Wall clock time and date at job start Mon Mar 30 2020 01:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38454 * 120.38789 * 2 1 4 4 C 1.39327 * 118.38518 * 179.73744 * 3 2 1 5 5 N 1.39879 * 120.46134 * 180.23925 * 4 3 2 6 6 C 1.39712 * 120.00308 * 31.53917 * 5 4 3 7 7 C 1.39357 * 119.95426 * 206.35011 * 6 5 4 8 8 C 1.38466 * 120.41893 * 179.76264 * 7 6 5 9 9 C 1.37692 * 120.33161 * 0.52090 * 8 7 6 10 10 C 1.40759 * 119.89276 * 359.73609 * 9 8 7 11 11 C 1.41407 * 120.20397 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00102 * 205.45375 * 11 10 9 13 13 C 1.39928 * 119.99878 * 25.46137 * 11 10 9 14 14 N 1.30829 * 120.00328 * 16.49338 * 13 11 10 15 15 Si 1.86804 * 119.99815 * 196.48947 * 13 11 10 16 16 H 1.48498 * 109.47262 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.46880 * 120.00502 * 15 13 11 18 18 H 1.48503 * 109.47102 * 240.00252 * 15 13 11 19 19 C 1.38300 * 119.95286 * 26.63178 * 6 5 4 20 20 C 1.38824 * 119.06969 * 0.50733 * 4 3 2 21 21 N 1.31867 * 120.69323 * 359.75391 * 20 4 3 22 22 C 1.32030 * 121.76397 * 359.97438 * 21 20 4 23 23 F 1.35099 * 119.56679 * 179.97438 * 22 21 20 24 24 H 1.08997 * 109.47768 * 269.72541 * 1 2 3 25 25 H 1.09001 * 109.47303 * 149.72529 * 1 2 3 26 26 H 1.08996 * 109.47274 * 29.73073 * 1 2 3 27 27 H 1.08004 * 120.81130 * 359.96849 * 3 2 1 28 28 H 0.97004 * 120.00174 * 211.53815 * 5 4 3 29 29 H 1.08001 * 119.78787 * 0.02603 * 7 6 5 30 30 H 1.08008 * 119.83206 * 180.24214 * 8 7 6 31 31 H 1.08000 * 120.05382 * 179.72649 * 9 8 7 32 32 H 0.96994 * 120.00485 * 179.97438 * 14 13 11 33 33 H 1.07999 * 120.15812 * 359.95393 * 19 6 5 34 34 H 1.08001 * 119.65211 * 179.77353 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2074 1.1943 0.0000 4 6 3.5998 1.1456 0.0056 5 7 4.3506 2.3258 0.0109 6 6 3.8529 3.4676 0.6438 7 6 4.2636 4.7312 0.2233 8 6 3.7728 5.8693 0.8405 9 6 2.8811 5.7646 1.8845 10 6 2.4612 4.4950 2.3238 11 6 1.5461 4.3797 3.3956 12 1 1.5295 3.4832 3.9975 13 6 0.6619 5.4273 3.6763 14 7 0.4472 6.3592 2.7835 15 14 -0.2120 5.4953 5.3259 16 1 0.2003 4.3327 6.1528 17 1 0.1501 6.7536 6.0264 18 1 -1.6807 5.4539 5.1101 19 6 2.9579 3.3421 1.6907 20 6 4.2315 -0.0905 0.0002 21 7 3.5281 -1.2059 -0.0052 22 6 2.2078 -1.1950 -0.0052 23 9 1.5315 -2.3644 -0.0114 24 1 -0.3634 -0.0049 1.0276 25 1 -0.3634 -0.8875 -0.5181 26 1 -0.3633 0.8923 -0.5096 27 1 1.6870 2.1408 -0.0005 28 1 5.2168 2.3516 -0.4249 29 1 4.9659 4.8233 -0.5920 30 1 4.0945 6.8440 0.5044 31 1 2.5045 6.6552 2.3655 32 1 -0.1659 7.0852 2.9779 33 1 2.6419 2.3633 2.0200 34 1 5.3104 -0.1392 0.0008 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212191169.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:11 Heat of formation + Delta-G solvation = -4.856765 kcal Electronic energy + Delta-G solvation = -19799.299439 eV Core-core repulsion = 16610.351806 eV Total energy + Delta-G solvation = -3188.947633 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.94207 -41.48180 -39.57228 -36.95046 -35.13617 -34.80180 -31.92020 -31.28822 -29.23653 -28.20086 -27.15037 -24.62576 -23.59948 -22.57305 -21.90667 -19.54967 -18.99574 -18.56912 -17.64022 -17.35821 -17.08612 -16.45488 -16.40506 -15.35992 -15.17221 -14.83575 -14.69560 -14.50389 -14.20713 -14.09596 -13.97013 -13.72740 -13.54466 -13.15181 -12.93772 -12.81200 -12.60674 -12.21628 -11.87690 -11.79556 -11.33840 -11.03612 -10.80741 -10.43013 -9.63746 -9.38991 -8.64281 -8.11034 -6.37104 -0.11374 0.07276 0.97926 1.19723 1.38947 1.51128 1.52954 2.19989 2.29577 2.56219 2.69043 2.76273 3.54554 3.72770 3.77464 3.80313 4.01241 4.41148 4.49131 4.64010 4.66865 4.68512 4.92537 5.03312 5.05800 5.08460 5.11041 5.20721 5.24291 5.38901 5.59734 5.85742 5.97977 6.12754 6.21128 6.39973 6.61309 6.70885 6.89085 6.97030 7.05530 8.33289 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.017459 B = 0.005686 C = 0.004592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.416272 B = 4923.616329 C = 6096.105942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.118 4.118 3 C -0.106 4.106 4 C 0.144 3.856 5 N -0.667 5.667 6 C 0.193 3.807 7 C -0.268 4.268 8 C -0.083 4.083 9 C -0.208 4.208 10 C 0.104 3.896 11 C -0.497 4.497 12 H 0.069 0.931 13 C 0.041 3.959 14 N -0.821 5.821 15 Si 0.975 3.025 16 H -0.262 1.262 17 H -0.263 1.263 18 H -0.265 1.265 19 C -0.271 4.271 20 C 0.078 3.922 21 N -0.497 5.497 22 C 0.237 3.763 23 F -0.120 7.120 24 H 0.081 0.919 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.135 0.865 28 H 0.421 0.579 29 H 0.124 0.876 30 H 0.116 0.884 31 H 0.100 0.900 32 H 0.288 0.712 33 H 0.089 0.911 34 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.459 -6.475 -4.854 8.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.122 4.122 3 C -0.135 4.135 4 C 0.041 3.959 5 N -0.292 5.292 6 C 0.097 3.903 7 C -0.289 4.289 8 C -0.101 4.101 9 C -0.228 4.228 10 C 0.101 3.899 11 C -0.526 4.526 12 H 0.087 0.913 13 C -0.175 4.175 14 N -0.447 5.447 15 Si 0.796 3.204 16 H -0.186 1.186 17 H -0.188 1.188 18 H -0.190 1.190 19 C -0.294 4.294 20 C -0.083 4.083 21 N -0.210 5.210 22 C 0.082 3.918 23 F -0.100 7.100 24 H 0.100 0.900 25 H 0.105 0.895 26 H 0.099 0.901 27 H 0.153 0.847 28 H 0.260 0.740 29 H 0.142 0.858 30 H 0.134 0.866 31 H 0.118 0.882 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 2.638 -7.079 -4.867 8.987 hybrid contribution -0.731 0.824 0.597 1.253 sum 1.907 -6.256 -4.270 7.811 Atomic orbital electron populations 1.20781 0.87767 1.04411 1.03804 1.20625 0.99334 0.90880 1.01327 1.21404 0.93231 0.98423 1.00451 1.18888 0.91494 0.88180 0.97311 1.41852 1.21651 1.06519 1.59138 1.17444 0.95365 0.85947 0.91543 1.20342 1.11155 0.90347 1.07097 1.20786 0.96162 0.97623 0.95573 1.21269 1.02147 0.97535 1.01831 1.17711 0.89884 0.91465 0.90870 1.19772 1.16627 1.02603 1.13641 0.91314 1.26629 0.96334 0.93643 1.00850 1.69866 1.29326 1.10998 1.34479 0.85270 0.78106 0.79414 0.77640 1.18591 1.18791 1.18975 1.20709 1.10026 0.97108 1.01546 1.22528 1.00877 0.83844 1.01047 1.66851 1.06888 1.33049 1.14197 1.17854 0.87203 0.81079 1.05683 1.91537 1.77974 1.46383 1.94084 0.90000 0.89476 0.90051 0.84720 0.74005 0.85788 0.86622 0.88203 0.90127 0.89335 0.78770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.78 9.85 71.24 0.70 -2.08 16 2 C -0.12 -3.59 5.90 -19.74 -0.12 -3.71 16 3 C -0.11 -3.54 7.58 22.58 0.17 -3.37 16 4 C 0.14 4.44 5.92 38.26 0.23 4.67 16 5 N -0.67 -20.34 5.48 -180.30 -0.99 -21.32 16 6 C 0.19 7.61 6.05 38.17 0.23 7.84 16 7 C -0.27 -10.35 9.95 22.59 0.22 -10.13 16 8 C -0.08 -3.54 10.01 22.19 0.22 -3.32 16 9 C -0.21 -10.43 8.69 22.76 0.20 -10.24 16 10 C 0.10 5.39 5.57 -21.31 -0.12 5.27 16 11 C -0.50 -26.25 9.05 23.46 0.21 -26.04 16 12 H 0.07 3.59 7.90 -2.91 -0.02 3.57 16 13 C 0.04 2.01 5.16 85.25 0.44 2.45 16 14 N -0.82 -41.64 10.94 21.82 0.24 -41.41 16 15 Si 0.97 37.58 29.59 68.60 2.03 39.61 16 16 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 17 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 18 H -0.27 -9.76 7.11 99.48 0.71 -9.05 16 19 C -0.27 -12.59 7.66 22.86 0.17 -12.42 16 20 C 0.08 2.15 11.11 84.83 0.94 3.09 16 21 N -0.50 -15.55 10.37 -196.42 -2.04 -17.58 16 22 C 0.24 7.46 8.36 84.73 0.71 8.17 16 23 F -0.12 -3.67 16.50 44.97 0.74 -2.93 16 24 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.09 1.88 7.65 -2.39 -0.02 1.86 16 26 H 0.08 1.95 8.09 -2.39 -0.02 1.93 16 27 H 0.13 5.05 6.72 -2.91 -0.02 5.03 16 28 H 0.42 9.80 8.90 -92.71 -0.83 8.97 16 29 H 0.12 3.94 8.06 -2.91 -0.02 3.92 16 30 H 0.12 4.30 8.06 -2.91 -0.02 4.28 16 31 H 0.10 5.30 6.17 -2.91 -0.02 5.28 16 32 H 0.29 13.17 8.30 -92.71 -0.77 12.40 16 33 H 0.09 4.14 6.39 -2.91 -0.02 4.13 16 34 H 0.20 3.87 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -58.18 297.49 4.53 -53.66 By element: Atomic # 1 Polarization: 29.46 SS G_CDS: 0.32 Total: 29.78 kcal Atomic # 6 Polarization: -44.03 SS G_CDS: 4.22 Total: -39.81 kcal Atomic # 7 Polarization: -77.53 SS G_CDS: -2.78 Total: -80.31 kcal Atomic # 9 Polarization: -3.67 SS G_CDS: 0.74 Total: -2.93 kcal Atomic # 14 Polarization: 37.58 SS G_CDS: 2.03 Total: 39.61 kcal Total: -58.18 4.53 -53.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212191169.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.798 kcal (2) G-P(sol) polarization free energy of solvation -58.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds