Wall clock time and date at job start Mon Mar 30 2020 01:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36868 * 120.00023 * 2 1 4 4 H 1.08000 * 119.99717 * 205.05432 * 3 2 1 5 5 C 1.39019 * 120.00152 * 24.78821 * 3 2 1 6 6 N 1.31392 * 119.99305 * 304.75864 * 5 3 2 7 7 Si 1.86795 * 120.00457 * 124.75537 * 5 3 2 8 8 H 1.48504 * 109.46705 * 90.00029 * 7 5 3 9 9 H 1.48503 * 109.47139 * 209.99751 * 7 5 3 10 10 H 1.48502 * 109.47078 * 330.00225 * 7 5 3 11 11 C 1.34777 * 119.99719 * 180.02562 * 2 1 3 12 12 O 1.21735 * 120.00004 * 186.00248 * 11 2 1 13 13 C 1.46585 * 120.00300 * 6.00312 * 11 2 1 14 14 C 1.36789 * 126.86067 * 15.60192 * 13 11 2 15 15 N 1.33329 * 107.84858 * 180.02562 * 14 13 11 16 16 C 1.30851 * 109.76795 * 0.02562 * 15 14 13 17 17 N 1.34865 * 109.13738 * 359.72328 * 16 15 14 18 18 C 1.39834 * 126.51657 * 180.28950 * 17 16 15 19 19 C 1.39339 * 120.85562 * 54.25374 * 18 17 16 20 20 C 1.37991 * 119.08270 * 179.75142 * 19 18 17 21 21 N 1.31944 * 120.83251 * 0.52973 * 20 19 18 22 22 C 1.31943 * 121.88597 * 359.72484 * 21 20 19 23 23 C 1.37997 * 120.83492 * 0.02562 * 22 21 20 24 24 H 1.09000 * 109.46681 * 336.69072 * 1 2 3 25 25 H 1.08994 * 109.46939 * 96.69440 * 1 2 3 26 26 H 1.09002 * 109.46739 * 216.69805 * 1 2 3 27 27 H 0.97008 * 119.99830 * 180.02562 * 6 5 3 28 28 H 1.08003 * 126.07675 * 0.02562 * 14 13 11 29 29 H 1.07995 * 125.43104 * 180.02562 * 16 15 14 30 30 H 1.08002 * 120.46036 * 359.97438 * 19 18 17 31 31 H 1.08003 * 119.58650 * 180.25353 * 20 19 18 32 32 H 1.08000 * 119.58671 * 179.97438 * 22 21 20 33 33 H 1.07992 * 120.46453 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1494 1.1853 0.0000 4 1 3.1532 1.2293 -0.3961 5 6 1.5504 2.3338 0.5048 6 7 0.3920 2.7331 0.0305 7 14 2.3923 3.3092 1.8572 8 1 3.2759 4.3366 1.2497 9 1 1.3663 3.9744 2.6999 10 1 3.2041 2.3921 2.6970 11 6 2.1389 -1.1672 -0.0005 12 8 3.3512 -1.1702 0.1097 13 6 1.4120 -2.4332 -0.1338 14 6 0.1214 -2.5978 -0.5561 15 7 -0.1532 -3.9023 -0.5323 16 6 0.8944 -4.5675 -0.1174 17 7 1.8958 -3.7009 0.1379 18 6 3.1783 -4.0221 0.5934 19 6 3.9680 -4.9462 -0.0877 20 6 5.2301 -5.2320 0.3912 21 7 5.6864 -4.6506 1.4843 22 6 4.9672 -3.7745 2.1598 23 6 3.6972 -3.4308 1.7435 24 1 -0.3633 0.9438 0.4067 25 1 -0.3633 -0.1198 -1.0206 26 1 -0.3633 -0.8240 0.6142 27 1 -0.0259 3.5347 0.3824 28 1 -0.5551 -1.8109 -0.8556 29 1 0.9501 -5.6399 -0.0028 30 1 3.5988 -5.4294 -0.9803 31 1 5.8508 -5.9439 -0.1327 32 1 5.3773 -3.3213 3.0502 33 1 3.1137 -2.7134 2.3012 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198548159.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:36 Heat of formation + Delta-G solvation = 86.421057 kcal Electronic energy + Delta-G solvation = -20531.971078 eV Core-core repulsion = 17366.901510 eV Total energy + Delta-G solvation = -3165.069568 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.50561 -40.95245 -39.96796 -36.89414 -35.72864 -34.16832 -32.40637 -31.62845 -31.03484 -28.20529 -26.90132 -25.16878 -24.69880 -23.44647 -22.32788 -21.06133 -19.42940 -18.81911 -17.80615 -17.46343 -17.01393 -16.63587 -16.42142 -16.23935 -16.14631 -15.51672 -15.11337 -14.83058 -14.74434 -14.67561 -14.39548 -13.91945 -13.56976 -13.42077 -12.92509 -12.51224 -12.33208 -12.11066 -11.91045 -11.35238 -10.72461 -10.58379 -10.46421 -10.32321 -10.21350 -9.99734 -9.66723 -8.94045 -5.80566 -0.27643 0.05930 0.51878 1.20808 1.39538 1.43931 1.54394 1.84711 2.13470 2.29854 2.68583 2.75658 2.99079 3.45203 3.59732 3.72433 3.73197 3.87688 4.01879 4.09797 4.36028 4.45032 4.51289 4.65750 4.72639 4.74656 4.76505 5.10190 5.14214 5.37859 5.41352 5.54360 6.02865 6.15684 6.35888 6.77059 6.85083 7.06012 7.28608 7.98308 8.16525 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.019956 B = 0.006564 C = 0.005184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.767574 B = 4264.397019 C = 5399.685622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.419 5.419 3 C -0.414 4.414 4 H 0.071 0.929 5 C 0.073 3.927 6 N -0.789 5.789 7 Si 0.929 3.071 8 H -0.267 1.267 9 H -0.257 1.257 10 H -0.285 1.285 11 C 0.476 3.524 12 O -0.629 6.629 13 C -0.062 4.062 14 C 0.006 3.994 15 N -0.506 5.506 16 C 0.215 3.785 17 N -0.401 5.401 18 C 0.154 3.846 19 C -0.163 4.163 20 C 0.113 3.887 21 N -0.497 5.497 22 C 0.110 3.890 23 C -0.147 4.147 24 H 0.095 0.905 25 H 0.056 0.944 26 H 0.068 0.932 27 H 0.292 0.708 28 H 0.198 0.802 29 H 0.257 0.743 30 H 0.168 0.832 31 H 0.204 0.796 32 H 0.179 0.821 33 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.171 -12.930 2.423 13.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.134 5.134 3 C -0.537 4.537 4 H 0.089 0.911 5 C -0.143 4.143 6 N -0.418 5.418 7 Si 0.750 3.250 8 H -0.192 1.192 9 H -0.181 1.181 10 H -0.210 1.210 11 C 0.268 3.732 12 O -0.520 6.520 13 C -0.177 4.177 14 C -0.144 4.144 15 N -0.224 5.224 16 C -0.065 4.065 17 N -0.081 5.081 18 C 0.055 3.945 19 C -0.184 4.184 20 C -0.044 4.044 21 N -0.206 5.206 22 C -0.046 4.046 23 C -0.169 4.169 24 H 0.113 0.887 25 H 0.074 0.926 26 H 0.087 0.913 27 H 0.103 0.897 28 H 0.214 0.786 29 H 0.273 0.727 30 H 0.186 0.814 31 H 0.221 0.779 32 H 0.196 0.804 33 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.695 -13.282 2.551 13.542 hybrid contribution 0.093 1.643 0.274 1.668 sum 0.788 -11.638 2.826 12.002 Atomic orbital electron populations 1.22697 0.80461 1.04314 1.01019 1.43317 1.06269 1.04126 1.59725 1.18799 1.00217 0.86265 1.48447 0.91119 1.25788 0.95474 0.96739 0.96336 1.70363 1.19230 1.21043 1.31210 0.86032 0.80176 0.77920 0.80866 1.19202 1.18095 1.21044 1.16745 0.86634 0.82461 0.87391 1.90612 1.14844 1.87158 1.59381 1.21105 0.96702 0.86166 1.13678 1.23466 0.93243 0.94814 1.02924 1.70166 1.27145 1.04476 1.20565 1.26098 0.81563 0.98926 0.99899 1.42726 1.10418 1.06263 1.48716 1.18162 0.84302 0.97811 0.94203 1.22387 0.95414 0.99232 1.01342 1.23305 0.92516 0.97014 0.91568 1.67738 1.36162 1.08510 1.08197 1.22880 0.89160 0.93121 0.99442 1.22043 0.98799 0.99768 0.96278 0.88678 0.92590 0.91340 0.89687 0.78560 0.72681 0.81424 0.77943 0.80374 0.86791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.47 8.24 127.77 1.05 3.52 16 2 N -0.42 -21.71 3.02 -663.54 -2.00 -23.71 16 3 C -0.41 -23.27 9.00 84.09 0.76 -22.52 16 4 H 0.07 4.41 7.71 -2.91 -0.02 4.38 16 5 C 0.07 3.64 4.79 84.95 0.41 4.05 16 6 N -0.79 -37.86 11.29 21.68 0.24 -37.61 16 7 Si 0.93 39.50 29.69 68.60 2.04 41.53 16 8 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 9 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 10 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 11 C 0.48 24.49 7.41 86.42 0.64 25.13 16 12 O -0.63 -36.17 14.46 -4.46 -0.06 -36.24 16 13 C -0.06 -2.62 6.47 39.95 0.26 -2.36 16 14 C 0.01 0.21 9.72 84.13 0.82 1.03 16 15 N -0.51 -16.70 11.20 -199.19 -2.23 -18.93 16 16 C 0.22 6.01 12.32 180.22 2.22 8.23 16 17 N -0.40 -13.92 2.88 -338.75 -0.98 -14.89 16 18 C 0.15 5.05 5.31 38.40 0.20 5.25 16 19 C -0.16 -4.03 9.87 22.48 0.22 -3.80 16 20 C 0.11 2.58 11.17 84.62 0.95 3.52 16 21 N -0.50 -13.90 10.36 -196.07 -2.03 -15.94 16 22 C 0.11 3.29 11.17 84.62 0.95 4.23 16 23 C -0.15 -5.10 8.17 22.48 0.18 -4.92 16 24 H 0.10 4.29 5.09 -2.39 -0.01 4.27 16 25 H 0.06 2.25 6.95 -2.39 -0.02 2.23 16 26 H 0.07 2.61 5.93 -2.39 -0.01 2.60 16 27 H 0.29 12.51 8.31 -92.70 -0.77 11.74 16 28 H 0.20 6.80 4.82 -2.91 -0.01 6.79 16 29 H 0.26 4.16 8.06 -2.91 -0.02 4.14 16 30 H 0.17 3.07 8.06 -2.91 -0.02 3.04 16 31 H 0.20 2.77 8.06 -2.91 -0.02 2.74 16 32 H 0.18 4.41 8.06 -2.91 -0.02 4.39 16 33 H 0.11 4.40 8.06 -2.91 -0.02 4.37 16 Total: -1.00 -70.50 286.97 4.78 -65.72 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: 1.15 Total: 18.70 kcal Atomic # 6 Polarization: 12.71 SS G_CDS: 8.65 Total: 21.37 kcal Atomic # 7 Polarization: -104.08 SS G_CDS: -7.00 Total: -111.08 kcal Atomic # 8 Polarization: -36.17 SS G_CDS: -0.06 Total: -36.24 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 2.04 Total: 41.53 kcal Total: -70.50 4.78 -65.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198548159.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.141 kcal (2) G-P(sol) polarization free energy of solvation -70.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds