Wall clock time and date at job start Mon Mar 30 2020 01:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38177 * 120.35186 * 2 1 4 4 N 1.31952 * 120.96429 * 180.02562 * 3 2 1 5 5 C 1.31933 * 121.76952 * 0.02562 * 4 3 2 6 6 F 1.35102 * 119.70391 * 179.97438 * 5 4 3 7 7 C 1.39261 * 120.59447 * 0.02562 * 5 4 3 8 8 N 1.39738 * 120.50267 * 179.97438 * 7 5 4 9 9 C 1.38770 * 120.00161 * 73.70130 * 8 7 5 10 10 C 1.39623 * 119.84388 * 7.85474 * 9 8 7 11 11 C 1.36309 * 120.15004 * 179.76376 * 10 9 8 12 12 C 1.40901 * 119.84569 * 0.50900 * 11 10 9 13 13 C 1.41097 * 120.15525 * 179.72403 * 12 11 10 14 14 H 1.07998 * 120.00033 * 205.60357 * 13 12 11 15 15 C 1.39844 * 119.99877 * 25.60201 * 13 12 11 16 16 N 1.30922 * 120.00200 * 14.50133 * 15 13 12 17 17 Si 1.86799 * 119.99972 * 194.50159 * 15 13 12 18 18 H 1.48501 * 109.47248 * 60.00025 * 17 15 13 19 19 H 1.48504 * 109.47262 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47106 * 300.00085 * 17 15 13 21 21 C 1.40905 * 119.69376 * 359.74181 * 12 11 10 22 22 C 1.36304 * 119.84085 * 0.02562 * 21 12 11 23 23 C 1.38596 * 120.34827 * 179.72610 * 2 1 3 24 24 H 1.09003 * 109.46933 * 89.99586 * 1 2 3 25 25 H 1.08998 * 109.46990 * 209.99767 * 1 2 3 26 26 H 1.08998 * 109.46918 * 329.99987 * 1 2 3 27 27 H 1.07997 * 119.51460 * 0.02858 * 3 2 1 28 28 H 0.96996 * 119.99409 * 253.70085 * 8 7 5 29 29 H 1.08000 * 119.92304 * 359.97438 * 10 9 8 30 30 H 1.08007 * 120.07160 * 180.25330 * 11 10 9 31 31 H 0.96997 * 120.00089 * 179.97438 * 16 15 13 32 32 H 1.08002 * 120.08151 * 179.97438 * 21 12 11 33 33 H 1.08004 * 119.91889 * 179.97438 * 22 21 12 34 34 H 1.07996 * 120.80666 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2053 1.1924 0.0000 4 7 3.5247 1.2065 -0.0005 5 6 4.2313 0.0923 -0.0015 6 9 5.5808 0.1554 -0.0025 7 6 3.5986 -1.1483 -0.0027 8 7 4.3488 -2.3271 -0.0043 9 6 5.0064 -2.7327 1.1485 10 6 4.7861 -2.0549 2.3491 11 6 5.4250 -2.4510 3.4861 12 6 6.3176 -3.5404 3.4457 13 6 6.9869 -3.9523 4.6175 14 1 7.9327 -4.4688 4.5460 15 6 6.4256 -3.6917 5.8716 16 7 5.1707 -3.3303 5.9648 17 14 7.4663 -3.8591 7.4137 18 1 8.6197 -2.9269 7.3362 19 1 6.6430 -3.5291 8.6048 20 1 7.9638 -5.2538 7.5262 21 6 6.5391 -4.2165 2.2294 22 6 5.8899 -3.8127 1.1010 23 6 2.2073 -1.1960 0.0057 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6631 2.1264 0.0005 28 1 4.4100 -2.8619 -0.8112 29 1 4.1053 -1.2170 2.3776 30 1 5.2505 -1.9283 4.4151 31 1 4.7813 -3.1499 6.8346 32 1 7.2223 -5.0521 2.1911 33 1 6.0590 -4.3298 0.1679 34 1 1.6863 -2.1420 0.0098 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211502086.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:02 Heat of formation + Delta-G solvation = 16.521309 kcal Electronic energy + Delta-G solvation = -19784.439461 eV Core-core repulsion = 16596.418851 eV Total energy + Delta-G solvation = -3188.020610 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.57261 -40.17074 -37.97788 -35.42816 -33.53508 -33.19508 -30.43339 -29.54198 -28.21248 -27.03298 -24.73344 -23.52004 -21.99664 -21.14511 -20.12254 -17.79352 -17.33167 -17.28539 -16.59326 -16.16134 -15.46691 -15.02603 -14.56564 -13.93016 -13.85833 -13.58662 -13.29478 -12.95753 -12.76730 -12.49484 -12.42233 -12.29490 -12.08548 -11.86666 -11.42339 -11.09021 -11.02963 -10.62974 -9.95549 -9.77582 -9.70494 -9.37110 -9.31978 -8.81808 -8.46651 -7.57808 -6.72289 -6.55598 -4.15491 0.97580 1.18365 2.84691 3.04182 3.11336 3.14395 3.26527 3.59439 3.72535 4.00009 4.03803 4.63535 4.70142 4.76005 4.90492 5.00747 5.42624 5.57813 5.62911 5.74056 5.87819 6.06842 6.11669 6.16434 6.21148 6.53209 6.83502 6.92778 7.10708 7.26618 7.44946 7.59972 7.70702 7.75622 8.07179 8.17753 8.36712 8.46910 8.68409 8.97697 9.04435 10.30607 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.024546 B = 0.004646 C = 0.004404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.452140 B = 6025.434677 C = 6356.254269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.143 4.143 3 C 0.115 3.885 4 N -0.507 5.507 5 C 0.290 3.710 6 F -0.104 7.104 7 C 0.118 3.882 8 N -0.703 5.703 9 C 0.069 3.931 10 C -0.146 4.146 11 C -0.126 4.126 12 C 0.084 3.916 13 C -0.463 4.463 14 H 0.075 0.925 15 C 0.073 3.927 16 N -0.807 5.807 17 Si 0.908 3.092 18 H -0.265 1.265 19 H -0.280 1.280 20 H -0.267 1.267 21 C -0.192 4.192 22 C -0.139 4.139 23 C -0.068 4.068 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.162 0.838 28 H 0.399 0.601 29 H 0.081 0.919 30 H 0.123 0.877 31 H 0.278 0.722 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.665 4.877 -9.464 13.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.146 4.146 3 C -0.042 4.042 4 N -0.221 5.221 5 C 0.134 3.866 6 F -0.083 7.083 7 C 0.019 3.981 8 N -0.335 5.335 9 C -0.025 4.025 10 C -0.167 4.167 11 C -0.146 4.146 12 C 0.081 3.919 13 C -0.493 4.493 14 H 0.093 0.907 15 C -0.143 4.143 16 N -0.434 5.434 17 Si 0.732 3.268 18 H -0.190 1.190 19 H -0.205 1.205 20 H -0.192 1.192 21 C -0.212 4.212 22 C -0.161 4.161 23 C -0.096 4.096 24 H 0.091 0.909 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.179 0.821 28 H 0.235 0.765 29 H 0.099 0.901 30 H 0.140 0.860 31 H 0.089 0.911 32 H 0.113 0.887 33 H 0.108 0.892 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -8.342 5.798 -9.162 13.680 hybrid contribution 0.273 -1.006 0.513 1.162 sum -8.069 4.792 -8.650 12.763 Atomic orbital electron populations 1.20685 0.89781 1.03372 1.02481 1.20864 0.97831 0.93405 1.02510 1.22286 0.87544 0.97839 0.96519 1.66951 1.09449 1.30466 1.15246 1.18912 0.79100 0.89643 0.98966 1.91634 1.26917 1.96818 1.92931 1.18145 0.90890 0.86883 1.02168 1.41106 1.56582 1.23103 1.12750 1.17263 1.00166 0.99879 0.85211 1.20060 1.03364 1.00798 0.92475 1.20982 0.99593 0.97461 0.96562 1.17548 0.91929 0.90317 0.92089 1.19396 1.06209 1.33593 0.90128 0.90730 1.25840 0.94607 0.92939 1.00865 1.69828 1.11699 1.35275 1.26555 0.86383 0.80591 0.79691 0.80086 1.18979 1.20479 1.19152 1.20550 1.05179 1.01909 0.93589 1.19791 0.99934 0.98699 0.97672 1.21848 0.92518 0.98919 0.96298 0.90941 0.91120 0.91050 0.82051 0.76509 0.90092 0.85963 0.91109 0.88687 0.89197 0.83873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 10.04 36.01 0.36 -0.46 16 2 C -0.14 -1.65 5.89 -104.51 -0.62 -2.27 16 3 C 0.12 1.45 10.85 -17.52 -0.19 1.26 16 4 N -0.51 -8.35 10.36 -13.42 -0.14 -8.48 16 5 C 0.29 5.24 7.89 -17.13 -0.14 5.10 16 6 F -0.10 -2.10 17.08 2.25 0.04 -2.06 16 7 C 0.12 1.98 4.58 -83.51 -0.38 1.59 16 8 N -0.70 -12.49 5.23 -8.15 -0.04 -12.53 16 9 C 0.07 1.51 6.57 -83.69 -0.55 0.96 16 10 C -0.15 -3.53 9.09 -39.76 -0.36 -3.89 16 11 C -0.13 -3.36 8.62 -39.27 -0.34 -3.70 16 12 C 0.08 2.27 5.57 -106.80 -0.60 1.68 16 13 C -0.46 -12.49 9.04 -37.90 -0.34 -12.84 16 14 H 0.07 1.93 7.89 -52.49 -0.41 1.52 16 15 C 0.07 1.88 5.20 -17.34 -0.09 1.79 16 16 N -0.81 -21.34 10.82 55.54 0.60 -20.74 16 17 Si 0.91 19.17 29.58 -169.99 -5.03 14.14 16 18 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 19 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 20 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 21 C -0.19 -4.71 9.74 -39.27 -0.38 -5.09 16 22 C -0.14 -3.09 9.83 -39.76 -0.39 -3.48 16 23 C -0.07 -0.93 9.79 -39.09 -0.38 -1.31 16 24 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 26 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 27 H 0.16 1.45 8.06 -52.49 -0.42 1.02 16 28 H 0.40 6.01 8.83 -40.82 -0.36 5.65 16 29 H 0.08 1.91 6.76 -52.49 -0.35 1.55 16 30 H 0.12 3.40 6.10 -52.48 -0.32 3.08 16 31 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 32 H 0.09 2.18 8.06 -52.49 -0.42 1.76 16 33 H 0.09 1.71 8.06 -52.48 -0.42 1.29 16 34 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 301.52 15.07 4.54 4.54 Total: -1.00 -29.74 301.52 -7.96 -37.70 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -3.54 Total: 8.10 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: -4.40 Total: -20.66 kcal Atomic # 7 Polarization: -42.18 SS G_CDS: 0.42 Total: -41.76 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.04 Total: -2.06 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.03 Total: 14.14 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.74 -7.96 -37.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211502086.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.218 kcal (2) G-P(sol) polarization free energy of solvation -29.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds