Wall clock time and date at job start Mon Mar 30 2020 01:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36884 * 119.99771 * 2 1 4 4 H 1.07999 * 120.00298 * 173.33155 * 3 2 1 5 5 C 1.39015 * 119.99751 * 353.33051 * 3 2 1 6 6 N 1.31386 * 120.00170 * 43.60114 * 5 3 2 7 7 Si 1.86801 * 119.99793 * 223.59915 * 5 3 2 8 8 H 1.48505 * 109.46983 * 90.00131 * 7 5 3 9 9 H 1.48501 * 109.47147 * 209.99952 * 7 5 3 10 10 H 1.48497 * 109.47199 * 330.00344 * 7 5 3 11 11 C 1.34775 * 120.00551 * 180.02562 * 2 1 3 12 12 O 1.21727 * 120.00324 * 180.89038 * 11 2 1 13 13 C 1.46578 * 119.99592 * 0.88733 * 11 2 1 14 14 C 1.36824 * 126.86168 * 338.99271 * 13 11 2 15 15 N 1.33309 * 107.83078 * 179.97438 * 14 13 11 16 16 C 1.30885 * 109.74878 * 0.02562 * 15 14 13 17 17 N 1.34776 * 109.15169 * 0.26595 * 16 15 14 18 18 C 1.40146 * 126.50314 * 179.73568 * 17 16 15 19 19 C 1.39264 * 120.48291 * 289.49005 * 18 17 16 20 20 C 1.38507 * 118.36003 * 179.78440 * 19 18 17 21 21 C 1.38270 * 119.23082 * 0.49550 * 20 19 18 22 22 N 1.31863 * 120.91655 * 359.74486 * 21 20 19 23 23 C 1.31819 * 121.79162 * 0.02562 * 22 21 20 24 24 H 1.08998 * 109.46757 * 246.45158 * 1 2 3 25 25 H 1.08999 * 109.47513 * 6.45303 * 1 2 3 26 26 H 1.09005 * 109.47269 * 126.45395 * 1 2 3 27 27 H 0.97002 * 120.00101 * 179.97438 * 6 5 3 28 28 H 1.07999 * 126.08895 * 359.97438 * 14 13 11 29 29 H 1.08010 * 125.42058 * 179.97438 * 16 15 14 30 30 H 1.08000 * 120.82091 * 0.02562 * 19 18 17 31 31 H 1.08001 * 120.38697 * 180.21902 * 20 19 18 32 32 H 1.08007 * 119.54593 * 179.77068 * 21 20 19 33 33 H 1.07992 * 119.66906 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1493 1.1855 0.0000 4 1 3.2238 1.1887 0.1086 5 6 1.4612 2.3853 -0.1398 6 7 0.3460 2.5844 0.5256 7 14 2.1222 3.7144 -1.2738 8 1 1.5660 3.5232 -2.6375 9 1 1.7223 5.0485 -0.7587 10 1 3.6037 3.6279 -1.3269 11 6 2.1389 -1.1671 -0.0005 12 8 3.3561 -1.1671 0.0159 13 6 1.4062 -2.4365 -0.0207 14 6 0.1057 -2.6395 0.3526 15 7 -0.1710 -3.9323 0.1820 16 6 0.8852 -4.5536 -0.2780 17 7 1.8933 -3.6697 -0.4153 18 6 3.1881 -3.9466 -0.8746 19 6 4.0728 -4.6839 -0.0917 20 6 5.3401 -4.9357 -0.5906 21 6 5.6863 -4.4420 -1.8349 22 7 4.8266 -3.7427 -2.5494 23 6 3.6095 -3.4844 -2.1139 24 1 -0.3633 -0.4106 0.9421 25 1 -0.3634 1.0211 -0.1155 26 1 -0.3634 -0.6106 -0.8266 27 1 -0.1340 3.4217 0.4283 28 1 -0.5756 -1.8864 0.7202 29 1 0.9414 -5.6078 -0.5063 30 1 3.7767 -5.0537 0.8789 31 1 6.0512 -5.5072 -0.0125 32 1 6.6745 -4.6322 -2.2272 33 1 2.9334 -2.9078 -2.7275 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199432323.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:34 Heat of formation + Delta-G solvation = 85.090763 kcal Electronic energy + Delta-G solvation = -20502.980321 eV Core-core repulsion = 17337.853068 eV Total energy + Delta-G solvation = -3165.127254 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.44397 -40.99878 -40.01925 -36.92308 -35.54880 -34.02718 -33.24408 -31.20173 -30.73802 -28.21884 -26.87512 -25.04908 -24.80589 -23.46406 -22.37302 -20.96233 -19.33238 -18.77933 -18.05344 -17.82939 -17.53352 -16.65420 -16.21870 -16.18468 -15.80134 -15.35287 -15.07251 -14.79913 -14.71027 -14.50094 -14.25492 -13.79751 -13.52264 -13.48582 -13.18673 -12.44410 -12.23424 -12.11985 -11.71260 -11.44789 -10.90635 -10.79347 -10.51212 -10.48603 -10.07651 -9.94347 -9.63534 -8.69621 -5.85943 -0.22617 0.11261 0.40992 1.30505 1.40255 1.46310 1.55965 1.86285 2.19799 2.28520 2.61737 2.82521 3.01104 3.38015 3.61986 3.68256 3.78609 3.82988 3.98755 4.09255 4.37853 4.40929 4.57916 4.58396 4.79236 4.84671 4.93854 5.03239 5.20721 5.39380 5.50298 5.55055 5.95710 6.19154 6.35543 6.79686 6.81335 7.02436 7.29562 7.93313 8.33637 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.020214 B = 0.006365 C = 0.005145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.872793 B = 4397.941069 C = 5441.174333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.423 5.423 3 C -0.375 4.375 4 H 0.078 0.922 5 C 0.032 3.968 6 N -0.830 5.830 7 Si 0.966 3.034 8 H -0.266 1.266 9 H -0.264 1.264 10 H -0.278 1.278 11 C 0.478 3.522 12 O -0.636 6.636 13 C -0.062 4.062 14 C 0.004 3.996 15 N -0.508 5.508 16 C 0.214 3.786 17 N -0.395 5.395 18 C 0.059 3.941 19 C -0.064 4.064 20 C -0.146 4.146 21 C 0.101 3.899 22 N -0.498 5.498 23 C 0.114 3.886 24 H 0.059 0.941 25 H 0.118 0.882 26 H 0.055 0.945 27 H 0.288 0.712 28 H 0.197 0.803 29 H 0.254 0.746 30 H 0.157 0.843 31 H 0.189 0.811 32 H 0.200 0.800 33 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.692 -13.657 -2.738 14.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.138 5.138 3 C -0.501 4.501 4 H 0.096 0.904 5 C -0.177 4.177 6 N -0.465 5.465 7 Si 0.788 3.212 8 H -0.191 1.191 9 H -0.189 1.189 10 H -0.202 1.202 11 C 0.268 3.732 12 O -0.527 6.527 13 C -0.176 4.176 14 C -0.147 4.147 15 N -0.226 5.226 16 C -0.067 4.067 17 N -0.076 5.076 18 C -0.034 4.034 19 C -0.091 4.091 20 C -0.165 4.165 21 C -0.056 4.056 22 N -0.207 5.207 23 C -0.044 4.044 24 H 0.077 0.923 25 H 0.136 0.864 26 H 0.074 0.926 27 H 0.099 0.901 28 H 0.213 0.787 29 H 0.270 0.730 30 H 0.174 0.826 31 H 0.206 0.794 32 H 0.216 0.784 33 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.690 -13.523 -3.364 14.193 hybrid contribution 0.546 1.052 0.421 1.257 sum 3.236 -12.472 -2.944 13.217 Atomic orbital electron populations 1.22880 0.79630 1.07198 0.99542 1.43541 1.06817 1.04166 1.59247 1.19396 0.92872 0.83382 1.54417 0.90448 1.25856 0.96159 0.99673 0.96001 1.70077 1.18735 1.26857 1.30801 0.85401 0.79043 0.77123 0.79600 1.19137 1.18903 1.20248 1.16811 0.86487 0.82754 0.87102 1.90592 1.14666 1.87405 1.60027 1.21056 0.96369 0.87229 1.12993 1.23515 0.93157 0.94703 1.03285 1.70174 1.27161 1.05769 1.19454 1.26022 0.81357 0.98440 1.00853 1.42613 1.09654 1.07429 1.47862 1.18752 0.85164 1.03578 0.95865 1.21935 0.93114 0.95015 0.99024 1.22531 0.95961 1.00907 0.97138 1.23637 0.99616 0.90769 0.91551 1.67737 1.02152 1.13917 1.36856 1.22566 0.93504 0.95506 0.92778 0.92317 0.86427 0.92633 0.90128 0.78656 0.72996 0.82570 0.79418 0.78365 0.84825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.23 8.22 127.77 1.05 3.28 16 2 N -0.42 -22.53 3.02 -663.57 -2.00 -24.54 16 3 C -0.37 -21.45 9.32 84.09 0.78 -20.66 16 4 H 0.08 4.87 7.40 -2.91 -0.02 4.85 16 5 C 0.03 1.61 4.79 84.95 0.41 2.01 16 6 N -0.83 -41.15 10.84 21.68 0.24 -40.92 16 7 Si 0.97 40.59 29.69 68.60 2.04 42.62 16 8 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 9 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 10 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 11 C 0.48 25.25 7.53 86.42 0.65 25.90 16 12 O -0.64 -37.68 15.46 -4.43 -0.07 -37.75 16 13 C -0.06 -2.67 6.59 39.96 0.26 -2.41 16 14 C 0.00 0.15 9.87 84.14 0.83 0.99 16 15 N -0.51 -17.34 11.20 -199.21 -2.23 -19.57 16 16 C 0.21 6.21 12.47 180.23 2.25 8.45 16 17 N -0.40 -14.05 2.82 -339.04 -0.96 -15.01 16 18 C 0.06 1.96 4.71 38.20 0.18 2.14 16 19 C -0.06 -1.65 10.11 22.58 0.23 -1.43 16 20 C -0.15 -2.89 10.10 22.34 0.23 -2.66 16 21 C 0.10 2.32 11.18 84.70 0.95 3.27 16 22 N -0.50 -15.97 10.35 -195.34 -2.02 -17.99 16 23 C 0.11 4.06 10.93 84.83 0.93 4.98 16 24 H 0.06 2.43 6.01 -2.39 -0.01 2.41 16 25 H 0.12 5.55 4.52 -2.39 -0.01 5.54 16 26 H 0.06 2.24 7.03 -2.38 -0.02 2.22 16 27 H 0.29 12.87 8.31 -92.71 -0.77 12.10 16 28 H 0.20 7.08 4.70 -2.91 -0.01 7.07 16 29 H 0.25 4.47 8.06 -2.91 -0.02 4.45 16 30 H 0.16 3.37 8.06 -2.91 -0.02 3.34 16 31 H 0.19 1.94 8.06 -2.91 -0.02 1.92 16 32 H 0.20 2.82 8.06 -2.91 -0.02 2.79 16 33 H 0.13 5.09 8.06 -2.91 -0.02 5.06 16 Total: -1.00 -73.63 288.78 4.89 -68.74 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: 1.16 Total: 20.56 kcal Atomic # 6 Polarization: 15.12 SS G_CDS: 8.74 Total: 23.86 kcal Atomic # 7 Polarization: -111.05 SS G_CDS: -6.98 Total: -118.03 kcal Atomic # 8 Polarization: -37.68 SS G_CDS: -0.07 Total: -37.75 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 2.04 Total: 42.62 kcal Total: -73.63 4.89 -68.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199432323.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.832 kcal (2) G-P(sol) polarization free energy of solvation -73.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds