Wall clock time and date at job start Mon Mar 30 2020 01:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31819 * 119.67361 * 2 1 4 4 C 1.31859 * 121.80487 * 180.33250 * 3 2 1 5 5 C 1.38279 * 120.92845 * 359.65619 * 4 3 2 6 6 C 1.38491 * 119.24284 * 0.02562 * 5 4 3 7 7 C 1.38905 * 119.67734 * 179.70578 * 2 1 3 8 8 N 1.39731 * 120.49086 * 359.97438 * 7 2 1 9 9 C 1.39805 * 120.00069 * 187.27949 * 8 7 2 10 10 C 1.39429 * 119.91940 * 41.74606 * 9 8 7 11 11 C 1.38357 * 120.46473 * 179.97438 * 10 9 8 12 12 C 1.38007 * 120.29044 * 0.02562 * 11 10 9 13 13 F 1.35106 * 120.08763 * 179.97438 * 12 11 10 14 14 C 1.41016 * 119.82538 * 359.97438 * 12 11 10 15 15 C 1.41296 * 120.22934 * 179.72211 * 14 12 11 16 16 H 1.08007 * 119.99674 * 330.65977 * 15 14 12 17 17 C 1.39911 * 120.00334 * 150.66061 * 15 14 12 18 18 N 1.30859 * 119.99654 * 350.85517 * 17 15 14 19 19 Si 1.86799 * 120.00392 * 170.86110 * 17 15 14 20 20 H 1.48499 * 109.47059 * 59.99423 * 19 17 15 21 21 H 1.48489 * 109.47389 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46824 * 299.99899 * 19 17 15 23 23 C 1.38189 * 119.91243 * 221.75153 * 9 8 7 24 24 H 1.08994 * 109.47293 * 270.29716 * 1 2 3 25 25 H 1.09001 * 109.47006 * 30.30084 * 1 2 3 26 26 H 1.09000 * 109.46366 * 150.29181 * 1 2 3 27 27 H 1.07998 * 119.53552 * 179.67790 * 4 3 2 28 28 H 1.08003 * 120.37854 * 180.02562 * 5 4 3 29 29 H 1.08008 * 120.81813 * 180.02562 * 6 5 4 30 30 H 0.97003 * 119.99962 * 7.27215 * 8 7 2 31 31 H 1.08006 * 119.76557 * 0.03083 * 10 9 8 32 32 H 1.08003 * 119.85043 * 179.97438 * 11 10 9 33 33 H 0.97003 * 120.00108 * 180.02562 * 18 17 15 34 34 H 1.07999 * 120.15103 * 0.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1596 1.1453 0.0000 4 6 3.4772 1.1944 -0.0065 5 6 4.2316 0.0355 -0.0065 6 6 3.5879 -1.1908 -0.0001 7 6 2.1947 -1.2068 0.0062 8 7 1.4996 -2.4190 0.0130 9 6 2.1938 -3.6220 0.1725 10 6 3.2274 -3.7102 1.1042 11 6 3.9214 -4.8953 1.2718 12 6 3.5978 -6.0043 0.5168 13 9 4.2786 -7.1593 0.6835 14 6 2.5546 -5.9287 -0.4290 15 6 2.2200 -7.0572 -1.2106 16 1 2.9776 -7.7857 -1.4594 17 6 0.9073 -7.2310 -1.6625 18 7 -0.0461 -6.4526 -1.2179 19 14 0.5155 -8.5741 -2.9002 20 1 0.8756 -9.8958 -2.3269 21 1 -0.9356 -8.5500 -3.2141 22 1 1.2952 -8.3446 -4.1430 23 6 1.8538 -4.7206 -0.5936 24 1 -0.3633 0.0053 1.0276 25 1 -0.3633 0.8873 -0.5185 26 1 -0.3632 -0.8926 -0.5093 27 1 3.9743 2.1532 -0.0115 28 1 5.3104 0.0860 -0.0115 29 1 4.1520 -2.1118 0.0004 30 1 0.5354 -2.4257 -0.0930 31 1 3.4874 -2.8476 1.6999 32 1 4.7206 -4.9524 1.9961 33 1 -0.9563 -6.5733 -1.5308 34 1 1.0535 -4.6518 -1.3156 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205429900.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:47 Heat of formation + Delta-G solvation = -7.467543 kcal Electronic energy + Delta-G solvation = -19877.187798 eV Core-core repulsion = 16688.126954 eV Total energy + Delta-G solvation = -3189.060845 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.18977 -41.46604 -39.55714 -36.83355 -35.37596 -33.89876 -31.99627 -31.69437 -29.25572 -28.19826 -27.32507 -24.12531 -23.63748 -22.60647 -22.01855 -19.41763 -18.78570 -18.04186 -17.69959 -17.09262 -16.81443 -16.28736 -16.14685 -15.97782 -15.49006 -14.81022 -14.60852 -14.47043 -14.22514 -13.89094 -13.59811 -13.40627 -13.24055 -13.15237 -12.91177 -12.78587 -12.65855 -12.49125 -12.08801 -11.80891 -11.46857 -11.16498 -10.44267 -10.30790 -9.53666 -9.46209 -8.74211 -8.11695 -6.50355 0.25723 0.38210 0.81705 0.91353 1.36876 1.47488 1.48352 2.17454 2.38976 2.60917 2.96807 3.42952 3.56951 3.87047 4.00427 4.03272 4.25313 4.29068 4.49348 4.57638 4.67388 4.71382 4.76399 4.93511 5.00306 5.12686 5.17673 5.20084 5.32212 5.36691 5.59789 5.69505 5.80513 5.96010 5.98911 6.29072 6.62543 6.68033 6.75123 6.86898 7.16389 8.25129 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.021596 B = 0.005314 C = 0.004517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.253545 B = 5267.451350 C = 6197.770132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.044 3.956 3 N -0.470 5.470 4 C 0.035 3.965 5 C -0.128 4.128 6 C -0.162 4.162 7 C 0.149 3.851 8 N -0.670 5.670 9 C 0.166 3.834 10 C -0.228 4.228 11 C -0.099 4.099 12 C -0.067 4.067 13 F -0.170 7.170 14 C 0.075 3.925 15 C -0.491 4.491 16 H 0.072 0.928 17 C 0.038 3.962 18 N -0.820 5.820 19 Si 0.985 3.015 20 H -0.264 1.264 21 H -0.262 1.262 22 H -0.260 1.260 23 C -0.179 4.179 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.070 0.930 27 H 0.181 0.819 28 H 0.162 0.838 29 H 0.137 0.863 30 H 0.411 0.589 31 H 0.126 0.874 32 H 0.134 0.866 33 H 0.292 0.708 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.384 9.917 0.590 10.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.098 4.098 3 N -0.179 5.179 4 C -0.124 4.124 5 C -0.148 4.148 6 C -0.191 4.191 7 C 0.045 3.955 8 N -0.293 5.293 9 C 0.071 3.929 10 C -0.249 4.249 11 C -0.118 4.118 12 C -0.088 4.088 13 F -0.149 7.149 14 C 0.072 3.928 15 C -0.520 4.520 16 H 0.090 0.910 17 C -0.177 4.177 18 N -0.446 5.446 19 Si 0.805 3.195 20 H -0.188 1.188 21 H -0.186 1.186 22 H -0.184 1.184 23 C -0.202 4.202 24 H 0.100 0.900 25 H 0.103 0.897 26 H 0.089 0.911 27 H 0.198 0.802 28 H 0.179 0.821 29 H 0.155 0.845 30 H 0.250 0.750 31 H 0.144 0.856 32 H 0.152 0.848 33 H 0.103 0.897 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.741 10.609 0.606 10.652 hybrid contribution 0.075 -1.923 -0.409 1.967 sum 0.817 8.686 0.197 8.727 Atomic orbital electron populations 1.20580 0.87782 1.03415 1.03401 1.21063 0.97767 0.86487 1.04494 1.67370 1.11346 1.27944 1.11267 1.22952 0.88871 0.99567 1.01017 1.22233 1.02577 0.91641 0.98374 1.21748 0.92731 1.00402 1.04242 1.18885 0.92852 0.86636 0.97122 1.42107 1.09011 1.01093 1.77091 1.17591 0.94755 0.85433 0.95098 1.20362 1.02659 0.98033 1.03839 1.20636 1.00575 0.91448 0.99169 1.18218 1.02230 0.83081 1.05252 1.91244 1.79309 1.49012 1.95325 1.17749 0.90500 0.93900 0.90694 1.19657 0.96034 1.06838 1.29482 0.91021 1.26663 0.95044 0.99264 0.96719 1.69787 1.02421 1.36065 1.36314 0.85202 0.78313 0.77839 0.78144 1.18840 1.18584 1.18425 1.20973 1.05440 0.91296 1.02442 0.89978 0.89720 0.91090 0.80191 0.82079 0.84520 0.75018 0.85595 0.84815 0.89748 0.86261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.26 9.80 71.24 0.70 -1.56 16 2 C 0.04 1.32 6.80 42.72 0.29 1.61 16 3 N -0.47 -13.69 10.27 -183.34 -1.88 -15.57 16 4 C 0.03 0.86 11.18 84.70 0.95 1.80 16 5 C -0.13 -3.16 10.10 22.34 0.23 -2.93 16 6 C -0.16 -5.02 8.14 22.59 0.18 -4.84 16 7 C 0.15 4.88 6.41 38.30 0.25 5.12 16 8 N -0.67 -23.74 5.39 -180.31 -0.97 -24.71 16 9 C 0.17 7.01 5.88 38.14 0.22 7.23 16 10 C -0.23 -9.07 7.40 22.59 0.17 -8.91 16 11 C -0.10 -4.17 10.00 22.24 0.22 -3.95 16 12 C -0.07 -3.35 7.31 22.90 0.17 -3.18 16 13 F -0.17 -8.52 16.76 44.97 0.75 -7.76 16 14 C 0.08 3.98 5.55 -21.26 -0.12 3.86 16 15 C -0.49 -26.30 8.75 23.43 0.20 -26.10 16 16 H 0.07 3.84 7.77 -2.91 -0.02 3.82 16 17 C 0.04 1.88 5.28 85.24 0.45 2.33 16 18 N -0.82 -40.44 10.81 21.82 0.24 -40.21 16 19 Si 0.98 37.40 29.57 68.60 2.03 39.43 16 20 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 21 H -0.26 -9.22 7.11 99.48 0.71 -8.51 16 22 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 23 C -0.18 -8.76 8.57 22.84 0.20 -8.56 16 24 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.07 1.62 6.45 -2.39 -0.02 1.60 16 27 H 0.18 3.09 8.06 -2.91 -0.02 3.07 16 28 H 0.16 2.86 8.06 -2.91 -0.02 2.84 16 29 H 0.14 4.56 5.49 -2.91 -0.02 4.54 16 30 H 0.41 13.39 6.81 -92.71 -0.63 12.76 16 31 H 0.13 4.47 6.64 -2.91 -0.02 4.46 16 32 H 0.13 4.79 8.06 -2.91 -0.02 4.76 16 33 H 0.29 12.94 8.30 -92.71 -0.77 12.18 16 34 H 0.12 6.06 6.21 -2.91 -0.02 6.05 16 Total: -1.00 -58.74 293.41 4.79 -53.96 By element: Atomic # 1 Polarization: 32.41 SS G_CDS: 0.52 Total: 32.93 kcal Atomic # 6 Polarization: -42.17 SS G_CDS: 4.10 Total: -38.06 kcal Atomic # 7 Polarization: -77.87 SS G_CDS: -2.62 Total: -80.48 kcal Atomic # 9 Polarization: -8.52 SS G_CDS: 0.75 Total: -7.76 kcal Atomic # 14 Polarization: 37.40 SS G_CDS: 2.03 Total: 39.43 kcal Total: -58.74 4.79 -53.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205429900.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.489 kcal (2) G-P(sol) polarization free energy of solvation -58.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds