Wall clock time and date at job start Mon Mar 30 2020 01:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38179 * 120.34631 * 2 1 4 4 N 1.31962 * 120.96103 * 180.02562 * 3 2 1 5 5 C 1.31932 * 121.76663 * 0.02562 * 4 3 2 6 6 F 1.35109 * 119.70002 * 179.97438 * 5 4 3 7 7 C 1.39262 * 120.60004 * 359.97438 * 5 4 3 8 8 N 1.39723 * 120.50769 * 180.02562 * 7 5 4 9 9 C 1.38645 * 120.00241 * 183.30866 * 8 7 5 10 10 C 1.38823 * 120.29813 * 260.42978 * 9 8 7 11 11 C 1.38108 * 120.02449 * 180.02562 * 10 9 8 12 12 C 1.38938 * 120.63161 * 359.97438 * 11 10 9 13 13 C 1.36416 * 120.60824 * 359.97438 * 12 11 10 14 14 C 1.40744 * 119.95952 * 0.25666 * 13 12 11 15 15 C 1.40996 * 120.31356 * 179.74516 * 14 13 12 16 16 H 1.08006 * 120.00207 * 209.92234 * 15 14 13 17 17 C 1.39907 * 119.99961 * 29.91873 * 15 14 13 18 18 N 1.30886 * 120.00431 * 11.74092 * 17 15 14 19 19 Si 1.86806 * 120.00017 * 191.73766 * 17 15 14 20 20 H 1.48493 * 109.47179 * 60.00061 * 19 17 15 21 21 H 1.48504 * 109.47052 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47166 * 300.00077 * 19 17 15 23 23 C 1.38599 * 120.34871 * 180.26374 * 2 1 3 24 24 H 1.08996 * 109.47061 * 89.99508 * 1 2 3 25 25 H 1.08997 * 109.46742 * 209.99759 * 1 2 3 26 26 H 1.09000 * 109.47099 * 329.99500 * 1 2 3 27 27 H 1.07994 * 119.51756 * 0.04919 * 3 2 1 28 28 H 0.97004 * 119.99890 * 3.29915 * 8 7 5 29 29 H 1.08006 * 119.98617 * 359.97438 * 10 9 8 30 30 H 1.07997 * 119.68027 * 179.97438 * 11 10 9 31 31 H 1.07998 * 119.68871 * 180.02562 * 12 11 10 32 32 H 1.08003 * 120.02087 * 179.97438 * 13 12 11 33 33 H 0.96998 * 120.00462 * 180.02562 * 18 17 15 34 34 H 1.07992 * 120.80927 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2052 1.1925 0.0000 4 7 3.5248 1.2066 -0.0005 5 6 4.2313 0.0925 -0.0015 6 9 5.5809 0.1557 -0.0025 7 6 3.5987 -1.1482 -0.0016 8 7 4.3489 -2.3269 -0.0021 9 6 3.7098 -3.5554 -0.0715 10 6 3.5065 -4.3050 1.0791 11 6 2.8697 -5.5282 1.0035 12 6 2.4266 -6.0213 -0.2176 13 6 2.6119 -5.3057 -1.3641 14 6 3.2621 -4.0584 -1.3168 15 6 3.4624 -3.3150 -2.4981 16 1 4.3165 -2.6597 -2.5855 17 6 2.5549 -3.4264 -3.5570 18 7 1.4086 -4.0316 -3.3757 19 14 2.9790 -2.7110 -5.2297 20 1 4.2130 -3.3562 -5.7456 21 1 1.8589 -2.9591 -6.1726 22 1 3.2020 -1.2485 -5.1006 23 6 2.2074 -1.1961 -0.0055 24 1 -0.3633 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 1.6630 2.1264 0.0008 28 1 5.3168 -2.2858 0.0459 29 1 3.8471 -3.9318 2.0337 30 1 2.7148 -6.1069 1.9020 31 1 1.9301 -6.9794 -0.2591 32 1 2.2640 -5.6983 -2.3082 33 1 0.7796 -4.1091 -4.1100 34 1 1.6864 -2.1420 -0.0094 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211506471.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:06 Heat of formation + Delta-G solvation = 8.704967 kcal Electronic energy + Delta-G solvation = -20509.357578 eV Core-core repulsion = 17320.998027 eV Total energy + Delta-G solvation = -3188.359552 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.32257 -39.68787 -38.02937 -35.00247 -33.79641 -32.95864 -30.20145 -29.72086 -27.78136 -26.54112 -25.29815 -23.13217 -21.51890 -21.13487 -20.14071 -17.60695 -17.44605 -17.26778 -16.08230 -15.52948 -15.42633 -15.07233 -14.30783 -13.97180 -13.87546 -13.39604 -13.21265 -12.83271 -12.69172 -12.58188 -12.05860 -12.03699 -11.72044 -11.57084 -11.36033 -11.23172 -10.98299 -10.70782 -10.56953 -9.87652 -9.64145 -9.35443 -9.19047 -8.60939 -7.64074 -7.56109 -6.98608 -6.76632 -4.55811 1.57042 1.91023 2.57601 2.75796 2.98652 3.02997 3.11523 3.83330 4.03723 4.23203 4.32689 4.49725 5.07944 5.22895 5.41760 5.44345 5.58615 5.89943 6.01675 6.04473 6.07488 6.24125 6.31233 6.43411 6.66430 6.77770 6.89860 6.93247 7.05741 7.15879 7.29646 7.54822 7.74498 7.89840 8.03959 8.09855 8.26211 8.29469 8.54681 8.68404 8.85183 10.03305 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.012851 B = 0.008814 C = 0.007099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.336799 B = 3176.128392 C = 3943.144947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.101 4.101 3 C 0.048 3.952 4 N -0.477 5.477 5 C 0.198 3.802 6 F -0.128 7.128 7 C 0.188 3.812 8 N -0.649 5.649 9 C -0.011 4.011 10 C -0.083 4.083 11 C -0.235 4.235 12 C -0.102 4.102 13 C -0.148 4.148 14 C 0.119 3.881 15 C -0.445 4.445 16 H 0.076 0.924 17 C 0.078 3.922 18 N -0.791 5.791 19 Si 0.905 3.095 20 H -0.263 1.263 21 H -0.276 1.276 22 H -0.264 1.264 23 C -0.109 4.109 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.153 0.847 28 H 0.396 0.604 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.120 0.880 33 H 0.283 0.717 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.762 3.427 3.310 5.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.104 4.104 3 C -0.112 4.112 4 N -0.190 5.190 5 C 0.039 3.961 6 F -0.107 7.107 7 C 0.079 3.921 8 N -0.269 5.269 9 C -0.104 4.104 10 C -0.102 4.102 11 C -0.255 4.255 12 C -0.120 4.120 13 C -0.168 4.168 14 C 0.115 3.885 15 C -0.474 4.474 16 H 0.094 0.906 17 C -0.140 4.140 18 N -0.416 5.416 19 Si 0.730 3.270 20 H -0.187 1.187 21 H -0.201 1.201 22 H -0.189 1.189 23 C -0.139 4.139 24 H 0.091 0.909 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.170 0.830 28 H 0.232 0.768 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.138 0.862 33 H 0.094 0.906 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.562 3.973 3.164 5.313 hybrid contribution 0.340 -0.464 -0.874 1.046 sum -1.222 3.508 2.290 4.364 Atomic orbital electron populations 1.20662 0.90428 1.02556 1.02570 1.20676 0.97306 0.93285 0.99151 1.21817 0.87393 0.97346 1.04645 1.66670 1.09604 1.29697 1.13022 1.17502 0.78281 0.88715 1.11596 1.91501 1.27697 1.96861 1.94671 1.18672 0.92460 0.86077 0.94903 1.41096 1.06906 1.01168 1.77729 1.17328 1.13066 0.87327 0.92724 1.20768 0.98619 0.95051 0.95803 1.20250 1.10107 0.98433 0.96705 1.20518 0.99643 0.98441 0.93441 1.21032 1.03739 0.94507 0.97514 1.17804 0.88903 0.90757 0.91057 1.19363 1.08405 1.22122 0.97511 0.90579 1.25873 0.93983 0.93684 1.00510 1.69784 1.05592 1.32736 1.33518 0.86382 0.79252 0.80520 0.80865 1.18746 1.20116 1.18885 1.21004 0.91050 0.99200 1.02646 0.90904 0.91312 0.91596 0.83017 0.76810 0.89084 0.89114 0.89189 0.86236 0.90632 0.83576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.39 10.03 36.01 0.36 -1.03 16 2 C -0.10 -1.71 5.89 -104.51 -0.62 -2.33 16 3 C 0.05 0.80 10.85 -17.52 -0.19 0.61 16 4 N -0.48 -9.24 10.36 -13.41 -0.14 -9.38 16 5 C 0.20 3.99 8.43 -17.13 -0.14 3.84 16 6 F -0.13 -2.50 16.69 2.25 0.04 -2.46 16 7 C 0.19 3.84 6.44 -83.52 -0.54 3.30 16 8 N -0.65 -13.24 4.70 -7.89 -0.04 -13.28 16 9 C -0.01 -0.24 4.49 -83.29 -0.37 -0.62 16 10 C -0.08 -1.72 9.96 -39.41 -0.39 -2.11 16 11 C -0.23 -4.82 10.03 -39.37 -0.40 -5.21 16 12 C -0.10 -2.18 9.96 -39.98 -0.40 -2.58 16 13 C -0.15 -3.52 8.59 -39.29 -0.34 -3.86 16 14 C 0.12 2.87 5.38 -106.63 -0.57 2.30 16 15 C -0.44 -11.01 8.45 -37.91 -0.32 -11.33 16 16 H 0.08 1.91 7.67 -52.48 -0.40 1.51 16 17 C 0.08 1.85 5.22 -17.33 -0.09 1.76 16 18 N -0.79 -19.01 10.97 55.55 0.61 -18.40 16 19 Si 0.91 18.44 29.58 -169.99 -5.03 13.42 16 20 H -0.26 -5.33 7.11 56.52 0.40 -4.92 16 21 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 22 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 23 C -0.11 -2.16 9.07 -39.09 -0.35 -2.51 16 24 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 26 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 27 H 0.15 2.00 8.06 -52.49 -0.42 1.58 16 28 H 0.40 7.46 8.34 -40.82 -0.34 7.12 16 29 H 0.09 1.73 8.06 -52.48 -0.42 1.31 16 30 H 0.09 1.65 8.06 -52.49 -0.42 1.22 16 31 H 0.09 1.72 8.06 -52.49 -0.42 1.29 16 32 H 0.12 2.95 6.34 -52.48 -0.33 2.61 16 33 H 0.28 6.27 8.30 -40.82 -0.34 5.93 16 34 H 0.15 3.16 6.99 -52.49 -0.37 2.79 16 LS Contribution 300.63 15.07 4.53 4.53 Total: -1.00 -25.85 300.63 -7.92 -33.77 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -3.53 Total: 11.57 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: -4.36 Total: -19.76 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: 0.43 Total: -41.06 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.04 Total: -2.46 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.03 Total: 13.42 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -25.85 -7.92 -33.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211506471.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.474 kcal (2) G-P(sol) polarization free energy of solvation -25.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds