Wall clock time and date at job start Mon Mar 30 2020 01:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38443 * 120.38419 * 2 1 4 4 C 1.39377 * 118.38064 * 180.02562 * 3 2 1 5 5 N 1.39737 * 120.46329 * 180.02562 * 4 3 2 6 6 C 1.38782 * 119.99929 * 149.68579 * 5 4 3 7 7 C 1.39612 * 119.84520 * 326.89785 * 6 5 4 8 8 C 1.36315 * 120.15692 * 180.27538 * 7 6 5 9 9 C 1.40897 * 119.83766 * 0.02562 * 8 7 6 10 10 C 1.41102 * 120.14867 * 179.97438 * 9 8 7 11 11 H 1.08003 * 120.00224 * 207.24262 * 10 9 8 12 12 C 1.39841 * 120.00428 * 27.24247 * 10 9 8 13 13 N 1.30920 * 119.99803 * 15.50026 * 12 10 9 14 14 Si 1.86793 * 120.00535 * 195.50218 * 12 10 9 15 15 H 1.48502 * 109.47144 * 89.99764 * 14 12 10 16 16 H 1.48498 * 109.47577 * 209.99807 * 14 12 10 17 17 H 1.48502 * 109.47115 * 330.00141 * 14 12 10 18 18 C 1.40902 * 119.69956 * 359.97438 * 9 8 7 19 19 C 1.36303 * 119.84234 * 359.97438 * 18 9 8 20 20 C 1.38885 * 119.06617 * 0.27154 * 4 3 2 21 21 N 1.31852 * 120.67950 * 359.43308 * 20 4 3 22 22 C 1.32052 * 121.77278 * 0.58556 * 21 20 4 23 23 F 1.35094 * 119.56225 * 179.72497 * 22 21 20 24 24 H 1.09001 * 109.47313 * 89.99943 * 1 2 3 25 25 H 1.09001 * 109.46649 * 210.00011 * 1 2 3 26 26 H 1.08994 * 109.47083 * 329.99483 * 1 2 3 27 27 H 1.08000 * 120.80785 * 0.02562 * 3 2 1 28 28 H 0.97000 * 120.00142 * 329.68515 * 5 4 3 29 29 H 1.08003 * 119.92233 * 0.24526 * 7 6 5 30 30 H 1.08005 * 120.07579 * 180.02562 * 8 7 6 31 31 H 0.97002 * 120.00467 * 180.02562 * 13 12 10 32 32 H 1.08000 * 120.07927 * 179.97438 * 18 9 8 33 33 H 1.07994 * 119.92598 * 180.02562 * 19 18 9 34 34 H 1.07997 * 119.65917 * 179.73040 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2073 1.1943 0.0000 4 6 3.6002 1.1456 -0.0005 5 7 4.3503 2.3245 0.0000 6 6 5.5984 2.3526 0.6062 7 6 5.8397 1.5690 1.7362 8 6 7.0616 1.5959 2.3400 9 6 8.0819 2.4176 1.8213 10 6 9.3489 2.4509 2.4414 11 1 9.9654 3.3343 2.3632 12 6 9.8066 1.3402 3.1572 13 7 9.2207 0.1789 3.0085 14 14 11.2537 1.5134 4.3256 15 1 10.7572 1.8696 5.6791 16 1 11.9929 0.2272 4.3922 17 1 12.1613 2.5812 3.8345 18 6 7.8313 3.2057 0.6805 19 6 6.6052 3.1683 0.0862 20 6 4.2321 -0.0912 -0.0068 21 7 3.5284 -1.2062 -0.0010 22 6 2.2079 -1.1951 -0.0005 23 9 1.5315 -2.3645 -0.0001 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8899 0.5139 27 1 1.6868 2.1406 0.0004 28 1 3.9987 3.1233 -0.4234 29 1 5.0564 0.9404 2.1332 30 1 7.2470 0.9889 3.2139 31 1 9.5379 -0.5916 3.5053 32 1 8.6088 3.8380 0.2780 33 1 6.4118 3.7715 -0.7884 34 1 5.3109 -0.1401 -0.0117 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212186302.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:07 Heat of formation + Delta-G solvation = 10.675002 kcal Electronic energy + Delta-G solvation = -19492.432765 eV Core-core repulsion = 16304.158641 eV Total energy + Delta-G solvation = -3188.274125 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.62353 -40.12064 -38.02251 -35.45994 -33.65588 -33.30276 -30.22810 -29.73814 -28.21103 -27.19401 -24.80138 -23.42388 -21.96488 -21.20244 -20.23471 -17.73720 -17.45376 -17.41644 -16.45009 -15.99866 -15.70175 -15.17491 -14.21251 -14.03293 -13.67484 -13.48011 -13.28367 -13.10911 -12.91476 -12.70684 -12.58850 -12.24698 -12.10023 -11.85332 -11.69272 -11.19812 -10.96616 -10.69159 -10.43231 -9.91420 -9.55988 -9.44019 -9.38771 -9.09607 -8.02568 -7.71942 -6.86826 -6.68588 -4.35517 1.19647 1.37455 2.66853 2.90991 3.04344 3.07193 3.11712 3.74993 3.87354 3.88673 4.03158 4.54011 4.71482 4.92138 5.04662 5.13408 5.47724 5.54974 5.61733 5.81548 5.86166 6.03580 6.09774 6.12465 6.30359 6.65655 6.74646 6.92063 6.95967 7.11684 7.29008 7.44728 7.59085 7.91043 7.94529 8.03154 8.18638 8.27940 8.51328 8.78680 8.85549 10.12072 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.028873 B = 0.004164 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.540699 B = 6722.230861 C = 7428.796368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.120 4.120 3 C -0.133 4.133 4 C 0.159 3.841 5 N -0.662 5.662 6 C 0.012 3.988 7 C -0.120 4.120 8 C -0.140 4.140 9 C 0.102 3.898 10 C -0.458 4.458 11 H 0.079 0.921 12 C 0.074 3.926 13 N -0.792 5.792 14 Si 0.910 3.090 15 H -0.268 1.268 16 H -0.277 1.277 17 H -0.262 1.262 18 C -0.205 4.205 19 C -0.110 4.110 20 C 0.085 3.915 21 N -0.476 5.476 22 C 0.231 3.769 23 F -0.124 7.124 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.138 0.862 28 H 0.398 0.602 29 H 0.090 0.910 30 H 0.120 0.880 31 H 0.282 0.718 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.119 1.970 -3.733 11.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.124 4.124 3 C -0.162 4.162 4 C 0.053 3.947 5 N -0.283 5.283 6 C -0.081 4.081 7 C -0.140 4.140 8 C -0.160 4.160 9 C 0.099 3.901 10 C -0.488 4.488 11 H 0.097 0.903 12 C -0.144 4.144 13 N -0.417 5.417 14 Si 0.734 3.266 15 H -0.193 1.193 16 H -0.202 1.202 17 H -0.186 1.186 18 C -0.226 4.226 19 C -0.131 4.131 20 C -0.078 4.078 21 N -0.189 5.189 22 C 0.077 3.923 23 F -0.104 7.104 24 H 0.092 0.908 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.156 0.844 28 H 0.233 0.767 29 H 0.108 0.892 30 H 0.138 0.862 31 H 0.093 0.907 32 H 0.115 0.885 33 H 0.109 0.891 34 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -10.562 0.833 -3.577 11.182 hybrid contribution 0.066 0.781 0.363 0.864 sum -10.495 1.614 -3.214 11.095 Atomic orbital electron populations 1.20663 0.89773 1.03311 1.02688 1.20301 0.97492 0.91802 1.02803 1.20945 0.92031 0.97889 1.05384 1.18840 0.90825 0.88867 0.96156 1.41497 1.17457 1.08979 1.60388 1.17146 0.85186 1.07903 0.97895 1.20331 0.97689 1.00897 0.95103 1.20946 0.91207 1.02702 1.01102 1.17642 0.92877 0.89964 0.89638 1.19537 1.01388 1.00230 1.27621 0.90318 1.25911 0.98185 0.94511 0.95798 1.69832 1.38111 1.00048 1.33760 0.86282 0.80815 0.78722 0.80758 1.19269 1.20249 1.18617 1.20611 0.96023 1.07070 0.98853 1.20066 0.93000 1.01060 0.98974 1.22489 1.00380 0.84824 1.00100 1.66899 1.06437 1.32856 1.12662 1.17727 0.87151 0.80790 1.06630 1.91525 1.77964 1.46670 1.94234 0.90804 0.91017 0.91001 0.84379 0.76658 0.89195 0.86187 0.90678 0.88514 0.89052 0.81244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 9.85 36.01 0.35 -0.70 16 2 C -0.12 -1.64 5.90 -104.43 -0.62 -2.25 16 3 C -0.13 -1.78 9.78 -39.08 -0.38 -2.17 16 4 C 0.16 2.56 5.89 -83.59 -0.49 2.07 16 5 N -0.66 -10.69 5.41 -8.20 -0.04 -10.74 16 6 C 0.01 0.24 5.84 -83.69 -0.49 -0.24 16 7 C -0.12 -2.64 7.97 -39.76 -0.32 -2.96 16 8 C -0.14 -3.44 8.61 -39.27 -0.34 -3.78 16 9 C 0.10 2.55 5.55 -106.80 -0.59 1.96 16 10 C -0.46 -11.60 9.03 -37.90 -0.34 -11.94 16 11 H 0.08 1.91 7.89 -52.48 -0.41 1.50 16 12 C 0.07 1.79 5.16 -17.34 -0.09 1.70 16 13 N -0.79 -19.93 10.99 55.54 0.61 -19.32 16 14 Si 0.91 18.13 29.59 -169.99 -5.03 13.10 16 15 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 16 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 17 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 18 C -0.21 -4.66 9.74 -39.27 -0.38 -5.04 16 19 C -0.11 -2.24 9.89 -39.76 -0.39 -2.63 16 20 C 0.09 1.56 9.24 -17.30 -0.16 1.40 16 21 N -0.48 -8.88 10.37 -13.42 -0.14 -9.02 16 22 C 0.23 3.83 8.36 -17.34 -0.14 3.69 16 23 F -0.12 -2.01 16.50 2.25 0.04 -1.97 16 24 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.07 0.70 7.65 -51.93 -0.40 0.30 16 26 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 27 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 28 H 0.40 5.29 8.92 -40.82 -0.36 4.93 16 29 H 0.09 1.93 6.84 -52.48 -0.36 1.57 16 30 H 0.12 3.10 6.27 -52.48 -0.33 2.77 16 31 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 32 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 33 H 0.09 1.59 8.06 -52.49 -0.42 1.17 16 34 H 0.17 3.34 6.78 -52.49 -0.36 2.99 16 LS Contribution 298.05 15.07 4.49 4.49 Total: -1.00 -26.67 298.05 -7.92 -34.59 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -3.47 Total: 9.75 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: -4.38 Total: -20.90 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: 0.43 Total: -39.07 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.03 Total: 13.10 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -26.67 -7.92 -34.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212186302.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.270 kcal (2) G-P(sol) polarization free energy of solvation -26.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds