Wall clock time and date at job start Mon Mar 30 2020 01:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38440 * 120.38736 * 2 1 4 4 C 1.39379 * 118.38074 * 180.21844 * 3 2 1 5 5 N 1.39730 * 120.46476 * 179.78520 * 4 3 2 6 6 C 1.38657 * 119.99935 * 192.96844 * 5 4 3 7 7 C 1.38820 * 120.29923 * 253.55410 * 6 5 4 8 8 C 1.38105 * 120.02398 * 180.27364 * 7 6 5 9 9 C 1.38934 * 120.63665 * 359.72079 * 8 7 6 10 10 C 1.36430 * 120.60351 * 359.97438 * 9 8 7 11 11 C 1.40741 * 119.95784 * 0.02562 * 10 9 8 12 12 C 1.41000 * 120.31342 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00081 * 207.25101 * 12 11 10 14 14 C 1.39909 * 120.00303 * 27.24011 * 12 11 10 15 15 N 1.30882 * 120.00214 * 203.48322 * 14 12 11 16 16 Si 1.86803 * 119.99607 * 23.48655 * 14 12 11 17 17 H 1.48497 * 109.46995 * 263.07534 * 16 14 12 18 18 H 1.48508 * 109.46915 * 23.07395 * 16 14 12 19 19 H 1.48497 * 109.47009 * 143.07551 * 16 14 12 20 20 C 1.38880 * 119.06585 * 359.51309 * 4 3 2 21 21 N 1.31854 * 120.68359 * 0.24570 * 20 4 3 22 22 C 1.32048 * 121.76639 * 0.02562 * 21 20 4 23 23 F 1.35106 * 119.55755 * 179.97438 * 22 21 20 24 24 H 1.09000 * 109.46902 * 270.27358 * 1 2 3 25 25 H 1.08995 * 109.47183 * 30.27828 * 1 2 3 26 26 H 1.09002 * 109.46784 * 150.27745 * 1 2 3 27 27 H 1.08001 * 120.80875 * 0.02562 * 3 2 1 28 28 H 0.96999 * 120.00440 * 12.95730 * 5 4 3 29 29 H 1.08002 * 119.98831 * 359.97438 * 7 6 5 30 30 H 1.07999 * 119.68381 * 179.74237 * 8 7 6 31 31 H 1.07993 * 119.70315 * 180.02562 * 9 8 7 32 32 H 1.08004 * 120.02162 * 180.02562 * 10 9 8 33 33 H 0.96999 * 120.00368 * 355.03274 * 15 14 12 34 34 H 1.08002 * 119.66253 * 180.27526 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2073 1.1942 0.0000 4 6 3.6002 1.1454 -0.0047 5 7 4.3504 2.3243 -0.0094 6 6 5.7089 2.2804 -0.2834 7 6 6.6350 2.4586 0.7353 8 6 7.9867 2.4194 0.4549 9 6 8.4348 2.1968 -0.8412 10 6 7.5474 2.0123 -1.8608 11 6 6.1641 2.0472 -1.6036 12 6 5.2403 1.8569 -2.6517 13 1 4.2552 2.2954 -2.5895 14 6 5.5997 1.1003 -3.7723 15 7 4.9804 1.2823 -4.9109 16 14 6.9635 -0.1697 -3.6433 17 1 8.2376 0.4215 -4.1253 18 1 7.1170 -0.5892 -2.2270 19 1 6.6201 -1.3510 -4.4751 20 6 4.2320 -0.0913 0.0012 21 7 3.5283 -1.2064 0.0062 22 6 2.2079 -1.1951 0.0053 23 9 1.5314 -2.3646 0.0100 24 1 -0.3633 0.0049 1.0277 25 1 -0.3633 0.8874 -0.5181 26 1 -0.3633 -0.8925 -0.5095 27 1 1.6869 2.1406 0.0004 28 1 3.9208 3.1733 0.1789 29 1 6.2982 2.6327 1.7466 30 1 8.7024 2.5629 1.2510 31 1 9.4953 2.1688 -1.0433 32 1 7.9061 1.8396 -2.8648 33 1 4.2252 1.8889 -4.9607 34 1 5.3109 -0.1404 0.0021 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212188596.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:09 Heat of formation + Delta-G solvation = 7.227743 kcal Electronic energy + Delta-G solvation = -20370.860281 eV Core-core repulsion = 17182.436672 eV Total energy + Delta-G solvation = -3188.423609 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.38472 -39.86492 -38.14864 -34.99859 -33.88809 -33.39515 -30.37996 -30.20064 -27.62074 -26.97540 -24.78614 -23.13183 -21.96566 -21.43128 -19.99858 -18.28013 -17.51623 -17.32581 -16.40403 -15.75191 -15.56097 -14.73383 -14.56698 -14.02636 -13.88564 -13.31782 -13.22380 -13.10186 -12.81203 -12.75154 -12.48497 -12.40701 -12.23833 -11.76442 -11.50685 -11.09629 -10.71213 -10.65178 -10.18741 -9.84304 -9.62095 -9.21586 -9.16034 -8.90590 -7.90229 -7.88918 -7.44400 -6.85808 -4.68170 1.49272 1.71861 2.40568 2.56803 3.13333 3.32020 3.47566 3.91923 3.96188 4.18432 4.28156 4.39812 4.92868 5.15796 5.20819 5.29557 5.35973 5.64636 5.81106 5.87545 5.97863 6.01132 6.06269 6.29618 6.34649 6.52120 6.54293 6.76341 6.98424 7.11585 7.28043 7.41980 7.49200 7.66840 7.77440 7.95257 8.08804 8.28973 8.35813 8.48379 8.69202 9.83790 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.017145 B = 0.007542 C = 0.006332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.779783 B = 3711.740089 C = 4420.976986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.114 4.114 3 C -0.147 4.147 4 C 0.192 3.808 5 N -0.653 5.653 6 C -0.008 4.008 7 C -0.069 4.069 8 C -0.248 4.248 9 C -0.070 4.070 10 C -0.231 4.231 11 C 0.097 3.903 12 C -0.494 4.494 13 H 0.078 0.922 14 C 0.046 3.954 15 N -0.800 5.800 16 Si 1.065 2.935 17 H -0.276 1.276 18 H -0.258 1.258 19 H -0.287 1.287 20 C 0.083 3.917 21 N -0.473 5.473 22 C 0.219 3.781 23 F -0.128 7.128 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.134 0.866 28 H 0.394 0.606 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.288 0.712 34 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.911 0.856 7.472 8.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.118 4.118 3 C -0.177 4.177 4 C 0.084 3.916 5 N -0.274 5.274 6 C -0.102 4.102 7 C -0.089 4.089 8 C -0.268 4.268 9 C -0.088 4.088 10 C -0.250 4.250 11 C 0.092 3.908 12 C -0.522 4.522 13 H 0.096 0.904 14 C -0.176 4.176 15 N -0.421 5.421 16 Si 0.890 3.110 17 H -0.202 1.202 18 H -0.182 1.182 19 H -0.214 1.214 20 C -0.081 4.081 21 N -0.186 5.186 22 C 0.065 3.935 23 F -0.108 7.108 24 H 0.090 0.910 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.152 0.848 28 H 0.229 0.771 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.122 0.878 33 H 0.099 0.901 34 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -2.568 -1.060 6.463 7.035 hybrid contribution -1.640 2.185 0.683 2.816 sum -4.208 1.126 7.146 8.369 Atomic orbital electron populations 1.20641 0.90044 1.03188 1.02419 1.20208 0.97243 0.91845 1.02508 1.20726 0.91862 0.97761 1.07343 1.18897 0.90665 0.89068 0.92933 1.41053 1.06554 1.04812 1.74971 1.17235 0.81504 1.19278 0.92171 1.20832 0.93154 0.98415 0.96461 1.20213 0.94337 1.16111 0.96103 1.20431 0.97736 0.97424 0.93250 1.20739 0.93234 1.12875 0.98157 1.17892 0.92130 0.89556 0.91182 1.20469 1.01299 1.28535 1.01860 0.90390 1.27322 1.01512 0.98191 0.90550 1.70557 1.16098 1.30411 1.25022 0.83692 0.74094 0.75042 0.78183 1.20224 1.18219 1.21378 1.22087 0.99873 0.84725 1.01436 1.66810 1.06490 1.32873 1.12397 1.17622 0.87131 0.80673 1.08104 1.91504 1.78028 1.46761 1.94467 0.90993 0.91162 0.91125 0.84775 0.77067 0.88629 0.88630 0.88629 0.87833 0.90066 0.81898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.29 9.85 36.01 0.35 -0.93 16 2 C -0.11 -1.86 5.90 -104.43 -0.62 -2.48 16 3 C -0.15 -2.39 9.74 -39.08 -0.38 -2.77 16 4 C 0.19 3.59 6.00 -83.60 -0.50 3.09 16 5 N -0.65 -11.93 4.75 -7.94 -0.04 -11.97 16 6 C -0.01 -0.18 4.55 -83.29 -0.38 -0.55 16 7 C -0.07 -1.32 9.96 -39.41 -0.39 -1.71 16 8 C -0.25 -4.72 10.03 -39.37 -0.40 -5.12 16 9 C -0.07 -1.40 9.97 -39.98 -0.40 -1.80 16 10 C -0.23 -5.17 7.29 -39.29 -0.29 -5.46 16 11 C 0.10 2.26 5.00 -106.63 -0.53 1.73 16 12 C -0.49 -12.35 8.49 -37.91 -0.32 -12.67 16 13 H 0.08 2.04 7.79 -52.49 -0.41 1.64 16 14 C 0.05 1.17 5.33 -17.33 -0.09 1.08 16 15 N -0.80 -20.89 13.66 55.55 0.76 -20.13 16 16 Si 1.06 23.97 25.01 -169.99 -4.25 19.72 16 17 H -0.28 -5.83 6.71 56.52 0.38 -5.45 16 18 H -0.26 -5.77 7.01 56.52 0.40 -5.37 16 19 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 20 C 0.08 1.71 10.41 -17.30 -0.18 1.53 16 21 N -0.47 -9.93 10.37 -13.41 -0.14 -10.07 16 22 C 0.22 4.17 8.36 -17.34 -0.14 4.03 16 23 F -0.13 -2.34 16.50 2.25 0.04 -2.30 16 24 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 26 H 0.07 0.85 7.65 -51.93 -0.40 0.45 16 27 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 28 H 0.39 6.16 8.87 -40.82 -0.36 5.80 16 29 H 0.10 1.63 8.06 -52.49 -0.42 1.20 16 30 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 31 H 0.10 1.66 8.06 -52.49 -0.42 1.23 16 32 H 0.10 2.34 4.81 -52.48 -0.25 2.08 16 33 H 0.29 7.32 8.73 -40.82 -0.36 6.97 16 34 H 0.16 3.53 7.05 -52.49 -0.37 3.16 16 LS Contribution 295.35 15.07 4.45 4.45 Total: -1.00 -26.51 295.35 -6.95 -33.46 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -3.50 Total: 8.87 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: -4.27 Total: -22.03 kcal Atomic # 7 Polarization: -42.75 SS G_CDS: 0.58 Total: -42.17 kcal Atomic # 9 Polarization: -2.34 SS G_CDS: 0.04 Total: -2.30 kcal Atomic # 14 Polarization: 23.97 SS G_CDS: -4.25 Total: 19.72 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -26.51 -6.95 -33.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212188596.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.687 kcal (2) G-P(sol) polarization free energy of solvation -26.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds