Wall clock time and date at job start Mon Mar 30 2020 01:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36868 * 120.00023 * 2 1 4 4 H 1.08000 * 119.99717 * 205.05432 * 3 2 1 5 5 C 1.39019 * 120.00152 * 24.78821 * 3 2 1 6 6 N 1.31392 * 119.99305 * 304.75864 * 5 3 2 7 7 Si 1.86795 * 120.00457 * 124.75537 * 5 3 2 8 8 H 1.48504 * 109.46705 * 90.00029 * 7 5 3 9 9 H 1.48503 * 109.47139 * 209.99751 * 7 5 3 10 10 H 1.48502 * 109.47078 * 330.00225 * 7 5 3 11 11 C 1.34777 * 119.99719 * 180.02562 * 2 1 3 12 12 O 1.21735 * 120.00004 * 186.00248 * 11 2 1 13 13 C 1.46585 * 120.00300 * 6.00312 * 11 2 1 14 14 C 1.36789 * 126.86067 * 15.60192 * 13 11 2 15 15 N 1.33329 * 107.84858 * 180.02562 * 14 13 11 16 16 C 1.30851 * 109.76795 * 0.02562 * 15 14 13 17 17 N 1.34865 * 109.13738 * 359.72328 * 16 15 14 18 18 C 1.39834 * 126.51657 * 180.28950 * 17 16 15 19 19 C 1.39339 * 120.85562 * 54.25374 * 18 17 16 20 20 C 1.37991 * 119.08270 * 179.75142 * 19 18 17 21 21 N 1.31944 * 120.83251 * 0.52973 * 20 19 18 22 22 C 1.31943 * 121.88597 * 359.72484 * 21 20 19 23 23 C 1.37997 * 120.83492 * 0.02562 * 22 21 20 24 24 H 1.09000 * 109.46681 * 336.69072 * 1 2 3 25 25 H 1.08994 * 109.46939 * 96.69440 * 1 2 3 26 26 H 1.09002 * 109.46739 * 216.69805 * 1 2 3 27 27 H 0.97008 * 119.99830 * 180.02562 * 6 5 3 28 28 H 1.08003 * 126.07675 * 0.02562 * 14 13 11 29 29 H 1.07995 * 125.43104 * 180.02562 * 16 15 14 30 30 H 1.08002 * 120.46036 * 359.97438 * 19 18 17 31 31 H 1.08003 * 119.58650 * 180.25353 * 20 19 18 32 32 H 1.08000 * 119.58671 * 179.97438 * 22 21 20 33 33 H 1.07992 * 120.46453 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1494 1.1853 0.0000 4 1 3.1532 1.2293 -0.3961 5 6 1.5504 2.3338 0.5048 6 7 0.3920 2.7331 0.0305 7 14 2.3923 3.3092 1.8572 8 1 3.2759 4.3366 1.2497 9 1 1.3663 3.9744 2.6999 10 1 3.2041 2.3921 2.6970 11 6 2.1389 -1.1672 -0.0005 12 8 3.3512 -1.1702 0.1097 13 6 1.4120 -2.4332 -0.1338 14 6 0.1214 -2.5978 -0.5561 15 7 -0.1532 -3.9023 -0.5323 16 6 0.8944 -4.5675 -0.1174 17 7 1.8958 -3.7009 0.1379 18 6 3.1783 -4.0221 0.5934 19 6 3.9680 -4.9462 -0.0877 20 6 5.2301 -5.2320 0.3912 21 7 5.6864 -4.6506 1.4843 22 6 4.9672 -3.7745 2.1598 23 6 3.6972 -3.4308 1.7435 24 1 -0.3633 0.9438 0.4067 25 1 -0.3633 -0.1198 -1.0206 26 1 -0.3633 -0.8240 0.6142 27 1 -0.0259 3.5347 0.3824 28 1 -0.5551 -1.8109 -0.8556 29 1 0.9501 -5.6399 -0.0028 30 1 3.5988 -5.4294 -0.9803 31 1 5.8508 -5.9439 -0.1327 32 1 5.3773 -3.3213 3.0502 33 1 3.1137 -2.7134 2.3012 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198548159.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:37 Heat of formation + Delta-G solvation = 105.518508 kcal Electronic energy + Delta-G solvation = -20531.142951 eV Core-core repulsion = 17366.901510 eV Total energy + Delta-G solvation = -3164.241440 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.10830 -39.79108 -38.14250 -35.13435 -34.29261 -32.29453 -31.28076 -30.33661 -29.51124 -26.45705 -25.11418 -23.88720 -23.54843 -21.85470 -20.94575 -19.64230 -17.76920 -17.08371 -16.52851 -15.85007 -15.77463 -15.14399 -14.89087 -14.68351 -14.46572 -13.96724 -13.73400 -13.64966 -13.54265 -13.25375 -12.64745 -12.06185 -11.85903 -11.75411 -11.54545 -10.80647 -10.63926 -10.51148 -10.27818 -9.94909 -9.57351 -9.16620 -9.03413 -8.66970 -8.53216 -8.19987 -8.09747 -7.05784 -3.82473 0.96091 1.17878 1.95762 2.74415 3.00007 3.18405 3.22679 3.34133 3.81747 3.92084 4.07510 4.46956 4.55800 4.73197 4.77589 4.82785 4.97464 5.14583 5.26606 5.58829 5.62305 5.72828 5.82712 5.83930 6.06257 6.16873 6.41429 6.46808 6.60091 6.85252 6.94454 7.23590 7.43707 7.96271 8.01971 8.16632 8.26860 8.96486 9.15746 9.84947 10.02494 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.019956 B = 0.006564 C = 0.005184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.767574 B = 4264.397019 C = 5399.685622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.405 5.405 3 C -0.362 4.362 4 H 0.110 0.890 5 C 0.089 3.911 6 N -0.783 5.783 7 Si 0.868 3.132 8 H -0.272 1.272 9 H -0.280 1.280 10 H -0.263 1.263 11 C 0.480 3.520 12 O -0.591 6.591 13 C -0.020 4.020 14 C -0.013 4.013 15 N -0.488 5.488 16 C 0.182 3.818 17 N -0.400 5.400 18 C 0.181 3.819 19 C -0.171 4.171 20 C 0.106 3.894 21 N -0.485 5.485 22 C 0.114 3.886 23 C -0.124 4.124 24 H 0.106 0.894 25 H 0.046 0.954 26 H 0.049 0.951 27 H 0.279 0.721 28 H 0.191 0.809 29 H 0.206 0.794 30 H 0.138 0.862 31 H 0.161 0.839 32 H 0.162 0.838 33 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.662 -11.029 2.429 11.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 N -0.120 5.120 3 C -0.485 4.485 4 H 0.127 0.873 5 C -0.126 4.126 6 N -0.413 5.413 7 Si 0.690 3.310 8 H -0.197 1.197 9 H -0.205 1.205 10 H -0.187 1.187 11 C 0.271 3.729 12 O -0.479 6.479 13 C -0.134 4.134 14 C -0.163 4.163 15 N -0.205 5.205 16 C -0.098 4.098 17 N -0.082 5.082 18 C 0.081 3.919 19 C -0.192 4.192 20 C -0.051 4.051 21 N -0.194 5.194 22 C -0.043 4.043 23 C -0.145 4.145 24 H 0.124 0.876 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.089 0.911 28 H 0.208 0.792 29 H 0.222 0.778 30 H 0.156 0.844 31 H 0.178 0.822 32 H 0.179 0.821 33 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.212 -11.411 2.554 11.756 hybrid contribution -0.065 1.221 0.314 1.262 sum 1.147 -10.190 2.868 10.648 Atomic orbital electron populations 1.22730 0.82369 1.04228 1.00132 1.43225 1.05044 1.04470 1.59269 1.19117 1.00858 0.84493 1.44075 0.87286 1.25358 0.94622 0.96474 0.96149 1.70440 1.18867 1.20536 1.31432 0.86925 0.80853 0.79486 0.83688 1.19734 1.20496 1.18689 1.16207 0.86764 0.81252 0.88720 1.90672 1.13004 1.86208 1.57986 1.21590 0.95831 0.86247 1.09767 1.23340 0.94197 0.93811 1.04938 1.70077 1.26261 1.05262 1.18940 1.25021 0.83253 0.97338 1.04194 1.42599 1.09473 1.07030 1.49049 1.17807 0.84083 0.96414 0.93593 1.22050 0.95691 1.00417 1.01051 1.22560 0.92495 0.97539 0.92520 1.67641 1.36126 1.08360 1.07310 1.22619 0.89846 0.93076 0.98763 1.22091 0.97893 0.99186 0.95314 0.87567 0.93572 0.93261 0.91062 0.79249 0.77768 0.84398 0.82192 0.82068 0.84340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.03 8.24 59.85 0.49 1.52 16 2 N -0.40 -10.07 3.02 -123.72 -0.37 -10.44 16 3 C -0.36 -9.66 9.00 -15.01 -0.14 -9.80 16 4 H 0.11 3.14 7.71 -52.49 -0.40 2.73 16 5 C 0.09 2.19 4.79 -17.45 -0.08 2.10 16 6 N -0.78 -18.79 11.29 55.50 0.63 -18.16 16 7 Si 0.87 18.85 29.69 -169.99 -5.05 13.81 16 8 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 9 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 10 H -0.26 -6.00 7.11 56.52 0.40 -5.59 16 11 C 0.48 11.84 7.41 -12.89 -0.10 11.74 16 12 O -0.59 -16.07 14.46 5.16 0.07 -16.00 16 13 C -0.02 -0.41 6.47 -82.06 -0.53 -0.94 16 14 C -0.01 -0.26 9.72 -17.43 -0.17 -0.43 16 15 N -0.49 -8.68 11.20 -14.31 -0.16 -8.84 16 16 C 0.18 2.83 12.32 -90.24 -1.11 1.72 16 17 N -0.40 -7.19 2.88 -58.42 -0.17 -7.36 16 18 C 0.18 3.04 5.31 -83.39 -0.44 2.60 16 19 C -0.17 -2.35 9.87 -39.26 -0.39 -2.74 16 20 C 0.11 1.37 11.17 -17.59 -0.20 1.17 16 21 N -0.49 -7.19 10.36 -13.32 -0.14 -7.33 16 22 C 0.11 1.70 11.17 -17.59 -0.20 1.50 16 23 C -0.12 -2.09 8.17 -39.26 -0.32 -2.41 16 24 H 0.11 2.38 5.09 -51.93 -0.26 2.11 16 25 H 0.05 0.92 6.95 -51.93 -0.36 0.56 16 26 H 0.05 0.94 5.93 -51.93 -0.31 0.63 16 27 H 0.28 6.12 8.31 -40.82 -0.34 5.78 16 28 H 0.19 3.37 4.82 -52.48 -0.25 3.12 16 29 H 0.21 2.22 8.06 -52.49 -0.42 1.80 16 30 H 0.14 1.57 8.06 -52.49 -0.42 1.15 16 31 H 0.16 1.47 8.06 -52.48 -0.42 1.05 16 32 H 0.16 1.97 8.06 -52.49 -0.42 1.54 16 33 H 0.14 2.48 8.06 -52.49 -0.42 2.05 16 LS Contribution 286.97 15.07 4.32 4.32 Total: -1.00 -31.05 286.97 -6.88 -37.93 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -2.84 Total: 6.01 kcal Atomic # 6 Polarization: 9.23 SS G_CDS: -3.18 Total: 6.05 kcal Atomic # 7 Polarization: -51.91 SS G_CDS: -0.21 Total: -52.13 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: 0.07 Total: -16.00 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.05 Total: 13.81 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.05 -6.88 -37.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198548159.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.448 kcal (2) G-P(sol) polarization free energy of solvation -31.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds