Wall clock time and date at job start Mon Mar 30 2020 01:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36884 * 119.99771 * 2 1 4 4 H 1.07999 * 120.00298 * 173.33155 * 3 2 1 5 5 C 1.39015 * 119.99751 * 353.33051 * 3 2 1 6 6 N 1.31386 * 120.00170 * 43.60114 * 5 3 2 7 7 Si 1.86801 * 119.99793 * 223.59915 * 5 3 2 8 8 H 1.48505 * 109.46983 * 90.00131 * 7 5 3 9 9 H 1.48501 * 109.47147 * 209.99952 * 7 5 3 10 10 H 1.48497 * 109.47199 * 330.00344 * 7 5 3 11 11 C 1.34775 * 120.00551 * 180.02562 * 2 1 3 12 12 O 1.21727 * 120.00324 * 180.89038 * 11 2 1 13 13 C 1.46578 * 119.99592 * 0.88733 * 11 2 1 14 14 C 1.36824 * 126.86168 * 338.99271 * 13 11 2 15 15 N 1.33309 * 107.83078 * 179.97438 * 14 13 11 16 16 C 1.30885 * 109.74878 * 0.02562 * 15 14 13 17 17 N 1.34776 * 109.15169 * 0.26595 * 16 15 14 18 18 C 1.40146 * 126.50314 * 179.73568 * 17 16 15 19 19 C 1.39264 * 120.48291 * 289.49005 * 18 17 16 20 20 C 1.38507 * 118.36003 * 179.78440 * 19 18 17 21 21 C 1.38270 * 119.23082 * 0.49550 * 20 19 18 22 22 N 1.31863 * 120.91655 * 359.74486 * 21 20 19 23 23 C 1.31819 * 121.79162 * 0.02562 * 22 21 20 24 24 H 1.08998 * 109.46757 * 246.45158 * 1 2 3 25 25 H 1.08999 * 109.47513 * 6.45303 * 1 2 3 26 26 H 1.09005 * 109.47269 * 126.45395 * 1 2 3 27 27 H 0.97002 * 120.00101 * 179.97438 * 6 5 3 28 28 H 1.07999 * 126.08895 * 359.97438 * 14 13 11 29 29 H 1.08010 * 125.42058 * 179.97438 * 16 15 14 30 30 H 1.08000 * 120.82091 * 0.02562 * 19 18 17 31 31 H 1.08001 * 120.38697 * 180.21902 * 20 19 18 32 32 H 1.08007 * 119.54593 * 179.77068 * 21 20 19 33 33 H 1.07992 * 119.66906 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1493 1.1855 0.0000 4 1 3.2238 1.1887 0.1086 5 6 1.4612 2.3853 -0.1398 6 7 0.3460 2.5844 0.5256 7 14 2.1222 3.7144 -1.2738 8 1 1.5660 3.5232 -2.6375 9 1 1.7223 5.0485 -0.7587 10 1 3.6037 3.6279 -1.3269 11 6 2.1389 -1.1671 -0.0005 12 8 3.3561 -1.1671 0.0159 13 6 1.4062 -2.4365 -0.0207 14 6 0.1057 -2.6395 0.3526 15 7 -0.1710 -3.9323 0.1820 16 6 0.8852 -4.5536 -0.2780 17 7 1.8933 -3.6697 -0.4153 18 6 3.1881 -3.9466 -0.8746 19 6 4.0728 -4.6839 -0.0917 20 6 5.3401 -4.9357 -0.5906 21 6 5.6863 -4.4420 -1.8349 22 7 4.8266 -3.7427 -2.5494 23 6 3.6095 -3.4844 -2.1139 24 1 -0.3633 -0.4106 0.9421 25 1 -0.3634 1.0211 -0.1155 26 1 -0.3634 -0.6106 -0.8266 27 1 -0.1340 3.4217 0.4283 28 1 -0.5756 -1.8864 0.7202 29 1 0.9414 -5.6078 -0.5063 30 1 3.7767 -5.0537 0.8789 31 1 6.0512 -5.5072 -0.0125 32 1 6.6745 -4.6322 -2.2272 33 1 2.9334 -2.9078 -2.7275 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199432323.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:35 Heat of formation + Delta-G solvation = 105.235706 kcal Electronic energy + Delta-G solvation = -20502.106771 eV Core-core repulsion = 17337.853068 eV Total energy + Delta-G solvation = -3164.253703 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.03639 -39.85639 -38.14959 -35.06235 -34.16363 -32.18138 -32.08551 -29.77464 -29.35070 -26.42012 -25.03953 -23.83264 -23.66716 -21.84547 -20.95649 -19.50854 -17.63318 -17.13663 -16.81135 -16.63740 -15.79732 -14.86482 -14.71119 -14.57566 -14.30165 -13.90684 -13.77599 -13.56655 -13.23190 -13.14262 -12.69083 -12.24633 -11.88976 -11.69745 -11.53652 -10.71206 -10.47845 -10.33163 -10.21907 -10.11743 -9.77508 -9.30995 -8.93047 -8.84095 -8.58257 -8.12579 -8.01147 -6.77473 -3.83612 0.90835 1.19387 1.90222 2.80517 3.05692 3.19933 3.25316 3.32462 3.71686 3.97462 4.08688 4.44654 4.64244 4.76020 4.77737 4.83493 4.87530 5.02344 5.23716 5.47044 5.63317 5.66498 5.87704 5.94762 6.01940 6.30719 6.41243 6.49100 6.52137 6.95325 7.09585 7.44068 7.47636 7.90229 7.94119 8.22792 8.31591 8.97595 9.21696 9.84578 10.24646 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.020214 B = 0.006365 C = 0.005145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.872793 B = 4397.941069 C = 5441.174333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.409 5.409 3 C -0.324 4.324 4 H 0.114 0.886 5 C 0.050 3.950 6 N -0.821 5.821 7 Si 0.903 3.097 8 H -0.273 1.273 9 H -0.283 1.283 10 H -0.264 1.264 11 C 0.483 3.517 12 O -0.595 6.595 13 C -0.020 4.020 14 C -0.013 4.013 15 N -0.490 5.490 16 C 0.181 3.819 17 N -0.397 5.397 18 C 0.085 3.915 19 C -0.058 4.058 20 C -0.165 4.165 21 C 0.104 3.896 22 N -0.472 5.472 23 C 0.139 3.861 24 H 0.046 0.954 25 H 0.130 0.870 26 H 0.039 0.961 27 H 0.276 0.724 28 H 0.192 0.808 29 H 0.204 0.796 30 H 0.138 0.862 31 H 0.141 0.859 32 H 0.160 0.840 33 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.535 -11.959 -2.733 12.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 N -0.124 5.124 3 C -0.450 4.450 4 H 0.132 0.868 5 C -0.158 4.158 6 N -0.457 5.457 7 Si 0.727 3.273 8 H -0.199 1.199 9 H -0.209 1.209 10 H -0.188 1.188 11 C 0.273 3.727 12 O -0.483 6.483 13 C -0.135 4.135 14 C -0.163 4.163 15 N -0.208 5.208 16 C -0.099 4.099 17 N -0.079 5.079 18 C -0.008 4.008 19 C -0.085 4.085 20 C -0.185 4.185 21 C -0.053 4.053 22 N -0.180 5.180 23 C -0.019 4.019 24 H 0.064 0.936 25 H 0.147 0.853 26 H 0.057 0.943 27 H 0.087 0.913 28 H 0.208 0.792 29 H 0.221 0.779 30 H 0.156 0.844 31 H 0.159 0.841 32 H 0.178 0.822 33 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 2.574 -11.842 -3.363 12.577 hybrid contribution 0.540 0.673 0.401 0.951 sum 3.113 -11.169 -2.963 11.968 Atomic orbital electron populations 1.22907 0.81376 1.07582 0.98234 1.43400 1.05644 1.04393 1.58949 1.19646 0.93977 0.81588 1.49804 0.86847 1.25244 0.95782 0.98509 0.96235 1.70099 1.18374 1.25786 1.31397 0.86310 0.80539 0.78909 0.81499 1.19868 1.20930 1.18844 1.16274 0.86650 0.81511 0.88307 1.90659 1.12771 1.86438 1.58397 1.21563 0.95582 0.87296 1.09034 1.23436 0.94072 0.93809 1.04982 1.70095 1.26255 1.06555 1.17857 1.24995 0.82949 0.97092 1.04872 1.42516 1.08629 1.08293 1.48447 1.18540 0.84939 1.01905 0.95384 1.21589 0.92689 0.95610 0.98642 1.22018 0.96404 1.02398 0.97666 1.22873 0.98843 0.92331 0.91251 1.67764 1.02155 1.12626 1.35479 1.22776 0.92804 0.94294 0.92067 0.93560 0.85303 0.94271 0.91346 0.79156 0.77926 0.84401 0.84087 0.82248 0.82652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.93 8.22 59.84 0.49 1.42 16 2 N -0.41 -10.44 3.02 -123.73 -0.37 -10.81 16 3 C -0.32 -8.82 9.32 -15.01 -0.14 -8.96 16 4 H 0.11 3.31 7.40 -52.49 -0.39 2.92 16 5 C 0.05 1.26 4.79 -17.45 -0.08 1.18 16 6 N -0.82 -20.33 10.84 55.50 0.60 -19.73 16 7 Si 0.90 19.53 29.69 -169.99 -5.05 14.48 16 8 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 9 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 10 H -0.26 -5.85 7.11 56.52 0.40 -5.45 16 11 C 0.48 12.20 7.53 -12.90 -0.10 12.10 16 12 O -0.59 -16.67 15.46 5.16 0.08 -16.59 16 13 C -0.02 -0.42 6.59 -82.08 -0.54 -0.96 16 14 C -0.01 -0.26 9.87 -17.42 -0.17 -0.43 16 15 N -0.49 -8.83 11.20 -14.32 -0.16 -8.99 16 16 C 0.18 2.85 12.47 -90.30 -1.13 1.72 16 17 N -0.40 -7.17 2.82 -58.51 -0.17 -7.33 16 18 C 0.08 1.43 4.71 -83.46 -0.39 1.04 16 19 C -0.06 -0.81 10.11 -39.10 -0.40 -1.21 16 20 C -0.16 -1.91 10.10 -39.47 -0.40 -2.31 16 21 C 0.10 1.32 11.18 -17.53 -0.20 1.12 16 22 N -0.47 -7.60 10.35 -13.09 -0.14 -7.73 16 23 C 0.14 2.40 10.93 -17.34 -0.19 2.21 16 24 H 0.05 0.95 6.01 -51.93 -0.31 0.64 16 25 H 0.13 3.01 4.52 -51.93 -0.23 2.77 16 26 H 0.04 0.78 7.03 -51.93 -0.36 0.41 16 27 H 0.28 6.30 8.31 -40.82 -0.34 5.96 16 28 H 0.19 3.49 4.70 -52.49 -0.25 3.24 16 29 H 0.20 2.24 8.06 -52.48 -0.42 1.82 16 30 H 0.14 1.69 8.06 -52.49 -0.42 1.27 16 31 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 32 H 0.16 1.43 8.06 -52.48 -0.42 1.01 16 33 H 0.16 2.71 8.06 -52.49 -0.42 2.29 16 LS Contribution 288.78 15.07 4.35 4.35 Total: -1.00 -32.00 288.78 -6.88 -38.89 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -2.80 Total: 6.56 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: -3.24 Total: 6.92 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: -0.23 Total: -54.60 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: 0.08 Total: -16.59 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.05 Total: 14.48 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -32.00 -6.88 -38.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199432323.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.122 kcal (2) G-P(sol) polarization free energy of solvation -32.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds