Wall clock time and date at job start Mon Mar 30 2020 01:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38152 * 120.35471 * 2 1 4 4 N 1.31954 * 120.95339 * 179.97438 * 3 2 1 5 5 C 1.31942 * 121.76275 * 0.02562 * 4 3 2 6 6 F 1.35100 * 119.69675 * 179.97438 * 5 4 3 7 7 C 1.39203 * 120.60453 * 0.02562 * 5 4 3 8 8 N 1.39884 * 120.49879 * 179.97438 * 7 5 4 9 9 C 1.39702 * 119.99728 * 172.71429 * 8 7 5 10 10 C 1.39352 * 119.95693 * 320.48934 * 9 8 7 11 11 C 1.38472 * 120.42622 * 179.97438 * 10 9 8 12 12 C 1.37695 * 120.32210 * 0.04771 * 11 10 9 13 13 C 1.40749 * 119.90096 * 359.97438 * 12 11 10 14 14 C 1.41409 * 120.20797 * 180.27499 * 13 12 11 15 15 H 1.07997 * 120.00023 * 151.18603 * 14 13 12 16 16 C 1.39933 * 119.99823 * 331.18962 * 14 13 12 17 17 N 1.30833 * 119.99946 * 162.23665 * 16 14 13 18 18 Si 1.86798 * 119.99913 * 342.23093 * 16 14 13 19 19 H 1.48503 * 109.46856 * 91.38449 * 18 16 14 20 20 H 1.48500 * 109.47044 * 211.38392 * 18 16 14 21 21 H 1.48495 * 109.47448 * 331.38776 * 18 16 14 22 22 C 1.38304 * 119.94902 * 140.51597 * 9 8 7 23 23 C 1.38624 * 120.34903 * 180.27032 * 2 1 3 24 24 H 1.09009 * 109.47005 * 90.00231 * 1 2 3 25 25 H 1.09006 * 109.47678 * 209.99918 * 1 2 3 26 26 H 1.09000 * 109.47268 * 330.00615 * 1 2 3 27 27 H 1.07999 * 119.52169 * 359.97438 * 3 2 1 28 28 H 0.96997 * 120.00142 * 352.70622 * 8 7 5 29 29 H 1.08006 * 119.78706 * 0.02562 * 10 9 8 30 30 H 1.07999 * 119.83616 * 180.02562 * 11 10 9 31 31 H 1.08006 * 120.04826 * 179.97438 * 12 11 10 32 32 H 0.96994 * 120.00229 * 179.97438 * 17 16 14 33 33 H 1.07991 * 120.16816 * 0.02562 * 22 9 8 34 34 H 1.07992 * 120.81360 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2051 1.1921 0.0000 4 7 3.5246 1.2059 0.0005 5 6 4.2308 0.0914 0.0005 6 9 5.5804 0.1542 0.0005 7 6 3.5981 -1.1485 -0.0005 8 7 4.3491 -2.3287 -0.0010 9 6 3.7114 -3.5623 0.1514 10 6 2.6529 -3.6924 1.0483 11 6 2.0136 -4.9105 1.2067 12 6 2.4180 -6.0076 0.4795 13 6 3.4859 -5.8917 -0.4300 14 6 3.9028 -7.0128 -1.1843 15 1 4.3507 -6.8728 -2.1570 16 6 3.7349 -8.3035 -0.6705 17 7 3.7859 -9.3377 -1.4703 18 14 3.4381 -8.5498 1.1572 19 1 1.9775 -8.5531 1.4254 20 1 4.0226 -9.8468 1.5832 21 1 4.0782 -7.4454 1.9160 22 6 4.1320 -4.6530 -0.5879 23 6 2.2074 -1.1963 -0.0056 24 1 -0.3633 0.0000 -1.0278 25 1 -0.3635 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5137 27 1 1.6631 2.1263 -0.0004 28 1 5.3124 -2.2906 -0.1073 29 1 2.3285 -2.8375 1.6231 30 1 1.1940 -5.0004 1.9042 31 1 1.9165 -6.9556 0.6068 32 1 3.6699 -10.2324 -1.1141 33 1 4.9527 -4.5537 -1.2827 34 1 1.6865 -2.1423 -0.0105 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211506413.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:04 Heat of formation + Delta-G solvation = 12.724265 kcal Electronic energy + Delta-G solvation = -19737.355974 eV Core-core repulsion = 16549.170712 eV Total energy + Delta-G solvation = -3188.185262 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.76096 -40.26449 -38.34042 -35.72858 -33.54133 -33.39825 -30.68985 -30.48964 -28.10178 -26.94199 -25.40523 -23.59352 -22.15392 -21.18410 -20.52114 -18.10159 -17.86823 -17.43211 -16.34016 -15.98389 -15.78413 -15.20032 -14.74942 -14.35731 -14.00398 -13.79363 -13.62048 -13.17903 -13.00845 -12.82329 -12.50523 -12.46787 -12.18079 -12.00780 -11.62754 -11.30193 -11.12747 -10.82963 -10.47855 -10.05246 -9.75742 -9.64418 -9.33398 -9.06405 -8.27446 -7.85327 -7.08150 -6.91886 -4.65105 1.05972 1.30974 2.44163 2.49883 3.02279 3.13774 3.22784 3.43848 3.72678 3.80891 3.87418 4.33732 4.59521 4.76460 5.03073 5.10558 5.25748 5.53291 5.55014 5.63433 5.81450 5.92929 6.04717 6.13236 6.26388 6.32822 6.48899 6.55126 6.64707 6.80551 7.07887 7.27565 7.37829 7.47548 7.71545 7.78966 7.88781 8.05248 8.22289 8.48866 8.65795 9.93769 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.028909 B = 0.004680 C = 0.004315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.315207 B = 5981.045679 C = 6487.494489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.102 4.102 3 C 0.064 3.936 4 N -0.476 5.476 5 C 0.218 3.782 6 F -0.121 7.121 7 C 0.160 3.840 8 N -0.669 5.669 9 C 0.181 3.819 10 C -0.275 4.275 11 C -0.057 4.057 12 C -0.253 4.253 13 C 0.111 3.889 14 C -0.443 4.443 15 H 0.092 0.908 16 C 0.084 3.916 17 N -0.802 5.802 18 Si 0.917 3.083 19 H -0.268 1.268 20 H -0.291 1.291 21 H -0.246 1.246 22 C -0.232 4.232 23 C -0.128 4.128 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.159 0.841 28 H 0.409 0.591 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.287 0.713 33 H 0.104 0.896 34 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.934 12.152 3.890 13.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.105 4.105 3 C -0.096 4.096 4 N -0.188 5.188 5 C 0.059 3.941 6 F -0.101 7.101 7 C 0.053 3.947 8 N -0.289 5.289 9 C 0.088 3.912 10 C -0.296 4.296 11 C -0.076 4.076 12 C -0.272 4.272 13 C 0.107 3.893 14 C -0.471 4.471 15 H 0.110 0.890 16 C -0.136 4.136 17 N -0.425 5.425 18 Si 0.744 3.256 19 H -0.194 1.194 20 H -0.219 1.219 21 H -0.169 1.169 22 C -0.254 4.254 23 C -0.158 4.158 24 H 0.093 0.907 25 H 0.091 0.909 26 H 0.089 0.911 27 H 0.176 0.824 28 H 0.246 0.754 29 H 0.119 0.881 30 H 0.117 0.883 31 H 0.122 0.878 32 H 0.098 0.902 33 H 0.122 0.878 34 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -4.472 12.528 3.796 13.834 hybrid contribution 0.247 -1.033 0.618 1.229 sum -4.226 11.495 4.414 13.018 Atomic orbital electron populations 1.20716 0.89850 1.03225 1.02795 1.20769 0.97686 0.93070 0.98951 1.22032 0.87335 0.97744 1.02469 1.66793 1.09687 1.29373 1.12939 1.17529 0.78566 0.88495 1.09532 1.91548 1.27346 1.96813 1.94371 1.18580 0.92561 0.85926 0.97654 1.42160 1.08851 1.01830 1.76077 1.17467 0.94807 0.83277 0.95666 1.20281 1.04724 0.98131 1.06434 1.20436 0.97531 0.92515 0.97070 1.21135 1.02059 0.98189 1.05832 1.17502 0.89409 0.92393 0.90005 1.19514 1.34408 0.88900 1.04246 0.89043 1.26200 0.90905 0.95466 1.01019 1.69684 1.34478 1.00503 1.37874 0.86265 0.79259 0.77871 0.82192 1.19420 1.21888 1.16922 1.20768 1.05353 0.93649 1.05670 1.21617 0.91111 1.00339 1.02708 0.90662 0.90930 0.91129 0.82368 0.75445 0.88063 0.88294 0.87788 0.90210 0.87783 0.81920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 10.03 36.00 0.36 -0.60 16 2 C -0.10 -1.26 5.89 -104.51 -0.62 -1.87 16 3 C 0.06 0.80 10.85 -17.53 -0.19 0.61 16 4 N -0.48 -7.41 10.37 -13.43 -0.14 -7.54 16 5 C 0.22 3.56 8.43 -17.15 -0.14 3.41 16 6 F -0.12 -1.98 16.70 2.25 0.04 -1.94 16 7 C 0.16 2.62 6.45 -83.48 -0.54 2.08 16 8 N -0.67 -11.54 5.48 -8.29 -0.05 -11.59 16 9 C 0.18 3.59 5.96 -83.83 -0.50 3.09 16 10 C -0.27 -5.28 7.38 -39.08 -0.29 -5.57 16 11 C -0.06 -1.13 10.02 -39.69 -0.40 -1.53 16 12 C -0.25 -5.72 7.26 -38.83 -0.28 -6.00 16 13 C 0.11 2.66 5.13 -106.85 -0.55 2.11 16 14 C -0.44 -11.46 9.58 -37.74 -0.36 -11.82 16 15 H 0.09 2.49 8.06 -52.49 -0.42 2.06 16 16 C 0.08 2.11 5.42 -17.34 -0.09 2.02 16 17 N -0.80 -20.58 13.93 55.55 0.77 -19.80 16 18 Si 0.92 20.00 24.51 -169.99 -4.17 15.83 16 19 H -0.27 -5.63 6.50 56.52 0.37 -5.26 16 20 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.25 -5.51 6.98 56.52 0.39 -5.12 16 22 C -0.23 -5.12 9.71 -38.67 -0.38 -5.50 16 23 C -0.13 -1.92 7.75 -39.10 -0.30 -2.22 16 24 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 25 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 26 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 27 H 0.16 1.46 8.06 -52.49 -0.42 1.04 16 28 H 0.41 6.47 8.36 -40.82 -0.34 6.13 16 29 H 0.10 1.78 6.42 -52.48 -0.34 1.44 16 30 H 0.10 1.70 8.06 -52.49 -0.42 1.27 16 31 H 0.10 2.36 4.42 -52.48 -0.23 2.12 16 32 H 0.29 6.66 8.30 -40.82 -0.34 6.32 16 33 H 0.10 2.21 8.06 -52.49 -0.42 1.78 16 34 H 0.16 2.55 5.35 -52.49 -0.28 2.27 16 LS Contribution 290.82 15.07 4.38 4.38 Total: -1.00 -26.90 290.82 -6.76 -33.65 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -3.32 Total: 8.79 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: -4.28 Total: -21.78 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.59 Total: -38.93 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.04 Total: -1.94 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -4.17 Total: 15.83 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -26.90 -6.76 -33.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211506413.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.378 kcal (2) G-P(sol) polarization free energy of solvation -26.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds