Wall clock time and date at job start Mon Mar 30 2020 01:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31819 * 119.67361 * 2 1 4 4 C 1.31859 * 121.80487 * 180.33250 * 3 2 1 5 5 C 1.38279 * 120.92845 * 359.65619 * 4 3 2 6 6 C 1.38491 * 119.24284 * 0.02562 * 5 4 3 7 7 C 1.38905 * 119.67734 * 179.70578 * 2 1 3 8 8 N 1.39731 * 120.49086 * 359.97438 * 7 2 1 9 9 C 1.39805 * 120.00069 * 187.27949 * 8 7 2 10 10 C 1.39429 * 119.91940 * 41.74606 * 9 8 7 11 11 C 1.38357 * 120.46473 * 179.97438 * 10 9 8 12 12 C 1.38007 * 120.29044 * 0.02562 * 11 10 9 13 13 F 1.35106 * 120.08763 * 179.97438 * 12 11 10 14 14 C 1.41016 * 119.82538 * 359.97438 * 12 11 10 15 15 C 1.41296 * 120.22934 * 179.72211 * 14 12 11 16 16 H 1.08007 * 119.99674 * 330.65977 * 15 14 12 17 17 C 1.39911 * 120.00334 * 150.66061 * 15 14 12 18 18 N 1.30859 * 119.99654 * 350.85517 * 17 15 14 19 19 Si 1.86799 * 120.00392 * 170.86110 * 17 15 14 20 20 H 1.48499 * 109.47059 * 59.99423 * 19 17 15 21 21 H 1.48489 * 109.47389 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46824 * 299.99899 * 19 17 15 23 23 C 1.38189 * 119.91243 * 221.75153 * 9 8 7 24 24 H 1.08994 * 109.47293 * 270.29716 * 1 2 3 25 25 H 1.09001 * 109.47006 * 30.30084 * 1 2 3 26 26 H 1.09000 * 109.46366 * 150.29181 * 1 2 3 27 27 H 1.07998 * 119.53552 * 179.67790 * 4 3 2 28 28 H 1.08003 * 120.37854 * 180.02562 * 5 4 3 29 29 H 1.08008 * 120.81813 * 180.02562 * 6 5 4 30 30 H 0.97003 * 119.99962 * 7.27215 * 8 7 2 31 31 H 1.08006 * 119.76557 * 0.03083 * 10 9 8 32 32 H 1.08003 * 119.85043 * 179.97438 * 11 10 9 33 33 H 0.97003 * 120.00108 * 180.02562 * 18 17 15 34 34 H 1.07999 * 120.15103 * 0.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1596 1.1453 0.0000 4 6 3.4772 1.1944 -0.0065 5 6 4.2316 0.0355 -0.0065 6 6 3.5879 -1.1908 -0.0001 7 6 2.1947 -1.2068 0.0062 8 7 1.4996 -2.4190 0.0130 9 6 2.1938 -3.6220 0.1725 10 6 3.2274 -3.7102 1.1042 11 6 3.9214 -4.8953 1.2718 12 6 3.5978 -6.0043 0.5168 13 9 4.2786 -7.1593 0.6835 14 6 2.5546 -5.9287 -0.4290 15 6 2.2200 -7.0572 -1.2106 16 1 2.9776 -7.7857 -1.4594 17 6 0.9073 -7.2310 -1.6625 18 7 -0.0461 -6.4526 -1.2179 19 14 0.5155 -8.5741 -2.9002 20 1 0.8756 -9.8958 -2.3269 21 1 -0.9356 -8.5500 -3.2141 22 1 1.2952 -8.3446 -4.1430 23 6 1.8538 -4.7206 -0.5936 24 1 -0.3633 0.0053 1.0276 25 1 -0.3633 0.8873 -0.5185 26 1 -0.3632 -0.8926 -0.5093 27 1 3.9743 2.1532 -0.0115 28 1 5.3104 0.0860 -0.0115 29 1 4.1520 -2.1118 0.0004 30 1 0.5354 -2.4257 -0.0930 31 1 3.4874 -2.8476 1.6999 32 1 4.7206 -4.9524 1.9961 33 1 -0.9563 -6.5733 -1.5308 34 1 1.0535 -4.6518 -1.3156 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205429900.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:48 Heat of formation + Delta-G solvation = 6.044478 kcal Electronic energy + Delta-G solvation = -19876.601873 eV Core-core repulsion = 16688.126954 eV Total energy + Delta-G solvation = -3188.474919 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -47.32271 -40.19933 -37.95526 -35.29953 -33.68741 -32.71677 -30.61394 -29.92580 -27.82300 -26.94134 -25.53809 -22.76906 -22.12729 -21.19775 -20.37732 -17.70533 -17.43614 -16.33993 -16.12192 -15.67573 -15.37598 -14.73030 -14.65261 -14.23173 -14.10178 -13.52107 -13.13045 -12.87469 -12.76147 -12.39611 -12.14022 -12.09533 -11.85542 -11.65535 -11.55033 -11.33171 -11.13233 -10.83665 -10.42393 -10.20786 -9.74306 -9.42275 -9.24565 -9.08600 -7.96317 -7.70755 -7.00145 -6.58507 -4.61805 1.46602 1.67596 2.51265 2.62678 2.97566 3.00946 3.04923 3.79678 3.80638 4.12661 4.40145 4.64620 5.02819 5.15306 5.26961 5.43183 5.62886 5.72764 5.74721 5.76673 5.78070 5.95681 6.19373 6.27145 6.37602 6.55283 6.65576 6.72318 6.87768 7.00117 7.07589 7.33803 7.45711 7.63771 7.79444 8.02556 8.12789 8.32913 8.40395 8.58273 8.64803 10.00021 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.021596 B = 0.005314 C = 0.004517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.253545 B = 5267.451350 C = 6197.770132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.047 3.953 3 N -0.453 5.453 4 C 0.029 3.971 5 C -0.134 4.134 6 C -0.147 4.147 7 C 0.174 3.826 8 N -0.669 5.669 9 C 0.152 3.848 10 C -0.239 4.239 11 C -0.106 4.106 12 C -0.033 4.033 13 F -0.162 7.162 14 C 0.102 3.898 15 C -0.450 4.450 16 H 0.084 0.916 17 C 0.074 3.926 18 N -0.797 5.797 19 Si 0.918 3.082 20 H -0.263 1.263 21 H -0.277 1.277 22 H -0.262 1.262 23 C -0.161 4.161 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.066 0.934 27 H 0.146 0.854 28 H 0.129 0.871 29 H 0.149 0.851 30 H 0.406 0.594 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.284 0.716 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.162 8.048 0.436 8.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.096 4.096 3 N -0.162 5.162 4 C -0.130 4.130 5 C -0.154 4.154 6 C -0.177 4.177 7 C 0.068 3.932 8 N -0.290 5.290 9 C 0.058 3.942 10 C -0.261 4.261 11 C -0.126 4.126 12 C -0.054 4.054 13 F -0.141 7.141 14 C 0.098 3.902 15 C -0.479 4.479 16 H 0.102 0.898 17 C -0.144 4.144 18 N -0.422 5.422 19 Si 0.742 3.258 20 H -0.188 1.188 21 H -0.202 1.202 22 H -0.187 1.187 23 C -0.183 4.183 24 H 0.090 0.910 25 H 0.093 0.907 26 H 0.085 0.915 27 H 0.164 0.836 28 H 0.147 0.853 29 H 0.167 0.833 30 H 0.244 0.756 31 H 0.122 0.878 32 H 0.124 0.876 33 H 0.095 0.905 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.520 8.687 0.441 8.714 hybrid contribution 0.054 -1.597 -0.432 1.656 sum 0.575 7.090 0.009 7.113 Atomic orbital electron populations 1.20510 0.89438 1.02722 1.02521 1.20694 0.96461 0.86932 1.05542 1.67252 1.10281 1.28125 1.10526 1.22291 0.89293 0.98006 1.03430 1.21898 1.00862 0.92805 0.99878 1.21653 0.92807 0.99680 1.03540 1.18716 0.92415 0.86814 0.95290 1.42251 1.08841 1.01663 1.76272 1.17575 0.95196 0.85020 0.96386 1.20117 1.03575 0.97797 1.04598 1.20338 1.00303 0.92278 0.99697 1.17926 1.01342 0.82252 1.03842 1.91283 1.79178 1.48450 1.95189 1.17415 0.89550 0.93202 0.90064 1.19498 0.95073 1.06161 1.27174 0.89819 1.25911 0.95837 0.97144 0.95473 1.69752 1.01948 1.34920 1.35625 0.86190 0.77924 0.80971 0.80726 1.18766 1.20151 1.18675 1.21073 1.05095 0.90613 1.01480 0.91015 0.90698 0.91520 0.83618 0.85325 0.83312 0.75638 0.87786 0.87634 0.90547 0.84927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.21 9.80 36.01 0.35 -0.86 16 2 C 0.05 0.75 6.80 -82.35 -0.56 0.19 16 3 N -0.45 -7.21 10.27 -9.30 -0.10 -7.31 16 4 C 0.03 0.41 11.18 -17.52 -0.20 0.21 16 5 C -0.13 -1.87 10.10 -39.47 -0.40 -2.27 16 6 C -0.15 -2.43 8.14 -39.08 -0.32 -2.75 16 7 C 0.17 2.97 6.41 -83.61 -0.54 2.43 16 8 N -0.67 -12.03 5.39 -8.34 -0.04 -12.07 16 9 C 0.15 3.20 5.88 -83.80 -0.49 2.71 16 10 C -0.24 -4.90 7.40 -39.09 -0.29 -5.19 16 11 C -0.11 -2.28 10.00 -39.62 -0.40 -2.67 16 12 C -0.03 -0.80 7.31 -38.61 -0.28 -1.08 16 13 F -0.16 -3.94 16.76 2.25 0.04 -3.90 16 14 C 0.10 2.59 5.55 -106.78 -0.59 1.99 16 15 C -0.45 -11.53 8.75 -37.79 -0.33 -11.86 16 16 H 0.08 2.12 7.77 -52.48 -0.41 1.71 16 17 C 0.07 1.77 5.28 -17.34 -0.09 1.67 16 18 N -0.80 -19.20 10.81 55.55 0.60 -18.60 16 19 Si 0.92 17.99 29.57 -169.99 -5.03 12.97 16 20 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 21 H -0.28 -5.24 7.11 56.52 0.40 -4.84 16 22 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 23 C -0.16 -3.81 8.57 -38.70 -0.33 -4.14 16 24 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.07 0.80 6.45 -51.93 -0.34 0.46 16 27 H 0.15 1.60 8.06 -52.49 -0.42 1.17 16 28 H 0.13 1.42 8.06 -52.48 -0.42 0.99 16 29 H 0.15 2.59 5.49 -52.48 -0.29 2.30 16 30 H 0.41 6.66 6.81 -40.82 -0.28 6.38 16 31 H 0.10 1.97 6.64 -52.48 -0.35 1.62 16 32 H 0.11 1.99 8.06 -52.48 -0.42 1.56 16 33 H 0.28 6.22 8.30 -40.82 -0.34 5.89 16 34 H 0.13 3.24 6.21 -52.49 -0.33 2.91 16 LS Contribution 293.41 15.07 4.42 4.42 Total: -1.00 -26.73 293.41 -7.80 -34.53 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -3.23 Total: 11.59 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: -4.46 Total: -21.62 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: 0.46 Total: -37.98 kcal Atomic # 9 Polarization: -3.94 SS G_CDS: 0.04 Total: -3.90 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.03 Total: 12.97 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -26.73 -7.80 -34.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205429900.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.572 kcal (2) G-P(sol) polarization free energy of solvation -26.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds