Wall clock time and date at job start Mon Mar 30 2020 01:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38179 * 120.34631 * 2 1 4 4 N 1.31962 * 120.96103 * 180.02562 * 3 2 1 5 5 C 1.31932 * 121.76663 * 0.02562 * 4 3 2 6 6 F 1.35109 * 119.70002 * 179.97438 * 5 4 3 7 7 C 1.39262 * 120.60004 * 359.97438 * 5 4 3 8 8 N 1.39723 * 120.50769 * 180.02562 * 7 5 4 9 9 C 1.38645 * 120.00241 * 183.30866 * 8 7 5 10 10 C 1.38823 * 120.29813 * 260.42978 * 9 8 7 11 11 C 1.38108 * 120.02449 * 180.02562 * 10 9 8 12 12 C 1.38938 * 120.63161 * 359.97438 * 11 10 9 13 13 C 1.36416 * 120.60824 * 359.97438 * 12 11 10 14 14 C 1.40744 * 119.95952 * 0.25666 * 13 12 11 15 15 C 1.40996 * 120.31356 * 179.74516 * 14 13 12 16 16 H 1.08006 * 120.00207 * 209.92234 * 15 14 13 17 17 C 1.39907 * 119.99961 * 29.91873 * 15 14 13 18 18 N 1.30886 * 120.00431 * 11.74092 * 17 15 14 19 19 Si 1.86806 * 120.00017 * 191.73766 * 17 15 14 20 20 H 1.48493 * 109.47179 * 60.00061 * 19 17 15 21 21 H 1.48504 * 109.47052 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47166 * 300.00077 * 19 17 15 23 23 C 1.38599 * 120.34871 * 180.26374 * 2 1 3 24 24 H 1.08996 * 109.47061 * 89.99508 * 1 2 3 25 25 H 1.08997 * 109.46742 * 209.99759 * 1 2 3 26 26 H 1.09000 * 109.47099 * 329.99500 * 1 2 3 27 27 H 1.07994 * 119.51756 * 0.04919 * 3 2 1 28 28 H 0.97004 * 119.99890 * 3.29915 * 8 7 5 29 29 H 1.08006 * 119.98617 * 359.97438 * 10 9 8 30 30 H 1.07997 * 119.68027 * 179.97438 * 11 10 9 31 31 H 1.07998 * 119.68871 * 180.02562 * 12 11 10 32 32 H 1.08003 * 120.02087 * 179.97438 * 13 12 11 33 33 H 0.96998 * 120.00462 * 180.02562 * 18 17 15 34 34 H 1.07992 * 120.80927 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2052 1.1925 0.0000 4 7 3.5248 1.2066 -0.0005 5 6 4.2313 0.0925 -0.0015 6 9 5.5809 0.1557 -0.0025 7 6 3.5987 -1.1482 -0.0016 8 7 4.3489 -2.3269 -0.0021 9 6 3.7098 -3.5554 -0.0715 10 6 3.5065 -4.3050 1.0791 11 6 2.8697 -5.5282 1.0035 12 6 2.4266 -6.0213 -0.2176 13 6 2.6119 -5.3057 -1.3641 14 6 3.2621 -4.0584 -1.3168 15 6 3.4624 -3.3150 -2.4981 16 1 4.3165 -2.6597 -2.5855 17 6 2.5549 -3.4264 -3.5570 18 7 1.4086 -4.0316 -3.3757 19 14 2.9790 -2.7110 -5.2297 20 1 4.2130 -3.3562 -5.7456 21 1 1.8589 -2.9591 -6.1726 22 1 3.2020 -1.2485 -5.1006 23 6 2.2074 -1.1961 -0.0055 24 1 -0.3633 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 1.6630 2.1264 0.0008 28 1 5.3168 -2.2858 0.0459 29 1 3.8471 -3.9318 2.0337 30 1 2.7148 -6.1069 1.9020 31 1 1.9301 -6.9794 -0.2591 32 1 2.2640 -5.6983 -2.3082 33 1 0.7796 -4.1091 -4.1100 34 1 1.6864 -2.1420 -0.0094 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211506471.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:05 Heat of formation + Delta-G solvation = -3.768566 kcal Electronic energy + Delta-G solvation = -20509.898471 eV Core-core repulsion = 17320.998027 eV Total energy + Delta-G solvation = -3188.900445 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.84474 -41.17876 -39.68651 -36.60225 -35.55295 -34.30507 -31.80239 -31.45305 -29.38321 -27.83961 -27.04163 -24.65881 -22.97544 -22.86637 -21.78622 -19.21876 -19.12361 -18.79079 -17.70454 -17.09775 -16.99164 -16.66735 -15.94547 -15.57798 -15.40670 -14.68154 -14.66792 -14.47060 -14.30604 -14.15203 -13.44628 -13.37349 -13.32886 -13.09618 -12.88588 -12.75814 -12.64376 -12.34231 -12.17860 -11.61783 -11.30463 -11.12024 -10.65949 -10.02897 -9.35909 -9.30641 -8.69826 -8.37218 -6.38667 0.10322 0.42954 0.86591 1.03319 1.32700 1.40476 1.46219 2.15118 2.51019 2.72865 2.77768 2.83159 3.61816 3.67539 3.91077 4.15748 4.24218 4.43221 4.58362 4.66385 4.77471 4.85882 4.89596 5.10267 5.11068 5.20820 5.24699 5.34870 5.40243 5.49957 5.72356 5.85451 6.00672 6.14284 6.31699 6.40766 6.63684 6.80420 6.82474 6.88992 7.12972 8.29444 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.012851 B = 0.008814 C = 0.007099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.336799 B = 3176.128392 C = 3943.144947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.094 4.094 3 C 0.057 3.943 4 N -0.490 5.490 5 C 0.180 3.820 6 F -0.130 7.130 7 C 0.175 3.825 8 N -0.654 5.654 9 C -0.005 4.005 10 C -0.089 4.089 11 C -0.226 4.226 12 C -0.104 4.104 13 C -0.171 4.171 14 C 0.095 3.905 15 C -0.472 4.472 16 H 0.060 0.940 17 C 0.046 3.954 18 N -0.815 5.815 19 Si 0.961 3.039 20 H -0.263 1.263 21 H -0.262 1.262 22 H -0.273 1.273 23 C -0.126 4.126 24 H 0.077 0.923 25 H 0.066 0.934 26 H 0.102 0.898 27 H 0.196 0.804 28 H 0.400 0.600 29 H 0.111 0.889 30 H 0.122 0.878 31 H 0.114 0.886 32 H 0.103 0.897 33 H 0.288 0.712 34 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.858 4.308 4.070 6.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.096 4.096 3 C -0.103 4.103 4 N -0.203 5.203 5 C 0.022 3.978 6 F -0.110 7.110 7 C 0.066 3.934 8 N -0.275 5.275 9 C -0.099 4.099 10 C -0.109 4.109 11 C -0.246 4.246 12 C -0.122 4.122 13 C -0.191 4.191 14 C 0.091 3.909 15 C -0.501 4.501 16 H 0.078 0.922 17 C -0.170 4.170 18 N -0.441 5.441 19 Si 0.783 3.217 20 H -0.187 1.187 21 H -0.186 1.186 22 H -0.198 1.198 23 C -0.156 4.156 24 H 0.095 0.905 25 H 0.085 0.915 26 H 0.121 0.879 27 H 0.213 0.787 28 H 0.237 0.763 29 H 0.129 0.871 30 H 0.140 0.860 31 H 0.132 0.868 32 H 0.121 0.879 33 H 0.099 0.901 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.653 4.847 3.934 6.783 hybrid contribution 0.623 -0.721 -0.967 1.358 sum -2.030 4.126 2.967 5.472 Atomic orbital electron populations 1.20760 0.87548 1.04360 1.03307 1.21099 0.99337 0.92244 0.96947 1.22572 0.86656 0.98906 1.02210 1.66764 1.10845 1.29284 1.13407 1.17579 0.78404 0.88938 1.12877 1.91480 1.27844 1.96886 1.94805 1.18762 0.92792 0.86081 0.95739 1.41033 1.07108 1.00912 1.78432 1.17461 1.12032 0.87831 0.92571 1.21049 0.98449 0.95186 0.96205 1.20634 1.08296 0.98202 0.97429 1.20791 0.99215 0.99157 0.93063 1.21005 1.05175 0.95070 0.97831 1.18053 0.89821 0.91151 0.91852 1.19348 1.08737 1.23105 0.98934 0.92210 1.26428 0.93710 0.93983 1.02883 1.69818 1.06101 1.33751 1.34433 0.85558 0.79338 0.79039 0.77723 1.18704 1.18582 1.19829 1.20999 0.91025 0.99511 1.04102 0.90481 0.91468 0.87911 0.78720 0.76347 0.87077 0.85966 0.86816 0.87912 0.90112 0.85889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.43 10.03 71.24 0.71 -1.71 16 2 C -0.09 -3.00 5.89 -19.79 -0.12 -3.11 16 3 C 0.06 1.74 10.85 84.66 0.92 2.66 16 4 N -0.49 -18.30 10.36 -196.34 -2.04 -20.34 16 5 C 0.18 7.23 8.43 84.92 0.72 7.95 16 6 F -0.13 -5.16 16.69 44.97 0.75 -4.41 16 7 C 0.17 7.21 6.44 38.36 0.25 7.45 16 8 N -0.65 -27.22 4.70 -178.87 -0.84 -28.06 16 9 C -0.01 -0.23 4.49 39.03 0.18 -0.06 16 10 C -0.09 -3.62 9.96 22.38 0.22 -3.40 16 11 C -0.23 -8.82 10.03 22.41 0.22 -8.59 16 12 C -0.10 -4.36 9.96 22.01 0.22 -4.14 16 13 C -0.17 -8.27 8.59 22.46 0.19 -8.07 16 14 C 0.10 4.72 5.38 -21.17 -0.11 4.60 16 15 C -0.47 -24.19 8.45 23.35 0.20 -24.00 16 16 H 0.06 3.15 7.67 -2.91 -0.02 3.13 16 17 C 0.05 2.22 5.22 85.24 0.45 2.67 16 18 N -0.82 -40.00 10.97 21.82 0.24 -39.76 16 19 Si 0.96 38.42 29.58 68.60 2.03 40.45 16 20 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 21 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 22 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 23 C -0.13 -5.00 9.07 22.59 0.20 -4.80 16 24 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.07 1.63 8.10 -2.39 -0.02 1.61 16 26 H 0.10 1.69 8.09 -2.39 -0.02 1.67 16 27 H 0.20 4.22 8.06 -2.91 -0.02 4.19 16 28 H 0.40 15.51 8.34 -92.71 -0.77 14.73 16 29 H 0.11 4.02 8.06 -2.91 -0.02 4.00 16 30 H 0.12 4.00 8.06 -2.91 -0.02 3.97 16 31 H 0.11 4.15 8.06 -2.91 -0.02 4.12 16 32 H 0.10 5.24 6.34 -2.91 -0.02 5.23 16 33 H 0.29 12.94 8.30 -92.71 -0.77 12.17 16 34 H 0.12 5.45 6.99 -2.91 -0.02 5.43 16 Total: -1.00 -56.54 300.63 4.76 -51.78 By element: Atomic # 1 Polarization: 32.51 SS G_CDS: 0.37 Total: 32.88 kcal Atomic # 6 Polarization: -36.80 SS G_CDS: 4.25 Total: -32.55 kcal Atomic # 7 Polarization: -85.52 SS G_CDS: -2.64 Total: -88.16 kcal Atomic # 9 Polarization: -5.16 SS G_CDS: 0.75 Total: -4.41 kcal Atomic # 14 Polarization: 38.42 SS G_CDS: 2.03 Total: 40.45 kcal Total: -56.54 4.76 -51.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211506471.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.011 kcal (2) G-P(sol) polarization free energy of solvation -56.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds