Wall clock time and date at job start Mon Mar 30 2020 01:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36878 * 119.99769 * 2 1 4 4 H 1.08002 * 119.99368 * 139.06027 * 3 2 1 5 5 C 1.39016 * 120.00189 * 319.06260 * 3 2 1 6 6 N 1.31394 * 119.99999 * 173.99676 * 5 3 2 7 7 Si 1.86800 * 120.00089 * 353.99933 * 5 3 2 8 8 H 1.48501 * 109.47395 * 91.86658 * 7 5 3 9 9 H 1.48498 * 109.46989 * 211.87026 * 7 5 3 10 10 H 1.48501 * 109.47147 * 331.86885 * 7 5 3 11 11 C 1.34775 * 119.99781 * 180.02562 * 2 1 3 12 12 O 1.21730 * 119.99713 * 180.45925 * 11 2 1 13 13 C 1.46581 * 120.00463 * 0.46101 * 11 2 1 14 14 C 1.36784 * 126.86171 * 340.47801 * 13 11 2 15 15 N 1.33321 * 107.85498 * 179.97438 * 14 13 11 16 16 C 1.30851 * 109.77338 * 359.74847 * 15 14 13 17 17 N 1.34886 * 109.13175 * 0.41419 * 16 15 14 18 18 C 1.39720 * 126.51549 * 179.86150 * 17 16 15 19 19 C 1.38970 * 119.68821 * 352.16956 * 18 17 16 20 20 C 1.38406 * 119.10087 * 179.72135 * 19 18 17 21 21 C 1.38805 * 118.48745 * 0.52185 * 20 19 18 22 22 C 1.38118 * 119.29482 * 359.45987 * 21 20 19 23 23 N 1.31896 * 120.84328 * 0.29422 * 22 21 20 24 24 H 1.08999 * 109.47510 * 262.22848 * 1 2 3 25 25 H 1.09001 * 109.47090 * 22.23221 * 1 2 3 26 26 H 1.09003 * 109.46824 * 142.22800 * 1 2 3 27 27 H 0.97001 * 119.99926 * 180.02562 * 6 5 3 28 28 H 1.08006 * 126.07056 * 359.96116 * 14 13 11 29 29 H 1.07998 * 125.43125 * 180.27315 * 16 15 14 30 30 H 1.08003 * 120.44895 * 0.02562 * 19 18 17 31 31 H 1.08007 * 120.75325 * 180.25576 * 20 19 18 32 32 H 1.08003 * 120.35067 * 179.72879 * 21 20 19 33 33 H 1.08001 * 119.57711 * 180.27972 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1494 1.1854 0.0000 4 1 3.0312 1.2997 0.6129 5 6 1.7093 2.2421 -0.7888 6 7 2.2940 3.4155 -0.7009 7 14 0.2866 1.9939 -1.9737 8 1 -0.9879 2.3454 -1.2976 9 1 0.4738 2.8655 -3.1613 10 1 0.2431 0.5733 -2.4042 11 6 2.1389 -1.1672 -0.0005 12 8 3.3561 -1.1672 0.0079 13 6 1.4060 -2.4366 -0.0113 14 6 0.1000 -2.6332 0.3444 15 7 -0.1749 -3.9287 0.1911 16 6 0.8857 -4.5575 -0.2470 17 7 1.8972 -3.6758 -0.3839 18 6 3.1928 -3.9585 -0.8242 19 6 3.5824 -5.2790 -1.0138 20 6 4.8667 -5.5449 -1.4558 21 6 5.7233 -4.4766 -1.6830 22 6 5.2684 -3.1894 -1.4737 23 7 4.0370 -2.9667 -1.0569 24 1 -0.3634 -0.1390 1.0182 25 1 -0.3633 0.9513 -0.3888 26 1 -0.3633 -0.8124 -0.6295 27 1 1.9866 4.1529 -1.2511 28 1 -0.5865 -1.8738 0.6886 29 1 0.9427 -5.6143 -0.4622 30 1 2.8908 -6.0864 -0.8237 31 1 5.1963 -6.5609 -1.6161 32 1 6.7333 -4.6498 -2.0239 33 1 5.9296 -2.3545 -1.6534 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198187408.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:31 Heat of formation + Delta-G solvation = 107.270736 kcal Electronic energy + Delta-G solvation = -20730.616405 eV Core-core repulsion = 17566.450947 eV Total energy + Delta-G solvation = -3164.165458 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.55353 -40.92745 -40.09850 -36.81378 -35.23863 -34.18885 -33.53583 -31.42423 -30.70217 -28.32366 -27.12125 -25.11434 -24.84949 -23.38320 -22.05277 -20.94688 -19.41748 -18.97456 -17.81284 -17.55370 -17.07420 -16.93339 -16.90092 -16.16987 -15.87382 -15.52629 -15.12636 -14.84816 -14.64517 -14.38595 -14.22755 -13.87379 -13.78037 -13.45638 -12.93339 -12.71322 -12.17001 -11.83752 -11.67616 -11.57847 -11.05913 -10.91242 -10.66548 -9.95739 -9.80198 -9.61124 -9.52187 -8.49411 -6.21916 -0.40753 0.29339 0.77591 1.17779 1.31153 1.34414 1.40584 1.84297 2.15141 2.40131 2.63004 2.86608 2.98815 3.37895 3.53966 3.63140 3.92852 4.03204 4.06863 4.11386 4.13420 4.34076 4.44107 4.47554 4.64059 4.67381 4.78105 5.09044 5.19311 5.34468 5.54921 5.61864 5.98585 6.08363 6.54975 6.70146 6.91655 7.09584 7.21294 7.87615 8.66724 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.021333 B = 0.006972 C = 0.005681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.189232 B = 4015.043895 C = 4927.254491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.478 5.478 3 C -0.318 4.318 4 H 0.047 0.953 5 C 0.005 3.995 6 N -0.920 5.920 7 Si 0.968 3.032 8 H -0.236 1.236 9 H -0.293 1.293 10 H -0.265 1.265 11 C 0.522 3.478 12 O -0.552 6.552 13 C -0.077 4.077 14 C 0.014 3.986 15 N -0.501 5.501 16 C 0.223 3.777 17 N -0.391 5.391 18 C 0.283 3.717 19 C -0.164 4.164 20 C -0.050 4.050 21 C -0.164 4.164 22 C 0.094 3.906 23 N -0.488 5.488 24 H 0.088 0.912 25 H 0.055 0.945 26 H 0.088 0.912 27 H 0.280 0.720 28 H 0.207 0.793 29 H 0.269 0.731 30 H 0.182 0.818 31 H 0.195 0.805 32 H 0.177 0.823 33 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.303 -21.703 -3.706 22.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 N -0.202 5.202 3 C -0.446 4.446 4 H 0.065 0.935 5 C -0.196 4.196 6 N -0.559 5.559 7 Si 0.793 3.207 8 H -0.161 1.161 9 H -0.221 1.221 10 H -0.189 1.189 11 C 0.310 3.690 12 O -0.431 6.431 13 C -0.191 4.191 14 C -0.136 4.136 15 N -0.218 5.218 16 C -0.058 4.058 17 N -0.072 5.072 18 C 0.056 3.944 19 C -0.186 4.186 20 C -0.076 4.076 21 C -0.184 4.184 22 C -0.064 4.064 23 N -0.199 5.199 24 H 0.106 0.894 25 H 0.074 0.926 26 H 0.106 0.894 27 H 0.090 0.910 28 H 0.224 0.776 29 H 0.284 0.716 30 H 0.199 0.801 31 H 0.212 0.788 32 H 0.194 0.806 33 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -1.594 -20.977 -3.463 21.320 hybrid contribution 0.922 0.754 -0.483 1.285 sum -0.672 -20.223 -3.946 20.615 Atomic orbital electron populations 1.22708 0.81152 1.02085 1.03277 1.43319 1.05580 1.03961 1.67322 1.18605 1.11680 0.88620 1.25705 0.93543 1.26277 1.01405 0.94403 0.97535 1.69765 1.43206 1.02248 1.40640 0.85588 0.79043 0.78388 0.77715 1.16061 1.22095 1.18949 1.17318 0.87096 0.82841 0.81760 1.90754 1.14045 1.86589 1.51737 1.21227 0.96539 0.87543 1.13829 1.23586 0.92586 0.94919 1.02479 1.70211 1.26886 1.05378 1.19338 1.26216 0.80580 0.98845 1.00146 1.42984 1.09405 1.07849 1.46923 1.18894 0.84642 0.91584 0.99283 1.22038 1.00111 0.93431 1.03031 1.22019 0.90865 1.01808 0.92874 1.22633 1.03168 0.92166 1.00398 1.22940 0.90504 0.98549 0.94403 1.67604 1.05618 1.35746 1.10890 0.89401 0.92644 0.89420 0.91017 0.77617 0.71579 0.80085 0.78782 0.80563 0.83207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.99 6.85 127.77 0.88 2.87 16 2 N -0.48 -25.22 2.63 -663.54 -1.74 -26.96 16 3 C -0.32 -19.68 9.42 84.09 0.79 -18.89 16 4 H 0.05 3.33 7.97 -2.91 -0.02 3.31 16 5 C 0.00 0.28 5.47 84.94 0.46 0.74 16 6 N -0.92 -57.03 13.96 21.68 0.30 -56.73 16 7 Si 0.97 44.58 24.53 68.60 1.68 46.26 16 8 H -0.24 -9.38 6.82 99.48 0.68 -8.70 16 9 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 10 H -0.26 -12.02 6.65 99.48 0.66 -11.36 16 11 C 0.52 27.57 7.41 86.42 0.64 28.21 16 12 O -0.55 -33.04 13.22 -4.44 -0.06 -33.10 16 13 C -0.08 -3.24 6.55 39.94 0.26 -2.98 16 14 C 0.01 0.49 9.65 84.13 0.81 1.30 16 15 N -0.50 -15.30 11.20 -199.18 -2.23 -17.53 16 16 C 0.22 5.71 11.83 180.21 2.13 7.85 16 17 N -0.39 -13.65 2.98 -344.83 -1.03 -14.68 16 18 C 0.28 9.45 7.47 132.80 0.99 10.44 16 19 C -0.16 -3.21 9.50 22.49 0.21 -2.99 16 20 C -0.05 -0.73 10.17 22.45 0.23 -0.50 16 21 C -0.16 -3.12 10.11 22.38 0.23 -2.90 16 22 C 0.09 2.98 11.18 84.65 0.95 3.92 16 23 N -0.49 -20.08 6.19 -192.86 -1.19 -21.28 16 24 H 0.09 2.96 7.20 -2.39 -0.02 2.94 16 25 H 0.06 2.28 2.88 -2.39 -0.01 2.28 16 26 H 0.09 3.15 5.57 -2.39 -0.01 3.14 16 27 H 0.28 15.88 8.31 -92.71 -0.77 15.11 16 28 H 0.21 6.25 4.92 -2.91 -0.01 6.24 16 29 H 0.27 3.19 7.07 -2.91 -0.02 3.16 16 30 H 0.18 1.77 6.79 -2.91 -0.02 1.75 16 31 H 0.20 0.82 8.06 -2.91 -0.02 0.80 16 32 H 0.18 1.92 8.06 -2.91 -0.02 1.90 16 33 H 0.15 4.70 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -89.83 275.75 5.40 -84.43 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: 1.09 Total: 12.51 kcal Atomic # 6 Polarization: 18.50 SS G_CDS: 8.58 Total: 27.08 kcal Atomic # 7 Polarization: -131.29 SS G_CDS: -5.89 Total: -137.18 kcal Atomic # 8 Polarization: -33.04 SS G_CDS: -0.06 Total: -33.10 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.68 Total: 46.26 kcal Total: -89.83 5.40 -84.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198187408.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.699 kcal (2) G-P(sol) polarization free energy of solvation -89.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds