Wall clock time and date at job start Mon Mar 30 2020 01:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36878 * 119.99769 * 2 1 4 4 H 1.08002 * 119.99368 * 139.06027 * 3 2 1 5 5 C 1.39016 * 120.00189 * 319.06260 * 3 2 1 6 6 N 1.31394 * 119.99999 * 173.99676 * 5 3 2 7 7 Si 1.86800 * 120.00089 * 353.99933 * 5 3 2 8 8 H 1.48501 * 109.47395 * 91.86658 * 7 5 3 9 9 H 1.48498 * 109.46989 * 211.87026 * 7 5 3 10 10 H 1.48501 * 109.47147 * 331.86885 * 7 5 3 11 11 C 1.34775 * 119.99781 * 180.02562 * 2 1 3 12 12 O 1.21730 * 119.99713 * 180.45925 * 11 2 1 13 13 C 1.46581 * 120.00463 * 0.46101 * 11 2 1 14 14 C 1.36784 * 126.86171 * 340.47801 * 13 11 2 15 15 N 1.33321 * 107.85498 * 179.97438 * 14 13 11 16 16 C 1.30851 * 109.77338 * 359.74847 * 15 14 13 17 17 N 1.34886 * 109.13175 * 0.41419 * 16 15 14 18 18 C 1.39720 * 126.51549 * 179.86150 * 17 16 15 19 19 C 1.38970 * 119.68821 * 352.16956 * 18 17 16 20 20 C 1.38406 * 119.10087 * 179.72135 * 19 18 17 21 21 C 1.38805 * 118.48745 * 0.52185 * 20 19 18 22 22 C 1.38118 * 119.29482 * 359.45987 * 21 20 19 23 23 N 1.31896 * 120.84328 * 0.29422 * 22 21 20 24 24 H 1.08999 * 109.47510 * 262.22848 * 1 2 3 25 25 H 1.09001 * 109.47090 * 22.23221 * 1 2 3 26 26 H 1.09003 * 109.46824 * 142.22800 * 1 2 3 27 27 H 0.97001 * 119.99926 * 180.02562 * 6 5 3 28 28 H 1.08006 * 126.07056 * 359.96116 * 14 13 11 29 29 H 1.07998 * 125.43125 * 180.27315 * 16 15 14 30 30 H 1.08003 * 120.44895 * 0.02562 * 19 18 17 31 31 H 1.08007 * 120.75325 * 180.25576 * 20 19 18 32 32 H 1.08003 * 120.35067 * 179.72879 * 21 20 19 33 33 H 1.08001 * 119.57711 * 180.27972 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1494 1.1854 0.0000 4 1 3.0312 1.2997 0.6129 5 6 1.7093 2.2421 -0.7888 6 7 2.2940 3.4155 -0.7009 7 14 0.2866 1.9939 -1.9737 8 1 -0.9879 2.3454 -1.2976 9 1 0.4738 2.8655 -3.1613 10 1 0.2431 0.5733 -2.4042 11 6 2.1389 -1.1672 -0.0005 12 8 3.3561 -1.1672 0.0079 13 6 1.4060 -2.4366 -0.0113 14 6 0.1000 -2.6332 0.3444 15 7 -0.1749 -3.9287 0.1911 16 6 0.8857 -4.5575 -0.2470 17 7 1.8972 -3.6758 -0.3839 18 6 3.1928 -3.9585 -0.8242 19 6 3.5824 -5.2790 -1.0138 20 6 4.8667 -5.5449 -1.4558 21 6 5.7233 -4.4766 -1.6830 22 6 5.2684 -3.1894 -1.4737 23 7 4.0370 -2.9667 -1.0569 24 1 -0.3634 -0.1390 1.0182 25 1 -0.3633 0.9513 -0.3888 26 1 -0.3633 -0.8124 -0.6295 27 1 1.9866 4.1529 -1.2511 28 1 -0.5865 -1.8738 0.6886 29 1 0.9427 -5.6143 -0.4622 30 1 2.8908 -6.0864 -0.8237 31 1 5.1963 -6.5609 -1.6161 32 1 6.7333 -4.6498 -2.0239 33 1 5.9296 -2.3545 -1.6534 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198187408.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:31 Heat of formation + Delta-G solvation = 132.159066 kcal Electronic energy + Delta-G solvation = -20729.537166 eV Core-core repulsion = 17566.450947 eV Total energy + Delta-G solvation = -3163.086219 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.25456 -39.85293 -38.24509 -34.98283 -33.92183 -32.52578 -32.10931 -30.08277 -29.43220 -26.60093 -25.22021 -23.95041 -23.78353 -21.80145 -20.80558 -19.58474 -17.79020 -17.11081 -16.36297 -16.11982 -15.78112 -15.67698 -15.39771 -15.04858 -14.18532 -13.92037 -13.67886 -13.47136 -13.38922 -13.07445 -12.48790 -12.26014 -12.14096 -11.91814 -11.67786 -10.84276 -10.64565 -10.22309 -10.12592 -9.89674 -9.81650 -9.35602 -9.03359 -8.63049 -8.26774 -8.20366 -7.64918 -6.34267 -3.99548 0.68757 1.23617 2.06738 2.53783 3.05318 3.12700 3.24693 3.25473 3.89824 4.11619 4.14528 4.37039 4.44833 4.54316 4.78961 4.89459 4.95666 4.99573 5.11904 5.38748 5.53371 5.59212 5.63304 5.76905 5.85447 6.02721 6.05947 6.21343 6.29888 6.48909 6.77525 7.24663 7.59946 7.97412 8.16586 8.28207 8.54742 8.97552 9.29434 9.81656 10.76740 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.021333 B = 0.006972 C = 0.005681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.189232 B = 4015.043895 C = 4927.254491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.460 5.460 3 C -0.301 4.301 4 H 0.108 0.892 5 C 0.054 3.946 6 N -0.872 5.872 7 Si 0.897 3.103 8 H -0.274 1.274 9 H -0.292 1.292 10 H -0.266 1.266 11 C 0.525 3.475 12 O -0.511 6.511 13 C -0.020 4.020 14 C -0.012 4.012 15 N -0.482 5.482 16 C 0.188 3.812 17 N -0.386 5.386 18 C 0.331 3.669 19 C -0.185 4.185 20 C -0.061 4.061 21 C -0.188 4.188 22 C 0.133 3.867 23 N -0.418 5.418 24 H 0.057 0.943 25 H 0.061 0.939 26 H 0.066 0.934 27 H 0.274 0.726 28 H 0.192 0.808 29 H 0.210 0.790 30 H 0.137 0.863 31 H 0.140 0.860 32 H 0.138 0.862 33 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.605 -16.978 -2.514 17.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 N -0.183 5.183 3 C -0.429 4.429 4 H 0.125 0.875 5 C -0.151 4.151 6 N -0.509 5.509 7 Si 0.726 3.274 8 H -0.202 1.202 9 H -0.220 1.220 10 H -0.191 1.191 11 C 0.311 3.689 12 O -0.388 6.388 13 C -0.135 4.135 14 C -0.160 4.160 15 N -0.199 5.199 16 C -0.093 4.093 17 N -0.067 5.067 18 C 0.103 3.897 19 C -0.207 4.207 20 C -0.088 4.088 21 C -0.208 4.208 22 C -0.026 4.026 23 N -0.128 5.128 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.209 0.791 29 H 0.227 0.773 30 H 0.155 0.845 31 H 0.158 0.842 32 H 0.156 0.844 33 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 0.304 -16.238 -2.286 16.401 hybrid contribution 0.131 -0.466 -0.890 1.013 sum 0.435 -16.704 -3.177 17.009 Atomic orbital electron populations 1.22523 0.84214 1.01675 1.00836 1.43271 1.03722 1.05048 1.66253 1.19044 1.12263 0.86223 1.25349 0.87487 1.25452 0.98118 0.95324 0.96204 1.69629 1.40891 1.01146 1.39216 0.86696 0.81462 0.78643 0.80572 1.20154 1.21951 1.19119 1.16694 0.87166 0.81351 0.83689 1.90788 1.11934 1.85452 1.50591 1.21829 0.95493 0.87702 1.08466 1.23349 0.93845 0.93788 1.05054 1.70109 1.26013 1.06250 1.17571 1.25003 0.82393 0.97292 1.04574 1.42702 1.08210 1.08543 1.47233 1.18408 0.84967 0.89904 0.96410 1.21521 0.98600 0.95000 1.05628 1.21345 0.92221 0.99895 0.95316 1.22259 1.01397 0.93932 1.03243 1.22867 0.91240 0.96363 0.92116 1.67965 1.03515 1.32539 1.08770 0.92462 0.92117 0.91518 0.91528 0.79094 0.77329 0.84489 0.84203 0.84390 0.81881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.04 6.85 59.85 0.41 1.45 16 2 N -0.46 -11.61 2.63 -123.72 -0.33 -11.93 16 3 C -0.30 -8.66 9.42 -15.01 -0.14 -8.80 16 4 H 0.11 3.42 7.97 -52.49 -0.42 3.00 16 5 C 0.05 1.53 5.47 -17.45 -0.10 1.43 16 6 N -0.87 -25.58 13.96 55.50 0.77 -24.80 16 7 Si 0.90 21.28 24.53 -169.99 -4.17 17.11 16 8 H -0.27 -6.02 6.82 56.52 0.39 -5.64 16 9 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 10 H -0.27 -6.29 6.65 56.52 0.38 -5.91 16 11 C 0.52 13.14 7.41 -12.90 -0.10 13.04 16 12 O -0.51 -14.05 13.22 5.16 0.07 -13.99 16 13 C -0.02 -0.42 6.55 -82.06 -0.54 -0.96 16 14 C -0.01 -0.22 9.65 -17.43 -0.17 -0.39 16 15 N -0.48 -8.22 11.20 -14.31 -0.16 -8.38 16 16 C 0.19 2.81 11.83 -90.23 -1.07 1.74 16 17 N -0.39 -7.02 2.98 -60.34 -0.18 -7.20 16 18 C 0.33 5.70 7.47 -154.45 -1.15 4.55 16 19 C -0.19 -2.22 9.50 -39.25 -0.37 -2.59 16 20 C -0.06 -0.61 10.17 -39.31 -0.40 -1.01 16 21 C -0.19 -2.04 10.11 -39.42 -0.40 -2.44 16 22 C 0.13 2.02 11.18 -17.57 -0.20 1.82 16 23 N -0.42 -8.22 6.19 -12.31 -0.08 -8.30 16 24 H 0.06 1.01 7.20 -51.93 -0.37 0.63 16 25 H 0.06 1.30 2.88 -51.93 -0.15 1.15 16 26 H 0.07 1.26 5.57 -51.93 -0.29 0.97 16 27 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 28 H 0.19 3.13 4.92 -52.48 -0.26 2.87 16 29 H 0.21 1.99 7.07 -52.49 -0.37 1.62 16 30 H 0.14 1.17 6.79 -52.48 -0.36 0.81 16 31 H 0.14 0.86 8.06 -52.48 -0.42 0.43 16 32 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 33 H 0.16 2.25 8.06 -52.49 -0.42 1.83 16 LS Contribution 275.75 15.07 4.16 4.16 Total: -1.00 -35.76 275.75 -6.79 -42.55 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -2.66 Total: 2.93 kcal Atomic # 6 Polarization: 12.07 SS G_CDS: -4.22 Total: 7.85 kcal Atomic # 7 Polarization: -60.64 SS G_CDS: 0.03 Total: -60.61 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: 0.07 Total: -13.99 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.17 Total: 17.11 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -35.76 -6.79 -42.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198187408.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.705 kcal (2) G-P(sol) polarization free energy of solvation -35.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds