Wall clock time and date at job start Mon Mar 30 2020 01:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38638 * 120.81281 * 2 1 4 4 C 1.38136 * 119.30723 * 179.97438 * 3 2 1 5 5 N 1.31993 * 120.96364 * 359.72646 * 4 3 2 6 6 C 1.31914 * 121.76594 * 0.56442 * 5 4 3 7 7 F 1.35101 * 119.70268 * 179.70691 * 6 5 4 8 8 C 1.39177 * 120.81095 * 179.97438 * 2 1 3 9 9 N 1.39726 * 120.50273 * 359.97438 * 8 2 1 10 10 C 1.38642 * 120.00063 * 97.65224 * 9 8 2 11 11 C 1.38823 * 120.29865 * 5.58247 * 10 9 8 12 12 C 1.38113 * 120.01920 * 179.97438 * 11 10 9 13 13 C 1.38930 * 120.63846 * 0.02562 * 12 11 10 14 14 C 1.36427 * 120.60784 * 359.97438 * 13 12 11 15 15 C 1.40739 * 119.95464 * 359.72329 * 14 13 12 16 16 C 1.41003 * 120.31656 * 180.27255 * 15 14 13 17 17 H 1.08000 * 120.00445 * 207.38656 * 16 15 14 18 18 C 1.39906 * 119.99532 * 27.38079 * 16 15 14 19 19 N 1.30887 * 120.00033 * 13.52385 * 18 16 15 20 20 Si 1.86802 * 119.99852 * 193.52146 * 18 16 15 21 21 H 1.48498 * 109.46970 * 90.00299 * 20 18 16 22 22 H 1.48504 * 109.46906 * 210.00098 * 20 18 16 23 23 H 1.48495 * 109.47141 * 330.00094 * 20 18 16 24 24 H 1.09007 * 109.46940 * 270.01873 * 1 2 3 25 25 H 1.09006 * 109.47231 * 30.01385 * 1 2 3 26 26 H 1.08994 * 109.47449 * 150.02095 * 1 2 3 27 27 H 1.08000 * 120.34708 * 359.96485 * 3 2 1 28 28 H 1.07992 * 119.51779 * 180.02562 * 4 3 2 29 29 H 0.97003 * 120.00096 * 277.65532 * 9 8 2 30 30 H 1.08001 * 119.99018 * 359.97438 * 11 10 9 31 31 H 1.08003 * 119.67968 * 180.02562 * 12 11 10 32 32 H 1.07997 * 119.70162 * 179.97438 * 13 12 11 33 33 H 1.08000 * 120.01933 * 180.02562 * 14 13 12 34 34 H 0.97008 * 119.99758 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2171 1.1907 0.0000 4 6 3.5980 1.1544 0.0005 5 7 4.2471 0.0051 0.0065 6 6 3.6121 -1.1511 0.0010 7 9 4.3185 -2.3028 0.0014 8 6 2.2198 -1.1953 0.0005 9 7 1.5491 -2.4211 0.0016 10 6 1.3561 -3.1068 -1.1878 11 6 1.9254 -2.6409 -2.3651 12 6 1.7299 -3.3288 -3.5467 13 6 0.9653 -4.4885 -3.5725 14 6 0.3939 -4.9694 -2.4308 15 6 0.5820 -4.2920 -1.2116 16 6 -0.0003 -4.7855 -0.0260 17 1 -0.2470 -4.1072 0.7774 18 6 -0.2585 -6.1538 0.1095 19 7 0.2701 -7.0060 -0.7317 20 14 -1.3576 -6.7645 1.4909 21 1 -2.7669 -6.7979 1.0241 22 1 -0.9363 -8.1311 1.8913 23 1 -1.2433 -5.8502 2.6554 24 1 -0.3633 0.0003 1.0277 25 1 -0.3634 0.8899 -0.5141 26 1 -0.3634 -0.8901 -0.5135 27 1 1.6961 2.1367 -0.0006 28 1 4.1545 2.0798 0.0010 29 1 1.2184 -2.7923 0.8346 30 1 2.5213 -1.7402 -2.3571 31 1 2.1756 -2.9616 -4.4593 32 1 0.8219 -5.0142 -4.5050 33 1 -0.1982 -5.8721 -2.4618 34 1 0.0914 -7.9548 -0.6375 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212559196.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:46 Heat of formation + Delta-G solvation = 1.383052 kcal Electronic energy + Delta-G solvation = -20387.913838 eV Core-core repulsion = 17199.236784 eV Total energy + Delta-G solvation = -3188.677054 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.99232 -41.36664 -39.65126 -36.67193 -35.42660 -34.31947 -31.80790 -31.01127 -29.52689 -28.47130 -26.97663 -24.37642 -23.29095 -22.70218 -21.86429 -19.17748 -18.54215 -18.45414 -18.22217 -17.78527 -16.97922 -16.62967 -15.95680 -15.69901 -14.96369 -14.76557 -14.69406 -14.41125 -14.28107 -14.05929 -13.67413 -13.53963 -13.50203 -13.11422 -12.85916 -12.74239 -12.72213 -12.14827 -11.55065 -11.42644 -11.35651 -11.02835 -10.52929 -10.44862 -9.84732 -9.30139 -8.59310 -8.21578 -6.13812 -0.11617 0.08464 1.00358 1.22552 1.40459 1.51882 1.53570 2.24039 2.47860 2.58965 2.76544 2.85649 3.52242 3.75592 3.81328 4.11816 4.29113 4.39339 4.56275 4.59559 4.69995 4.76001 4.81731 4.84233 5.09921 5.17616 5.27593 5.33540 5.38699 5.50074 5.66179 5.81691 5.95167 6.24228 6.30752 6.53024 6.64921 6.84073 6.92990 7.11273 7.17784 8.45767 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.019728 B = 0.006315 C = 0.005712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.931049 B = 4432.693740 C = 4900.455169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.027 4.027 3 C -0.160 4.160 4 C 0.128 3.872 5 N -0.539 5.539 6 C 0.268 3.732 7 F -0.131 7.131 8 C 0.077 3.923 9 N -0.689 5.689 10 C 0.109 3.891 11 C -0.170 4.170 12 C -0.196 4.196 13 C -0.150 4.150 14 C -0.158 4.158 15 C 0.043 3.957 16 C -0.488 4.488 17 H 0.079 0.921 18 C 0.032 3.968 19 N -0.839 5.839 20 Si 0.979 3.021 21 H -0.265 1.265 22 H -0.277 1.277 23 H -0.257 1.257 24 H 0.092 0.908 25 H 0.102 0.898 26 H 0.051 0.949 27 H 0.190 0.810 28 H 0.210 0.790 29 H 0.405 0.595 30 H 0.089 0.911 31 H 0.112 0.888 32 H 0.105 0.895 33 H 0.103 0.897 34 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.777 14.754 3.378 15.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.037 4.037 3 C -0.179 4.179 4 C -0.028 4.028 5 N -0.255 5.255 6 C 0.114 3.886 7 F -0.110 7.110 8 C -0.021 4.021 9 N -0.321 5.321 10 C 0.011 3.989 11 C -0.193 4.193 12 C -0.215 4.215 13 C -0.169 4.169 14 C -0.179 4.179 15 C 0.039 3.961 16 C -0.519 4.519 17 H 0.097 0.903 18 C -0.181 4.181 19 N -0.467 5.467 20 Si 0.801 3.199 21 H -0.189 1.189 22 H -0.202 1.202 23 H -0.181 1.181 24 H 0.111 0.889 25 H 0.120 0.880 26 H 0.070 0.930 27 H 0.207 0.793 28 H 0.226 0.774 29 H 0.244 0.756 30 H 0.107 0.893 31 H 0.130 0.870 32 H 0.123 0.877 33 H 0.121 0.879 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.238 14.537 3.280 14.904 hybrid contribution -0.829 -1.454 0.608 1.781 sum -0.590 13.082 3.888 13.660 Atomic orbital electron populations 1.20787 0.88112 1.03925 1.03853 1.21077 0.98621 0.91232 0.92754 1.22493 0.94849 0.99270 1.01330 1.23280 0.92655 0.94408 0.92483 1.67025 1.43106 0.98208 1.17166 1.19228 0.87241 0.81955 1.00167 1.91559 1.79730 1.46356 1.93400 1.18315 0.88913 0.88642 1.06185 1.40996 1.64335 1.19358 1.07457 1.17897 0.99452 0.95860 0.85674 1.20175 1.05000 1.01320 0.92831 1.20467 1.05951 0.98190 0.96931 1.20546 1.01294 0.97469 0.97633 1.20864 1.03572 1.01568 0.91850 1.17530 0.93045 0.91334 0.94238 1.19376 1.37952 0.93198 1.01366 0.90338 1.26622 0.95347 0.96761 0.99347 1.69915 1.36210 1.04006 1.36539 0.85245 0.78616 0.77795 0.78264 1.18945 1.20208 1.18052 0.88938 0.87971 0.92960 0.79272 0.77387 0.75626 0.89285 0.87001 0.87668 0.87895 0.90731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.53 9.83 71.23 0.70 -1.83 16 2 C -0.03 -0.72 5.93 -19.55 -0.12 -0.84 16 3 C -0.16 -2.96 9.81 22.34 0.22 -2.74 16 4 C 0.13 2.66 11.17 84.64 0.95 3.61 16 5 N -0.54 -17.09 10.37 -196.35 -2.04 -19.12 16 6 C 0.27 10.09 7.86 84.94 0.67 10.76 16 7 F -0.13 -5.76 17.11 44.97 0.77 -4.99 16 8 C 0.08 2.74 4.59 38.36 0.18 2.92 16 9 N -0.69 -28.60 4.24 -178.86 -0.76 -29.36 16 10 C 0.11 5.26 6.61 39.03 0.26 5.52 16 11 C -0.17 -7.98 9.24 22.38 0.21 -7.77 16 12 C -0.20 -8.99 10.03 22.41 0.22 -8.77 16 13 C -0.15 -7.26 9.96 22.01 0.22 -7.04 16 14 C -0.16 -8.46 8.61 22.46 0.19 -8.27 16 15 C 0.04 2.29 5.57 -21.16 -0.12 2.17 16 16 C -0.49 -25.33 8.44 23.35 0.20 -25.13 16 17 H 0.08 3.80 6.81 -2.91 -0.02 3.78 16 18 C 0.03 1.60 5.21 85.24 0.44 2.05 16 19 N -0.84 -44.82 10.90 21.82 0.24 -44.58 16 20 Si 0.98 38.36 29.58 68.60 2.03 40.39 16 21 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 22 H -0.28 -10.64 7.11 99.48 0.71 -9.94 16 23 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 24 H 0.09 1.81 8.14 -2.38 -0.02 1.80 16 25 H 0.10 1.67 8.10 -2.38 -0.02 1.65 16 26 H 0.05 1.59 7.51 -2.39 -0.02 1.58 16 27 H 0.19 1.68 8.06 -2.91 -0.02 1.65 16 28 H 0.21 2.32 8.06 -2.91 -0.02 2.30 16 29 H 0.41 16.72 7.13 -92.71 -0.66 16.06 16 30 H 0.09 3.96 6.62 -2.91 -0.02 3.95 16 31 H 0.11 4.47 8.06 -2.91 -0.02 4.45 16 32 H 0.11 4.54 8.06 -2.91 -0.02 4.51 16 33 H 0.10 5.78 6.21 -2.91 -0.02 5.76 16 34 H 0.28 13.83 8.30 -92.70 -0.77 13.06 16 Total: -1.00 -65.63 297.44 4.94 -60.69 By element: Atomic # 1 Polarization: 31.85 SS G_CDS: 0.48 Total: 32.33 kcal Atomic # 6 Polarization: -39.58 SS G_CDS: 4.22 Total: -35.36 kcal Atomic # 7 Polarization: -90.51 SS G_CDS: -2.56 Total: -93.06 kcal Atomic # 9 Polarization: -5.76 SS G_CDS: 0.77 Total: -4.99 kcal Atomic # 14 Polarization: 38.36 SS G_CDS: 2.03 Total: 40.39 kcal Total: -65.63 4.94 -60.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212559196.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.074 kcal (2) G-P(sol) polarization free energy of solvation -65.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds