Wall clock time and date at job start Mon Mar 30 2020 01:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38443 * 120.38419 * 2 1 4 4 C 1.39377 * 118.38064 * 180.02562 * 3 2 1 5 5 N 1.39737 * 120.46329 * 180.02562 * 4 3 2 6 6 C 1.38782 * 119.99929 * 149.68579 * 5 4 3 7 7 C 1.39612 * 119.84520 * 326.89785 * 6 5 4 8 8 C 1.36315 * 120.15692 * 180.27538 * 7 6 5 9 9 C 1.40897 * 119.83766 * 0.02562 * 8 7 6 10 10 C 1.41102 * 120.14867 * 179.97438 * 9 8 7 11 11 H 1.08003 * 120.00224 * 207.24262 * 10 9 8 12 12 C 1.39841 * 120.00428 * 27.24247 * 10 9 8 13 13 N 1.30920 * 119.99803 * 15.50026 * 12 10 9 14 14 Si 1.86793 * 120.00535 * 195.50218 * 12 10 9 15 15 H 1.48502 * 109.47144 * 89.99764 * 14 12 10 16 16 H 1.48498 * 109.47577 * 209.99807 * 14 12 10 17 17 H 1.48502 * 109.47115 * 330.00141 * 14 12 10 18 18 C 1.40902 * 119.69956 * 359.97438 * 9 8 7 19 19 C 1.36303 * 119.84234 * 359.97438 * 18 9 8 20 20 C 1.38885 * 119.06617 * 0.27154 * 4 3 2 21 21 N 1.31852 * 120.67950 * 359.43308 * 20 4 3 22 22 C 1.32052 * 121.77278 * 0.58556 * 21 20 4 23 23 F 1.35094 * 119.56225 * 179.72497 * 22 21 20 24 24 H 1.09001 * 109.47313 * 89.99943 * 1 2 3 25 25 H 1.09001 * 109.46649 * 210.00011 * 1 2 3 26 26 H 1.08994 * 109.47083 * 329.99483 * 1 2 3 27 27 H 1.08000 * 120.80785 * 0.02562 * 3 2 1 28 28 H 0.97000 * 120.00142 * 329.68515 * 5 4 3 29 29 H 1.08003 * 119.92233 * 0.24526 * 7 6 5 30 30 H 1.08005 * 120.07579 * 180.02562 * 8 7 6 31 31 H 0.97002 * 120.00467 * 180.02562 * 13 12 10 32 32 H 1.08000 * 120.07927 * 179.97438 * 18 9 8 33 33 H 1.07994 * 119.92598 * 180.02562 * 19 18 9 34 34 H 1.07997 * 119.65917 * 179.73040 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2073 1.1943 0.0000 4 6 3.6002 1.1456 -0.0005 5 7 4.3503 2.3245 0.0000 6 6 5.5984 2.3526 0.6062 7 6 5.8397 1.5690 1.7362 8 6 7.0616 1.5959 2.3400 9 6 8.0819 2.4176 1.8213 10 6 9.3489 2.4509 2.4414 11 1 9.9654 3.3343 2.3632 12 6 9.8066 1.3402 3.1572 13 7 9.2207 0.1789 3.0085 14 14 11.2537 1.5134 4.3256 15 1 10.7572 1.8696 5.6791 16 1 11.9929 0.2272 4.3922 17 1 12.1613 2.5812 3.8345 18 6 7.8313 3.2057 0.6805 19 6 6.6052 3.1683 0.0862 20 6 4.2321 -0.0912 -0.0068 21 7 3.5284 -1.2062 -0.0010 22 6 2.2079 -1.1951 -0.0005 23 9 1.5315 -2.3645 -0.0001 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8899 0.5139 27 1 1.6868 2.1406 0.0004 28 1 3.9987 3.1233 -0.4234 29 1 5.0564 0.9404 2.1332 30 1 7.2470 0.9889 3.2139 31 1 9.5379 -0.5916 3.5053 32 1 8.6088 3.8380 0.2780 33 1 6.4118 3.7715 -0.7884 34 1 5.3109 -0.1401 -0.0117 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212186302.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:07 Heat of formation + Delta-G solvation = -3.644567 kcal Electronic energy + Delta-G solvation = -19493.053709 eV Core-core repulsion = 16304.158641 eV Total energy + Delta-G solvation = -3188.895068 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.89563 -41.44282 -39.65762 -37.00735 -35.06203 -34.73558 -31.73984 -31.49466 -29.75494 -28.27231 -26.49882 -24.69520 -23.37069 -22.92284 -21.79702 -19.26445 -18.98774 -18.80046 -17.80784 -17.46054 -17.04466 -16.85261 -15.79105 -15.36157 -15.23354 -14.71620 -14.59645 -14.40943 -14.15679 -13.99686 -13.92573 -13.72857 -13.60816 -13.35942 -12.97455 -12.80710 -12.57252 -12.34196 -12.00842 -11.62907 -11.27675 -11.03477 -10.71978 -10.39074 -9.59679 -9.45975 -8.63453 -8.26624 -6.20613 -0.06317 0.14289 0.97778 1.12220 1.39584 1.51668 1.52517 2.21990 2.40575 2.57993 2.76919 2.78770 3.60419 3.72339 3.77637 3.85026 4.14992 4.34583 4.42123 4.45395 4.75006 4.79807 4.93170 5.00736 5.04582 5.10626 5.14751 5.18800 5.33997 5.50029 5.66877 5.71716 5.89257 6.08914 6.25832 6.47884 6.64338 6.72624 6.93137 6.96049 7.08771 8.36396 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.028873 B = 0.004164 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.540699 B = 6722.230861 C = 7428.796368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.106 4.106 3 C -0.109 4.109 4 C 0.154 3.846 5 N -0.654 5.654 6 C 0.042 3.958 7 C -0.126 4.126 8 C -0.161 4.161 9 C 0.067 3.933 10 C -0.497 4.497 11 H 0.078 0.922 12 C 0.033 3.967 13 N -0.832 5.832 14 Si 0.980 3.020 15 H -0.264 1.264 16 H -0.272 1.272 17 H -0.256 1.256 18 C -0.211 4.211 19 C -0.111 4.111 20 C 0.060 3.940 21 N -0.511 5.511 22 C 0.216 3.784 23 F -0.126 7.126 24 H 0.094 0.906 25 H 0.071 0.929 26 H 0.098 0.902 27 H 0.183 0.817 28 H 0.419 0.581 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.285 0.715 32 H 0.106 0.894 33 H 0.130 0.870 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.706 3.606 -4.676 14.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.110 4.110 3 C -0.138 4.138 4 C 0.049 3.951 5 N -0.278 5.278 6 C -0.053 4.053 7 C -0.147 4.147 8 C -0.181 4.181 9 C 0.065 3.935 10 C -0.527 4.527 11 H 0.096 0.904 12 C -0.181 4.181 13 N -0.459 5.459 14 Si 0.801 3.199 15 H -0.189 1.189 16 H -0.197 1.197 17 H -0.180 1.180 18 C -0.231 4.231 19 C -0.132 4.132 20 C -0.101 4.101 21 N -0.224 5.224 22 C 0.061 3.939 23 F -0.105 7.105 24 H 0.112 0.888 25 H 0.090 0.910 26 H 0.117 0.883 27 H 0.200 0.800 28 H 0.257 0.743 29 H 0.108 0.892 30 H 0.114 0.886 31 H 0.096 0.904 32 H 0.124 0.876 33 H 0.148 0.852 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -13.182 2.485 -4.548 14.164 hybrid contribution 0.558 0.217 0.504 0.782 sum -12.624 2.701 -4.045 13.528 Atomic orbital electron populations 1.20812 0.86399 1.04728 1.04374 1.20748 0.99708 0.90415 1.00126 1.21384 0.90560 0.99605 1.02295 1.18866 0.92042 0.87740 0.96468 1.41271 1.16131 1.09961 1.60482 1.17147 0.86569 1.05348 0.96226 1.20347 0.96828 1.01537 0.95950 1.20826 0.92518 1.03495 1.01304 1.17940 0.93208 0.91304 0.91075 1.19766 1.02107 1.00885 1.29899 0.90400 1.26710 1.00760 0.93785 0.96843 1.69913 1.40077 1.00783 1.35140 0.85230 0.77467 0.78796 0.78404 1.18871 1.19703 1.17970 1.20843 0.97475 1.06596 0.98236 1.20384 0.91906 1.01186 0.99699 1.22129 0.99384 0.86040 1.02590 1.66716 1.08059 1.33708 1.13916 1.18135 0.86817 0.81931 1.07018 1.91521 1.77728 1.47021 1.94278 0.88771 0.90985 0.88293 0.79996 0.74272 0.89180 0.88613 0.90429 0.87576 0.85216 0.84113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.56 9.85 71.24 0.70 -0.86 16 2 C -0.11 -2.51 5.90 -19.74 -0.12 -2.62 16 3 C -0.11 -2.46 9.78 22.59 0.22 -2.23 16 4 C 0.15 4.59 5.89 38.31 0.23 4.82 16 5 N -0.65 -19.22 5.41 -179.85 -0.97 -20.20 16 6 C 0.04 1.63 5.84 38.71 0.23 1.85 16 7 C -0.13 -5.68 7.97 22.15 0.18 -5.50 16 8 C -0.16 -8.36 8.61 22.47 0.19 -8.17 16 9 C 0.07 3.52 5.55 -21.27 -0.12 3.40 16 10 C -0.50 -26.29 9.03 23.36 0.21 -26.08 16 11 H 0.08 3.94 7.89 -2.91 -0.02 3.92 16 12 C 0.03 1.66 5.16 85.22 0.44 2.10 16 13 N -0.83 -44.28 10.99 21.81 0.24 -44.04 16 14 Si 0.98 38.41 29.59 68.60 2.03 40.44 16 15 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 16 H -0.27 -10.30 7.11 99.48 0.71 -9.60 16 17 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 18 C -0.21 -9.63 9.74 22.47 0.22 -9.41 16 19 C -0.11 -4.32 9.89 22.15 0.22 -4.10 16 20 C 0.06 2.22 9.24 84.84 0.78 3.00 16 21 N -0.51 -19.22 10.37 -196.36 -2.04 -21.26 16 22 C 0.22 6.86 8.36 84.73 0.71 7.57 16 23 F -0.13 -3.92 16.50 44.97 0.74 -3.18 16 24 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.07 1.11 7.65 -2.39 -0.02 1.09 16 26 H 0.10 1.00 8.09 -2.39 -0.02 0.98 16 27 H 0.18 2.56 8.06 -2.91 -0.02 2.53 16 28 H 0.42 9.22 8.92 -92.71 -0.83 8.39 16 29 H 0.09 3.98 6.84 -2.91 -0.02 3.96 16 30 H 0.10 5.34 6.27 -2.91 -0.02 5.32 16 31 H 0.29 13.92 8.30 -92.71 -0.77 13.15 16 32 H 0.11 4.52 8.06 -2.91 -0.02 4.50 16 33 H 0.13 4.04 8.06 -2.91 -0.02 4.01 16 34 H 0.14 5.87 6.78 -2.91 -0.02 5.85 16 Total: -1.00 -62.01 298.05 4.41 -57.60 By element: Atomic # 1 Polarization: 26.56 SS G_CDS: 0.32 Total: 26.88 kcal Atomic # 6 Polarization: -40.33 SS G_CDS: 4.09 Total: -36.24 kcal Atomic # 7 Polarization: -82.72 SS G_CDS: -2.77 Total: -85.49 kcal Atomic # 9 Polarization: -3.92 SS G_CDS: 0.74 Total: -3.18 kcal Atomic # 14 Polarization: 38.41 SS G_CDS: 2.03 Total: 40.44 kcal Total: -62.01 4.41 -57.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212186302.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.952 kcal (2) G-P(sol) polarization free energy of solvation -62.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds