27.18235 -25.28255 -24.51069 -23.52169 -22.78916 -21.11771 -19.42958 -18.86278 -18.11965 -17.70510 -17.34794 -16.81155 -16.25930 -16.07054 -15.92543 -15.57568 -15.08455 -14.71452 -14.53978 -14.01242 -13.85027 -13.64612 -13.53877 -13.29396 -12.75220 -12.47992 -12.43136 -12.34892 -12.21563 -12.04647 -11.66274 -10.74243 -10.66871 -10.45288 -10.06786 -9.93849 -9.76447 -8.85429 -5.86543 -0.46832 0.29876 0.39906 1.04822 1.18490 1.30259 1.44045 1.56709 2.08363 2.18286 2.61119 2.66080 2.85212 3.45279 3.64350 3.75421 3.82873 3.92297 4.14175 4.15613 4.35452 4.45006 4.52356 4.58036 4.67752 4.93150 4.94361 5.11295 5.26369 5.26955 5.41472 5.54205 5.55556 5.92059 5.99609 6.34235 6.96170 7.19238 7.23468 7.87296 8.17732 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.019884 B = 0.006689 C = 0.005276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.804577 B = 4184.843092 C = 5306.225967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.408 5.408 3 C -0.397 4.397 4 H 0.081 0.919 5 C 0.061 3.939 6 N -0.799 5.799 7 Si 0.947 3.053 8 H -0.277 1.277 9 H -0.261 1.261 10 H -0.265 1.265 11 C 0.474 3.526 12 O -0.614 6.614 13 C -0.039 4.039 14 C -0.034 4.034 15 N -0.281 5.281 16 N -0.089 5.089 17 N -0.221 5.221 18 C 0.084 3.916 19 C -0.086 4.086 20 C -0.113 4.113 21 C -0.091 4.091 22 C -0.105 4.105 23 C -0.106 4.106 24 H 0.067 0.933 25 H 0.133 0.867 26 H 0.056 0.944 27 H 0.294 0.706 28 H 0.233 0.767 29 H 0.099 0.901 30 H 0.153 0.847 31 H 0.174 0.826 32 H 0.174 0.826 33 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.707 -8.195 -4.118 10.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.123 5.123 3 C -0.522 4.522 4 H 0.099 0.901 5 C -0.153 4.153 6 N -0.429 5.429 7 Si 0.768 3.232 8 H -0.202 1.202 9 H -0.186 1.186 10 H -0.190 1.190 11 C 0.264 3.736 12 O -0.503 6.503 13 C -0.172 4.172 14 C -0.193 4.193 15 N -0.144 5.144 16 N -0.067 5.067 17 N -0.011 5.011 18 C -0.006 4.006 19 C -0.106 4.106 20 C -0.131 4.131 21 C -0.109 4.109 22 C -0.123 4.123 23 C -0.125 4.125 24 H 0.085 0.915 25 H 0.150 0.850 26 H 0.074 0.926 27 H 0.106 0.894 28 H 0.249 0.751 29 H 0.117 0.883 30 H 0.170 0.830 31 H 0.191 0.809 32 H 0.192 0.808 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.619 -9.488 -4.291 11.392 hybrid contribution 0.122 1.831 -0.015 1.836 sum 4.740 -7.657 -4.306 9.982 Atomic orbital electron populations 1.23295 0.80078 1.08864 0.99855 1.43411 1.06604 1.03998 1.58309 1.19141 0.98950 0.85800 1.48340 0.90081 1.25902 0.95812 0.97371 0.96255 1.69915 1.18634 1.22516 1.31858 0.85699 0.79803 0.77751 0.79897 1.20230 1.18552 1.18991 1.16429 0.86470 0.81886 0.88862 1.90620 1.14575 1.86423 1.58706 1.22719 0.95188 0.89892 1.09390 1.25270 0.94305 0.94809 1.04891 1.74714 1.16448 1.07998 1.15270 1.78089 0.91068 1.17390 1.20191 1.44738 1.08460 1.06260 1.41644 1.17910 0.79439 1.00447 1.02760 1.20999 0.96886 0.96786 0.95975 1.21343 0.92245 0.98837 1.00698 1.21792 1.01653 0.92631 0.94825 1.21474 0.92034 1.01113 0.97700 1.21233 0.96533 0.95231 0.99539 0.91477 0.84971 0.92567 0.89450 0.75141 0.88262 0.82981 0.80871 0.80848 0.84730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.88 8.37 127.77 1.07 1.95 16 2 N -0.41 -20.48 3.02 -663.11 -2.00 -22.48 16 3 C -0.40 -21.31 9.12 84.11 0.77 -20.54 16 4 H 0.08 4.79 7.56 -2.91 -0.02 4.77 16 5 C 0.06 2.90 4.97 84.96 0.42 3.32 16 6 N -0.80 -36.54 10.89 21.68 0.24 -36.31 16 7 Si 0.95 37.63 29.69 68.60 2.04 39.67 16 8 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 9 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 10 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 11 C 0.47 24.11 6.90 86.54 0.60 24.70 16 12 O -0.61 -34.44 14.09 -4.24 -0.06 -34.50 16 13 C -0.04 -1.74 6.65 40.57 0.27 -1.47 16 14 C -0.03 -1.33 10.10 84.45 0.85 -0.48 16 15 N -0.28 -11.28 12.34 -56.77 -0.70 -11.98 16 16 N -0.09 -3.67 12.95 37.02 0.48 -3.19 16 17 N -0.22 -9.32 3.47 -176.00 -0.61 -9.93 16 18 C 0.08 3.19 5.73 38.12 0.22 3.41 16 19 C -0.09 -3.19 7.72 22.39 0.17 -3.02 16 20 C -0.11 -3.12 10.04 22.25 0.22 -2.90 16 21 C -0.09 -1.90 10.04 22.29 0.22 -1.68 16 22 C -0.11 -2.28 10.04 22.25 0.22 -2.06 16 23 C -0.11 -3.18 9.84 22.39 0.22 -2.96 16 24 H 0.07 2.45 5.90 -2.39 -0.01 2.44 16 25 H 0.13 5.79 4.45 -2.39 -0.01 5.78 16 26 H 0.06 2.12 7.21 -2.39 -0.02 2.10 16 27 H 0.29 11.96 8.31 -92.71 -0.77 11.19 16 28 H 0.23 7.61 4.68 -2.91 -0.01 7.60 16 29 H 0.10 4.22 7.32 -2.91 -0.02 4.20 16 30 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 31 H 0.17 2.07 8.06 -2.91 -0.02 2.04 16 32 H 0.17 2.28 8.06 -2.91 -0.02 2.26 16 33 H 0.13 3.81 8.06 -2.91 -0.02 3.78 16 Total: -1.00 -66.09 284.96 5.80 -60.29 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: 1.16 Total: 20.15 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: 5.26 Total: -1.72 kcal Atomic # 7 Polarization: -81.29 SS G_CDS: -2.60 Total: -83.89 kcal Atomic # 8 Polarization: -34.44 SS G_CDS: -0.06 Total: -34.50 kcal Atomic # 14 Polarization: 37.63 SS G_CDS: 2.04 Total: 39.67 kcal Total: -66.09 5.80 -60.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193425170.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.444 kcal (2) G-P(sol) polarization free energy of solvation -66.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds