Wall clock time and date at job start Mon Mar 30 2020 01:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 O 1.20828 * 120.00389 * 2 1 4 4 O 1.34235 * 120.00035 * 180.02562 * 2 1 3 5 5 C 1.45201 * 117.00365 * 180.02562 * 4 2 1 6 6 H 1.09002 * 110.43029 * 332.53145 * 5 4 2 7 7 C 1.54425 * 110.59172 * 95.13316 * 5 4 2 8 8 O 1.44339 * 104.79787 * 143.26775 * 7 5 4 9 9 C 1.44245 * 105.57204 * 319.41659 * 8 7 5 10 10 H 1.08998 * 112.68085 * 276.83866 * 9 8 7 11 11 C 1.54361 * 108.69432 * 150.50220 * 9 8 7 12 12 H 1.08998 * 110.48689 * 129.24508 * 11 9 8 13 13 O 1.42902 * 110.48361 * 6.61252 * 11 9 8 14 14 C 1.42897 * 114.00213 * 150.00378 * 13 11 9 15 15 C 1.50699 * 109.47393 * 179.97438 * 14 13 11 16 16 H 1.08001 * 120.00009 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00027 * 179.97438 * 15 14 13 18 18 N 1.31519 * 120.00105 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99972 * 180.02562 * 17 15 14 20 20 H 1.48508 * 109.47193 * 359.97438 * 19 17 15 21 21 H 1.48491 * 109.47281 * 120.00104 * 19 17 15 22 22 H 1.48504 * 109.47177 * 240.00210 * 19 17 15 23 23 C 1.54431 * 104.21574 * 247.93011 * 11 9 8 24 24 O 1.45109 * 105.22378 * 24.14019 * 23 11 9 25 25 C 1.44239 * 105.17334 * 320.25017 * 24 23 11 26 26 H 1.09002 * 112.67864 * 275.64370 * 25 24 23 27 27 H 1.09000 * 109.47559 * 240.00310 * 1 2 3 28 28 H 1.09006 * 109.46854 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.47461 * 119.99426 * 1 2 3 30 30 H 1.08996 * 110.37235 * 262.09387 * 7 5 4 31 31 H 1.08998 * 110.37099 * 24.43661 * 7 5 4 32 32 H 1.09001 * 109.46869 * 299.99934 * 14 13 11 33 33 H 1.09005 * 109.47184 * 59.99725 * 14 13 11 34 34 H 0.97001 * 119.99697 * 179.97438 * 18 17 15 35 35 H 1.09005 * 110.37083 * 143.35620 * 23 11 9 36 36 H 1.08997 * 110.36994 * 265.58022 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1111 1.0464 0.0000 4 8 2.1781 -1.1625 -0.0005 5 6 3.6281 -1.0866 0.0001 6 1 3.9609 -0.1613 -0.4703 7 6 4.1767 -1.1883 1.4400 8 8 5.3950 -1.9526 1.3173 9 6 5.1026 -2.9974 0.3667 10 1 4.6079 -3.8546 0.8234 11 6 6.4040 -3.3698 -0.3751 12 1 6.5610 -4.4481 -0.3522 13 8 7.5203 -2.6884 0.2007 14 6 8.7539 -3.4020 0.0961 15 6 9.8566 -2.5951 0.7318 16 1 9.6374 -1.6333 1.1713 17 6 11.1453 -3.0848 0.7522 18 7 11.4124 -4.2558 0.2165 19 14 12.5120 -2.0849 1.5408 20 1 11.9545 -0.8128 2.0665 21 1 13.1129 -2.8605 2.6553 22 1 13.5550 -1.7860 0.5269 23 6 6.1659 -2.8891 -1.8233 24 8 5.1679 -1.8409 -1.7176 25 6 4.2332 -2.3084 -0.7235 26 1 3.4732 -2.9699 -1.1393 27 1 -0.3634 -0.5138 0.8900 28 1 -0.3633 1.0277 0.0005 29 1 -0.3634 -0.5137 -0.8900 30 1 4.3899 -0.1954 1.8359 31 1 3.4653 -1.7087 2.0812 32 1 8.6636 -4.3605 0.6072 33 1 8.9877 -3.5714 -0.9550 34 1 12.3191 -4.6001 0.2306 35 1 7.0889 -2.4956 -2.2491 36 1 5.7839 -3.7056 -2.4361 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205622038.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:46 Heat of formation + Delta-G solvation = -232.881605 kcal Electronic energy + Delta-G solvation = -21508.833855 eV Core-core repulsion = 17958.023863 eV Total energy + Delta-G solvation = -3550.809992 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.118 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.16660 -41.09833 -38.61314 -37.73427 -37.45749 -34.93334 -32.39207 -31.59274 -30.58451 -29.20778 -28.60220 -24.76210 -24.28324 -23.06735 -22.40267 -21.80543 -19.12275 -18.79179 -18.39520 -17.74741 -17.39088 -17.31826 -16.80202 -16.72165 -16.42228 -15.87828 -15.38164 -15.11115 -15.06383 -14.80379 -14.08265 -13.82239 -13.76013 -13.45705 -13.20469 -13.11673 -13.02507 -12.74754 -12.59312 -12.41726 -12.20484 -12.01799 -11.82630 -11.68595 -11.32191 -11.19640 -10.84614 -10.77495 -10.12794 -8.34282 -6.45276 1.09868 1.38029 1.38968 1.43243 1.54022 2.31004 2.38375 2.79183 2.99388 3.07323 3.23827 3.40595 3.48405 3.74920 3.77803 3.88129 4.06161 4.16977 4.29217 4.37753 4.45769 4.49742 4.56115 4.60250 4.60988 4.75238 4.82732 4.96632 5.17319 5.39511 5.41055 5.53002 5.74862 5.96447 6.52470 6.61421 6.81975 7.26357 8.77932 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.035945 B = 0.003937 C = 0.003745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.786449 B = 7111.069278 C = 7475.507610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.452 3.548 3 O -0.554 6.554 4 O -0.337 6.337 5 C 0.060 3.940 6 H 0.085 0.915 7 C 0.033 3.967 8 O -0.360 6.360 9 C 0.048 3.952 10 H 0.140 0.860 11 C 0.040 3.960 12 H 0.096 0.904 13 O -0.380 6.380 14 C 0.207 3.793 15 C -0.548 4.548 16 H 0.053 0.947 17 C 0.010 3.990 18 N -0.927 5.927 19 Si 0.979 3.021 20 H -0.270 1.270 21 H -0.268 1.268 22 H -0.270 1.270 23 C 0.030 3.970 24 O -0.382 6.382 25 C 0.054 3.946 26 H 0.144 0.856 27 H 0.127 0.873 28 H 0.108 0.892 29 H 0.124 0.876 30 H 0.096 0.904 31 H 0.099 0.901 32 H -0.008 1.008 33 H -0.008 1.008 34 H 0.271 0.729 35 H 0.083 0.917 36 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.774 1.115 -1.366 23.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.297 3.703 3 O -0.444 6.444 4 O -0.253 6.253 5 C 0.004 3.996 6 H 0.103 0.897 7 C -0.045 4.045 8 O -0.279 6.279 9 C -0.010 4.010 10 H 0.157 0.843 11 C -0.019 4.019 12 H 0.113 0.887 13 O -0.299 6.299 14 C 0.132 3.868 15 C -0.586 4.586 16 H 0.072 0.928 17 C -0.189 4.189 18 N -0.566 5.566 19 Si 0.802 3.198 20 H -0.195 1.195 21 H -0.193 1.193 22 H -0.195 1.195 23 C -0.047 4.047 24 O -0.301 6.301 25 C -0.004 4.004 26 H 0.161 0.839 27 H 0.145 0.855 28 H 0.127 0.873 29 H 0.142 0.858 30 H 0.114 0.886 31 H 0.117 0.883 32 H 0.009 0.991 33 H 0.010 0.990 34 H 0.080 0.920 35 H 0.101 0.899 36 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -23.234 1.715 -1.323 23.335 hybrid contribution 1.135 0.147 0.065 1.146 sum -22.099 1.862 -1.258 22.213 Atomic orbital electron populations 1.21820 0.82051 1.07282 1.08064 1.25161 0.94082 0.80687 0.70321 1.90718 1.72010 1.34429 1.47280 1.86538 1.19647 1.35484 1.83663 1.23937 0.77843 1.00262 0.97583 0.89666 1.23891 0.87584 0.98210 0.94770 1.89437 1.32288 1.43382 1.62764 1.24799 0.94038 0.92927 0.89260 0.84256 1.23751 0.87594 0.97899 0.92695 0.88651 1.88060 1.16484 1.46025 1.79349 1.19942 0.81036 0.91361 0.94431 1.21376 0.93301 1.05269 1.38651 0.92847 1.25872 1.00921 0.96400 0.95671 1.70048 1.21809 1.19283 1.45457 0.85195 0.77747 0.78444 0.78381 1.19461 1.19349 1.19464 1.24241 0.92415 0.91370 0.96628 1.89250 1.38546 1.43070 1.59253 1.24372 0.92729 0.94374 0.88896 0.83868 0.85502 0.87326 0.85751 0.88568 0.88256 0.99066 0.99008 0.91961 0.89908 0.87284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 10.43 71.23 0.74 -0.26 16 2 C 0.45 9.07 8.06 71.23 0.57 9.64 16 3 O -0.55 -16.35 16.29 21.96 0.36 -16.00 16 4 O -0.34 -7.08 9.93 -51.46 -0.51 -7.59 16 5 C 0.06 1.65 3.23 31.54 0.10 1.75 16 6 H 0.09 2.87 6.94 -2.39 -0.02 2.86 16 7 C 0.03 0.92 7.39 72.47 0.54 1.45 16 8 O -0.36 -13.49 10.27 -128.17 -1.32 -14.80 16 9 C 0.05 1.43 4.48 31.93 0.14 1.58 16 10 H 0.14 3.06 8.14 -2.39 -0.02 3.04 16 11 C 0.04 1.46 3.59 31.54 0.11 1.57 16 12 H 0.10 3.13 7.82 -2.39 -0.02 3.11 16 13 O -0.38 -19.34 9.04 -128.17 -1.16 -20.50 16 14 C 0.21 11.71 5.53 71.24 0.39 12.11 16 15 C -0.55 -33.71 9.43 25.60 0.24 -33.47 16 16 H 0.05 3.35 7.81 -2.91 -0.02 3.33 16 17 C 0.01 0.59 5.46 84.65 0.46 1.05 16 18 N -0.93 -55.69 13.29 21.45 0.28 -55.41 16 19 Si 0.98 45.61 29.54 68.60 2.03 47.64 16 20 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 21 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 22 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 23 C 0.03 0.97 7.38 72.47 0.53 1.50 16 24 O -0.38 -12.99 11.20 -148.98 -1.67 -14.66 16 25 C 0.05 1.44 4.20 31.93 0.13 1.57 16 26 H 0.14 2.69 8.08 -2.39 -0.02 2.67 16 27 H 0.13 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.11 0.71 8.12 -2.38 -0.02 0.69 16 29 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.10 2.77 8.14 -2.39 -0.02 2.76 16 31 H 0.10 2.16 8.09 -2.39 -0.02 2.14 16 32 H -0.01 -0.49 8.11 -2.39 -0.02 -0.50 16 33 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 34 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 35 H 0.08 3.08 8.09 -2.38 -0.02 3.06 16 36 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -79.86 310.28 3.07 -76.79 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: 1.08 Total: 6.04 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: 3.98 Total: -1.51 kcal Atomic # 7 Polarization: -55.69 SS G_CDS: 0.28 Total: -55.41 kcal Atomic # 8 Polarization: -69.25 SS G_CDS: -4.30 Total: -73.55 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -79.86 3.07 -76.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205622038.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.093 kcal (2) G-P(sol) polarization free energy of solvation -79.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -235.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -232.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds