Wall clock time and date at job start Mon Mar 30 2020 01:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38177 * 120.35186 * 2 1 4 4 N 1.31952 * 120.96429 * 180.02562 * 3 2 1 5 5 C 1.31933 * 121.76952 * 0.02562 * 4 3 2 6 6 F 1.35102 * 119.70391 * 179.97438 * 5 4 3 7 7 C 1.39261 * 120.59447 * 0.02562 * 5 4 3 8 8 N 1.39738 * 120.50267 * 179.97438 * 7 5 4 9 9 C 1.38770 * 120.00161 * 73.70130 * 8 7 5 10 10 C 1.39623 * 119.84388 * 7.85474 * 9 8 7 11 11 C 1.36309 * 120.15004 * 179.76376 * 10 9 8 12 12 C 1.40901 * 119.84569 * 0.50900 * 11 10 9 13 13 C 1.41097 * 120.15525 * 179.72403 * 12 11 10 14 14 H 1.07998 * 120.00033 * 205.60357 * 13 12 11 15 15 C 1.39844 * 119.99877 * 25.60201 * 13 12 11 16 16 N 1.30922 * 120.00200 * 14.50133 * 15 13 12 17 17 Si 1.86799 * 119.99972 * 194.50159 * 15 13 12 18 18 H 1.48501 * 109.47248 * 60.00025 * 17 15 13 19 19 H 1.48504 * 109.47262 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47106 * 300.00085 * 17 15 13 21 21 C 1.40905 * 119.69376 * 359.74181 * 12 11 10 22 22 C 1.36304 * 119.84085 * 0.02562 * 21 12 11 23 23 C 1.38596 * 120.34827 * 179.72610 * 2 1 3 24 24 H 1.09003 * 109.46933 * 89.99586 * 1 2 3 25 25 H 1.08998 * 109.46990 * 209.99767 * 1 2 3 26 26 H 1.08998 * 109.46918 * 329.99987 * 1 2 3 27 27 H 1.07997 * 119.51460 * 0.02858 * 3 2 1 28 28 H 0.96996 * 119.99409 * 253.70085 * 8 7 5 29 29 H 1.08000 * 119.92304 * 359.97438 * 10 9 8 30 30 H 1.08007 * 120.07160 * 180.25330 * 11 10 9 31 31 H 0.96997 * 120.00089 * 179.97438 * 16 15 13 32 32 H 1.08002 * 120.08151 * 179.97438 * 21 12 11 33 33 H 1.08004 * 119.91889 * 179.97438 * 22 21 12 34 34 H 1.07996 * 120.80666 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2053 1.1924 0.0000 4 7 3.5247 1.2065 -0.0005 5 6 4.2313 0.0923 -0.0015 6 9 5.5808 0.1554 -0.0025 7 6 3.5986 -1.1483 -0.0027 8 7 4.3488 -2.3271 -0.0043 9 6 5.0064 -2.7327 1.1485 10 6 4.7861 -2.0549 2.3491 11 6 5.4250 -2.4510 3.4861 12 6 6.3176 -3.5404 3.4457 13 6 6.9869 -3.9523 4.6175 14 1 7.9327 -4.4688 4.5460 15 6 6.4256 -3.6917 5.8716 16 7 5.1707 -3.3303 5.9648 17 14 7.4663 -3.8591 7.4137 18 1 8.6197 -2.9269 7.3362 19 1 6.6430 -3.5291 8.6048 20 1 7.9638 -5.2538 7.5262 21 6 6.5391 -4.2165 2.2294 22 6 5.8899 -3.8127 1.1010 23 6 2.2073 -1.1960 0.0057 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6631 2.1264 0.0005 28 1 4.4100 -2.8619 -0.8112 29 1 4.1053 -1.2170 2.3776 30 1 5.2505 -1.9283 4.4151 31 1 4.7813 -3.1499 6.8346 32 1 7.2223 -5.0521 2.1911 33 1 6.0590 -4.3298 0.1679 34 1 1.6863 -2.1420 0.0098 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211502086.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:02 Heat of formation + Delta-G solvation = -0.612761 kcal Electronic energy + Delta-G solvation = -19785.182450 eV Core-core repulsion = 16596.418851 eV Total energy + Delta-G solvation = -3188.763599 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.97861 -41.35886 -39.71941 -37.03765 -35.02941 -34.49474 -31.92949 -31.44483 -29.86742 -27.92757 -26.51565 -24.77179 -23.35230 -22.96901 -21.76633 -19.22993 -19.04575 -18.57648 -18.17629 -17.53939 -16.96058 -16.81043 -15.74599 -15.63480 -14.88636 -14.80285 -14.78276 -14.52924 -14.29627 -13.98635 -13.79169 -13.57387 -13.30941 -13.25012 -12.91382 -12.81416 -12.76402 -12.35572 -11.67348 -11.41500 -11.32382 -10.95324 -10.79753 -10.40753 -9.68529 -9.49247 -8.59656 -8.35397 -6.12344 -0.17774 0.06305 1.02218 1.12250 1.38886 1.50068 1.55410 2.24544 2.38887 2.56740 2.70095 2.79941 3.54949 3.75476 3.85899 3.92733 4.10624 4.30410 4.43194 4.54915 4.75870 4.88657 4.94163 4.97062 5.01265 5.17514 5.20723 5.25019 5.36934 5.50444 5.66679 5.72655 5.86479 6.11893 6.29332 6.54251 6.60422 6.75930 6.97331 7.01669 7.13230 8.43397 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.024546 B = 0.004646 C = 0.004404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.452140 B = 6025.434677 C = 6356.254269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.124 4.124 3 C 0.117 3.883 4 N -0.529 5.529 5 C 0.254 3.746 6 F -0.129 7.129 7 C 0.096 3.904 8 N -0.693 5.693 9 C 0.093 3.907 10 C -0.157 4.157 11 C -0.148 4.148 12 C 0.047 3.953 13 C -0.501 4.501 14 H 0.073 0.927 15 C 0.030 3.970 16 N -0.841 5.841 17 Si 0.980 3.020 18 H -0.264 1.264 19 H -0.270 1.270 20 H -0.258 1.258 21 C -0.197 4.197 22 C -0.144 4.144 23 C -0.068 4.068 24 H 0.095 0.905 25 H 0.075 0.925 26 H 0.090 0.910 27 H 0.202 0.798 28 H 0.413 0.587 29 H 0.082 0.918 30 H 0.100 0.900 31 H 0.283 0.717 32 H 0.106 0.894 33 H 0.128 0.872 34 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.640 5.088 -10.530 15.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.127 4.127 3 C -0.040 4.040 4 N -0.244 5.244 5 C 0.099 3.901 6 F -0.109 7.109 7 C -0.002 4.002 8 N -0.327 5.327 9 C -0.003 4.003 10 C -0.178 4.178 11 C -0.169 4.169 12 C 0.044 3.956 13 C -0.532 4.532 14 H 0.092 0.908 15 C -0.182 4.182 16 N -0.469 5.469 17 Si 0.801 3.199 18 H -0.189 1.189 19 H -0.194 1.194 20 H -0.183 1.183 21 C -0.217 4.217 22 C -0.165 4.165 23 C -0.095 4.095 24 H 0.114 0.886 25 H 0.094 0.906 26 H 0.109 0.891 27 H 0.219 0.781 28 H 0.252 0.748 29 H 0.100 0.900 30 H 0.118 0.882 31 H 0.094 0.906 32 H 0.124 0.876 33 H 0.146 0.854 34 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -10.336 6.013 -10.281 15.770 hybrid contribution 0.665 -0.948 0.620 1.314 sum -9.671 5.065 -9.661 14.578 Atomic orbital electron populations 1.20820 0.86328 1.04682 1.04295 1.21326 1.00031 0.92099 0.99234 1.23094 0.86407 1.00060 0.94454 1.66968 1.11276 1.30175 1.15952 1.19131 0.78491 0.90795 1.01647 1.91557 1.28788 1.96999 1.93507 1.18327 0.91995 0.85772 1.04130 1.40956 1.56094 1.23684 1.11927 1.17330 0.98680 0.98468 0.85838 1.20069 1.03593 1.01308 0.92856 1.20870 1.01168 0.98171 0.96650 1.17864 0.93118 0.91253 0.93391 1.19648 1.06751 1.35470 0.91354 0.90837 1.26677 0.95607 0.92180 1.03722 1.69905 1.13174 1.36269 1.27533 0.85288 0.78680 0.79876 0.76040 1.18861 1.19410 1.18256 1.20803 1.05368 1.01959 0.93609 1.20131 0.99147 0.98748 0.98494 1.22116 0.91173 1.00777 0.95430 0.88633 0.90571 0.89074 0.78115 0.74813 0.90013 0.88200 0.90638 0.87614 0.85435 0.81967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.11 10.04 71.24 0.71 -0.39 16 2 C -0.12 -2.43 5.89 -19.79 -0.12 -2.55 16 3 C 0.12 2.60 10.85 84.66 0.92 3.52 16 4 N -0.53 -16.93 10.36 -196.36 -2.04 -18.97 16 5 C 0.25 9.18 7.89 84.92 0.67 9.85 16 6 F -0.13 -5.38 17.08 44.97 0.77 -4.61 16 7 C 0.10 3.11 4.58 38.36 0.18 3.29 16 8 N -0.69 -23.80 5.23 -179.69 -0.94 -24.74 16 9 C 0.09 4.05 6.57 38.71 0.25 4.30 16 10 C -0.16 -7.77 9.09 22.15 0.20 -7.57 16 11 C -0.15 -8.29 8.62 22.47 0.19 -8.10 16 12 C 0.05 2.61 5.57 -21.27 -0.12 2.49 16 13 C -0.50 -28.16 9.04 23.36 0.21 -27.95 16 14 H 0.07 3.95 7.89 -2.91 -0.02 3.93 16 15 C 0.03 1.60 5.20 85.22 0.44 2.04 16 16 N -0.84 -46.17 10.82 21.81 0.24 -45.93 16 17 Si 0.98 40.13 29.58 68.60 2.03 42.16 16 18 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 19 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 20 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 21 C -0.20 -9.78 9.74 22.47 0.22 -9.56 16 22 C -0.14 -6.24 9.83 22.15 0.22 -6.02 16 23 C -0.07 -1.67 9.79 22.59 0.22 -1.45 16 24 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.08 0.80 8.09 -2.39 -0.02 0.78 16 26 H 0.09 0.69 8.09 -2.39 -0.02 0.67 16 27 H 0.20 2.72 8.06 -2.91 -0.02 2.70 16 28 H 0.41 11.64 8.83 -92.71 -0.82 10.82 16 29 H 0.08 3.96 6.76 -2.91 -0.02 3.94 16 30 H 0.10 5.92 6.10 -2.91 -0.02 5.90 16 31 H 0.28 14.18 8.30 -92.71 -0.77 13.41 16 32 H 0.11 4.87 8.06 -2.91 -0.02 4.85 16 33 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16 34 H 0.16 3.34 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -68.41 301.52 4.58 -63.83 By element: Atomic # 1 Polarization: 26.04 SS G_CDS: 0.32 Total: 26.36 kcal Atomic # 6 Polarization: -42.30 SS G_CDS: 4.21 Total: -38.10 kcal Atomic # 7 Polarization: -86.90 SS G_CDS: -2.74 Total: -89.64 kcal Atomic # 9 Polarization: -5.38 SS G_CDS: 0.77 Total: -4.61 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 2.03 Total: 42.16 kcal Total: -68.41 4.58 -63.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211502086.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.216 kcal (2) G-P(sol) polarization free energy of solvation -68.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds