Wall clock time and date at job start Mon Mar 30 2020 01:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 O 1.20828 * 120.00389 * 2 1 4 4 O 1.34235 * 120.00035 * 180.02562 * 2 1 3 5 5 C 1.45201 * 117.00365 * 180.02562 * 4 2 1 6 6 H 1.09002 * 110.43029 * 332.53145 * 5 4 2 7 7 C 1.54425 * 110.59172 * 95.13316 * 5 4 2 8 8 O 1.44339 * 104.79787 * 143.26775 * 7 5 4 9 9 C 1.44245 * 105.57204 * 319.41659 * 8 7 5 10 10 H 1.08998 * 112.68085 * 276.83866 * 9 8 7 11 11 C 1.54361 * 108.69432 * 150.50220 * 9 8 7 12 12 H 1.08998 * 110.48689 * 129.24508 * 11 9 8 13 13 O 1.42902 * 110.48361 * 6.61252 * 11 9 8 14 14 C 1.42897 * 114.00213 * 150.00378 * 13 11 9 15 15 C 1.50699 * 109.47393 * 179.97438 * 14 13 11 16 16 H 1.08001 * 120.00009 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00027 * 179.97438 * 15 14 13 18 18 N 1.31519 * 120.00105 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99972 * 180.02562 * 17 15 14 20 20 H 1.48508 * 109.47193 * 359.97438 * 19 17 15 21 21 H 1.48491 * 109.47281 * 120.00104 * 19 17 15 22 22 H 1.48504 * 109.47177 * 240.00210 * 19 17 15 23 23 C 1.54431 * 104.21574 * 247.93011 * 11 9 8 24 24 O 1.45109 * 105.22378 * 24.14019 * 23 11 9 25 25 C 1.44239 * 105.17334 * 320.25017 * 24 23 11 26 26 H 1.09002 * 112.67864 * 275.64370 * 25 24 23 27 27 H 1.09000 * 109.47559 * 240.00310 * 1 2 3 28 28 H 1.09006 * 109.46854 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.47461 * 119.99426 * 1 2 3 30 30 H 1.08996 * 110.37235 * 262.09387 * 7 5 4 31 31 H 1.08998 * 110.37099 * 24.43661 * 7 5 4 32 32 H 1.09001 * 109.46869 * 299.99934 * 14 13 11 33 33 H 1.09005 * 109.47184 * 59.99725 * 14 13 11 34 34 H 0.97001 * 119.99697 * 179.97438 * 18 17 15 35 35 H 1.09005 * 110.37083 * 143.35620 * 23 11 9 36 36 H 1.08997 * 110.36994 * 265.58022 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1111 1.0464 0.0000 4 8 2.1781 -1.1625 -0.0005 5 6 3.6281 -1.0866 0.0001 6 1 3.9609 -0.1613 -0.4703 7 6 4.1767 -1.1883 1.4400 8 8 5.3950 -1.9526 1.3173 9 6 5.1026 -2.9974 0.3667 10 1 4.6079 -3.8546 0.8234 11 6 6.4040 -3.3698 -0.3751 12 1 6.5610 -4.4481 -0.3522 13 8 7.5203 -2.6884 0.2007 14 6 8.7539 -3.4020 0.0961 15 6 9.8566 -2.5951 0.7318 16 1 9.6374 -1.6333 1.1713 17 6 11.1453 -3.0848 0.7522 18 7 11.4124 -4.2558 0.2165 19 14 12.5120 -2.0849 1.5408 20 1 11.9545 -0.8128 2.0665 21 1 13.1129 -2.8605 2.6553 22 1 13.5550 -1.7860 0.5269 23 6 6.1659 -2.8891 -1.8233 24 8 5.1679 -1.8409 -1.7176 25 6 4.2332 -2.3084 -0.7235 26 1 3.4732 -2.9699 -1.1393 27 1 -0.3634 -0.5138 0.8900 28 1 -0.3633 1.0277 0.0005 29 1 -0.3634 -0.5137 -0.8900 30 1 4.3899 -0.1954 1.8359 31 1 3.4653 -1.7087 2.0812 32 1 8.6636 -4.3605 0.6072 33 1 8.9877 -3.5714 -0.9550 34 1 12.3191 -4.6001 0.2306 35 1 7.0889 -2.4956 -2.2491 36 1 5.7839 -3.7056 -2.4361 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205622038.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:46 Heat of formation + Delta-G solvation = -207.092538 kcal Electronic energy + Delta-G solvation = -21507.715557 eV Core-core repulsion = 17958.023863 eV Total energy + Delta-G solvation = -3549.691694 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.118 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.07162 -39.99258 -37.21720 -36.38857 -36.12023 -32.74666 -31.38169 -30.20320 -29.77055 -27.52315 -26.94632 -23.26276 -22.62697 -21.83175 -21.17470 -20.65908 -18.12630 -17.28401 -16.88846 -16.47240 -16.12057 -15.81427 -15.59419 -15.43653 -14.64593 -14.47436 -14.14545 -13.71310 -13.57033 -13.21609 -13.07998 -12.92917 -12.75053 -12.31235 -12.02019 -11.66717 -11.36666 -11.08197 -10.91404 -10.83542 -10.80282 -10.71768 -10.59335 -10.05745 -9.81807 -9.62045 -9.10978 -8.81945 -8.17916 -6.11506 -4.12327 1.93620 2.32911 3.30623 3.37086 3.44683 3.56765 3.99635 4.24750 4.35385 4.43267 4.60195 4.68619 4.75435 4.88383 4.90808 4.96094 5.06278 5.22846 5.25432 5.30468 5.39581 5.51551 5.58949 5.65088 5.78803 5.85531 6.14579 6.27147 6.61670 6.90269 7.04625 7.37020 7.48232 7.81187 8.13236 8.52835 9.01521 9.52509 11.00164 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.035945 B = 0.003937 C = 0.003745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.786449 B = 7111.069278 C = 7475.507610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.457 3.543 3 O -0.508 6.508 4 O -0.348 6.348 5 C 0.056 3.944 6 H 0.115 0.885 7 C 0.032 3.968 8 O -0.315 6.315 9 C 0.047 3.953 10 H 0.101 0.899 11 C 0.061 3.939 12 H 0.079 0.921 13 O -0.354 6.354 14 C 0.189 3.811 15 C -0.511 4.511 16 H 0.069 0.931 17 C 0.056 3.944 18 N -0.900 5.900 19 Si 0.908 3.092 20 H -0.270 1.270 21 H -0.282 1.282 22 H -0.283 1.283 23 C 0.025 3.975 24 O -0.356 6.356 25 C 0.049 3.951 26 H 0.104 0.896 27 H 0.100 0.900 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.069 0.931 32 H 0.007 0.993 33 H 0.006 0.994 34 H 0.263 0.737 35 H 0.108 0.892 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.027 1.802 -1.587 22.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.300 3.700 3 O -0.395 6.395 4 O -0.265 6.265 5 C 0.001 3.999 6 H 0.133 0.867 7 C -0.046 4.046 8 O -0.232 6.232 9 C -0.012 4.012 10 H 0.119 0.881 11 C 0.001 3.999 12 H 0.097 0.903 13 O -0.273 6.273 14 C 0.115 3.885 15 C -0.549 4.549 16 H 0.087 0.913 17 C -0.145 4.145 18 N -0.540 5.540 19 Si 0.735 3.265 20 H -0.194 1.194 21 H -0.208 1.208 22 H -0.209 1.209 23 C -0.052 4.052 24 O -0.275 6.275 25 C -0.010 4.010 26 H 0.122 0.878 27 H 0.119 0.881 28 H 0.120 0.880 29 H 0.119 0.881 30 H 0.122 0.878 31 H 0.087 0.913 32 H 0.024 0.976 33 H 0.023 0.977 34 H 0.073 0.927 35 H 0.126 0.874 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -21.447 2.419 -1.533 21.637 hybrid contribution 0.711 -0.064 0.155 0.730 sum -20.736 2.355 -1.379 20.915 Atomic orbital electron populations 1.21642 0.86822 1.05986 1.05784 1.23914 0.92203 0.81745 0.72160 1.90723 1.70793 1.32963 1.44998 1.86504 1.21407 1.34929 1.83677 1.24239 0.76127 1.01523 0.98042 0.86685 1.23781 0.88254 0.98487 0.94039 1.89495 1.29756 1.42042 1.61938 1.24521 0.95332 0.92139 0.89166 0.88111 1.23255 0.88416 0.97178 0.91087 0.90282 1.88126 1.15932 1.45041 1.78219 1.20366 0.79911 0.92271 0.95923 1.21080 0.91469 1.05168 1.37167 0.91315 1.24942 0.98640 0.95295 0.95642 1.69970 1.20684 1.18091 1.45219 0.86273 0.81157 0.80168 0.78884 1.19401 1.20850 1.20857 1.24276 0.92926 0.90515 0.97457 1.89276 1.37839 1.42035 1.58361 1.24137 0.92859 0.94127 0.89867 0.87817 0.88119 0.88014 0.88142 0.87809 0.91263 0.97557 0.97668 0.92727 0.87395 0.91608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 10.43 36.00 0.38 -0.40 16 2 C 0.46 4.94 8.06 36.00 0.29 5.23 16 3 O -0.51 -7.45 16.29 -18.75 -0.31 -7.76 16 4 O -0.35 -4.04 9.93 -39.27 -0.39 -4.43 16 5 C 0.06 0.79 3.23 -25.27 -0.08 0.71 16 6 H 0.12 1.87 6.94 -51.93 -0.36 1.51 16 7 C 0.03 0.46 7.39 37.90 0.28 0.74 16 8 O -0.31 -5.87 10.27 -57.00 -0.59 -6.45 16 9 C 0.05 0.74 4.48 -24.67 -0.11 0.63 16 10 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 11 C 0.06 1.12 3.59 -25.27 -0.09 1.03 16 12 H 0.08 1.32 7.82 -51.93 -0.41 0.92 16 13 O -0.35 -8.70 9.04 -57.00 -0.52 -9.22 16 14 C 0.19 5.16 5.53 36.01 0.20 5.35 16 15 C -0.51 -15.22 9.43 -34.44 -0.32 -15.54 16 16 H 0.07 2.08 7.81 -52.49 -0.41 1.67 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -26.87 13.29 55.43 0.74 -26.13 16 19 Si 0.91 22.16 29.54 -169.99 -5.02 17.14 16 20 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 C 0.02 0.41 7.38 37.91 0.28 0.69 16 24 O -0.36 -6.13 11.20 -35.23 -0.39 -6.52 16 25 C 0.05 0.69 4.20 -24.68 -0.10 0.59 16 26 H 0.10 1.18 8.08 -51.93 -0.42 0.76 16 27 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.10 0.47 8.12 -51.93 -0.42 0.05 16 29 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.10 1.45 8.14 -51.93 -0.42 1.02 16 31 H 0.07 0.82 8.09 -51.93 -0.42 0.40 16 32 H 0.01 0.19 8.11 -51.93 -0.42 -0.24 16 33 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 34 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.11 1.93 8.09 -51.93 -0.42 1.51 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 310.28 15.07 4.68 4.68 Total: -1.00 -35.34 310.28 -6.13 -41.48 By element: Atomic # 1 Polarization: 1.62 SS G_CDS: -4.95 Total: -3.33 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: 0.62 Total: 0.56 kcal Atomic # 7 Polarization: -26.87 SS G_CDS: 0.74 Total: -26.13 kcal Atomic # 8 Polarization: -32.19 SS G_CDS: -2.19 Total: -34.38 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -35.34 -6.13 -41.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205622038.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.616 kcal (2) G-P(sol) polarization free energy of solvation -35.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds