Wall clock time and date at job start Mon Mar 30 2020 01:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38663 * 120.80890 * 2 1 4 4 C 1.38109 * 119.29681 * 179.97438 * 3 2 1 5 5 N 1.31988 * 120.95287 * 0.02562 * 4 3 2 6 6 C 1.31914 * 121.76775 * 359.97438 * 5 4 3 7 7 F 1.35092 * 119.70027 * 180.02562 * 6 5 4 8 8 C 1.39118 * 120.80657 * 179.97438 * 2 1 3 9 9 N 1.39888 * 120.49882 * 359.74339 * 8 2 1 10 10 C 1.39697 * 119.99883 * 86.55124 * 9 8 2 11 11 C 1.39357 * 119.95427 * 359.63060 * 10 9 8 12 12 C 1.38479 * 120.42182 * 179.71719 * 11 10 9 13 13 C 1.37692 * 120.32299 * 0.55161 * 12 11 10 14 14 C 1.40759 * 119.90034 * 359.72271 * 13 12 11 15 15 C 1.41403 * 120.20354 * 180.02562 * 14 13 12 16 16 H 1.08006 * 119.99973 * 209.03881 * 15 14 13 17 17 C 1.39923 * 120.00524 * 29.03832 * 15 14 13 18 18 N 1.30832 * 119.99931 * 12.60913 * 17 15 14 19 19 Si 1.86801 * 120.00456 * 192.60756 * 17 15 14 20 20 H 1.48504 * 109.46599 * 59.99908 * 19 17 15 21 21 H 1.48493 * 109.47234 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47050 * 300.00341 * 19 17 15 23 23 C 1.38306 * 119.95187 * 179.89412 * 10 9 8 24 24 H 1.09003 * 109.46942 * 270.02120 * 1 2 3 25 25 H 1.09003 * 109.47045 * 30.01909 * 1 2 3 26 26 H 1.08996 * 109.47339 * 150.02152 * 1 2 3 27 27 H 1.08000 * 120.35392 * 359.95841 * 3 2 1 28 28 H 1.08001 * 119.52744 * 179.97438 * 4 3 2 29 29 H 0.96998 * 119.99848 * 266.55416 * 9 8 2 30 30 H 1.08002 * 119.78947 * 359.97438 * 11 10 9 31 31 H 1.07996 * 119.83537 * 180.27647 * 12 11 10 32 32 H 1.08000 * 120.04670 * 179.75095 * 13 12 11 33 33 H 0.97000 * 120.00412 * 180.02562 * 18 17 15 34 34 H 1.07991 * 120.16328 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2172 1.1909 0.0000 4 6 3.5978 1.1545 0.0005 5 7 4.2466 0.0051 0.0005 6 6 3.6112 -1.1510 0.0005 7 9 4.3172 -2.3027 0.0011 8 6 2.2195 -1.1949 0.0005 9 7 1.5478 -2.4220 0.0065 10 6 1.1440 -3.0030 -1.1980 11 6 1.4039 -2.3557 -2.4044 12 6 1.0131 -2.9257 -3.6044 13 6 0.3528 -4.1339 -3.6178 14 6 0.0782 -4.7968 -2.4068 15 6 -0.5990 -6.0381 -2.4130 16 1 -1.2121 -6.3230 -1.5707 17 6 -0.4749 -6.8974 -3.5104 18 7 0.4471 -6.6777 -4.4122 19 14 -1.6256 -8.3582 -3.6877 20 1 -3.0282 -7.8767 -3.7658 21 1 -1.2888 -9.1062 -4.9254 22 1 -1.4741 -9.2531 -2.5124 23 6 0.4819 -4.2173 -1.1911 24 1 -0.3633 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5141 26 1 -0.3634 -0.8901 -0.5135 27 1 1.6963 2.1370 -0.0007 28 1 4.1547 2.0799 0.0001 29 1 1.3625 -2.8693 0.8470 30 1 1.9171 -1.4054 -2.4038 31 1 1.2233 -2.4179 -4.5341 32 1 0.0465 -4.5724 -4.5560 33 1 0.5329 -7.2731 -5.1732 34 1 0.2765 -4.7180 -0.2567 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212559359.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:48 Heat of formation + Delta-G solvation = 14.201532 kcal Electronic energy + Delta-G solvation = -19931.695834 eV Core-core repulsion = 16743.574631 eV Total energy + Delta-G solvation = -3188.121203 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.70012 -40.26078 -37.85833 -35.49221 -33.59041 -32.86737 -30.15154 -29.72213 -28.22528 -26.85267 -25.22890 -23.13824 -22.14304 -20.92202 -20.36895 -17.59580 -17.39054 -17.30702 -16.68984 -15.92795 -15.34333 -15.03604 -14.70777 -14.43719 -13.73570 -13.61860 -13.27796 -12.92692 -12.79962 -12.53967 -12.52932 -12.19358 -11.85296 -11.78317 -11.35716 -11.12592 -10.79955 -10.51082 -10.06294 -9.80852 -9.48703 -9.39001 -9.29451 -8.92522 -8.75119 -7.42968 -6.71509 -6.44892 -4.37211 0.93912 1.11680 2.83062 3.08467 3.11082 3.11734 3.26636 3.52145 3.66707 3.93274 3.99766 4.53389 4.67426 4.69555 5.00534 5.26450 5.45863 5.60817 5.69760 5.75142 5.81993 6.07993 6.22341 6.32801 6.42550 6.53971 6.94088 6.98657 7.07771 7.21180 7.28350 7.64088 7.71135 7.81367 8.06773 8.14444 8.38160 8.43583 8.70031 8.93972 9.01732 10.26124 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.033668 B = 0.004453 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.441941 B = 6286.926750 C = 6474.931676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.018 4.018 3 C -0.185 4.185 4 C 0.126 3.874 5 N -0.519 5.519 6 C 0.304 3.696 7 F -0.105 7.105 8 C 0.103 3.897 9 N -0.709 5.709 10 C 0.215 3.785 11 C -0.286 4.286 12 C -0.077 4.077 13 C -0.186 4.186 14 C 0.141 3.859 15 C -0.466 4.466 16 H 0.076 0.924 17 C 0.076 3.924 18 N -0.798 5.798 19 Si 0.909 3.091 20 H -0.264 1.264 21 H -0.279 1.279 22 H -0.266 1.266 23 C -0.274 4.274 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.088 0.912 27 H 0.141 0.859 28 H 0.164 0.836 29 H 0.402 0.598 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.116 0.884 33 H 0.280 0.720 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.279 11.937 6.938 13.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.028 4.028 3 C -0.206 4.206 4 C -0.030 4.030 5 N -0.234 5.234 6 C 0.148 3.852 7 F -0.084 7.084 8 C 0.005 3.995 9 N -0.342 5.342 10 C 0.120 3.880 11 C -0.309 4.309 12 C -0.096 4.096 13 C -0.206 4.206 14 C 0.138 3.862 15 C -0.496 4.496 16 H 0.094 0.906 17 C -0.141 4.141 18 N -0.423 5.423 19 Si 0.734 3.266 20 H -0.189 1.189 21 H -0.204 1.204 22 H -0.191 1.191 23 C -0.297 4.297 24 H 0.094 0.906 25 H 0.090 0.910 26 H 0.106 0.894 27 H 0.159 0.841 28 H 0.182 0.818 29 H 0.239 0.761 30 H 0.098 0.902 31 H 0.105 0.895 32 H 0.133 0.867 33 H 0.091 0.909 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.360 11.862 6.623 13.654 hybrid contribution -0.984 -1.072 0.124 1.460 sum 0.376 10.790 6.747 12.732 Atomic orbital electron populations 1.20792 0.89234 1.04413 1.02753 1.20775 0.97749 0.91498 0.92757 1.22023 0.95169 0.98649 1.04714 1.22403 0.91663 0.94371 0.94585 1.66981 1.42202 0.97786 1.16454 1.18933 0.86792 0.81900 0.97553 1.91629 1.79219 1.44693 1.92870 1.17970 0.88865 0.88339 1.04314 1.41647 1.65457 1.19844 1.07273 1.17437 0.94620 0.92231 0.83668 1.19836 1.17133 1.02275 0.91652 1.20443 0.98115 0.95843 0.95159 1.21221 1.05755 0.94726 0.98906 1.17333 0.87509 0.91209 0.90129 1.19495 1.26390 1.01066 1.02631 0.90620 1.25871 0.94401 0.99181 0.94657 1.69818 1.26731 1.35862 1.09925 0.86359 0.81211 0.80667 0.78376 1.18911 1.20394 1.19106 1.20447 1.13396 0.97830 0.98021 0.90586 0.91016 0.89363 0.84111 0.81846 0.76132 0.90178 0.89456 0.86651 0.90943 0.88880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.38 9.83 36.01 0.35 -1.02 16 2 C -0.02 -0.25 5.86 -104.14 -0.61 -0.86 16 3 C -0.18 -2.02 9.81 -39.47 -0.39 -2.41 16 4 C 0.13 1.47 11.17 -17.53 -0.20 1.28 16 5 N -0.52 -8.16 10.37 -13.43 -0.14 -8.29 16 6 C 0.30 5.31 8.43 -17.14 -0.14 5.16 16 7 F -0.11 -2.03 17.11 2.25 0.04 -2.00 16 8 C 0.10 1.70 4.36 -83.48 -0.36 1.33 16 9 N -0.71 -12.71 4.53 -8.29 -0.04 -12.75 16 10 C 0.22 4.73 5.88 -83.83 -0.49 4.24 16 11 C -0.29 -6.53 9.33 -39.08 -0.36 -6.89 16 12 C -0.08 -1.83 10.02 -39.69 -0.40 -2.23 16 13 C -0.19 -4.86 8.65 -38.83 -0.34 -5.20 16 14 C 0.14 3.75 5.54 -106.85 -0.59 3.16 16 15 C -0.47 -12.32 9.05 -37.75 -0.34 -12.66 16 16 H 0.08 1.91 7.88 -52.48 -0.41 1.50 16 17 C 0.08 1.92 5.21 -17.35 -0.09 1.83 16 18 N -0.80 -20.91 10.96 55.55 0.61 -20.30 16 19 Si 0.91 18.75 29.58 -169.99 -5.03 13.72 16 20 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 21 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 22 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 23 C -0.27 -6.59 9.63 -38.67 -0.37 -6.97 16 24 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 26 H 0.09 1.32 6.92 -51.93 -0.36 0.96 16 27 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 28 H 0.16 1.28 8.06 -52.49 -0.42 0.86 16 29 H 0.40 6.43 8.83 -40.82 -0.36 6.07 16 30 H 0.08 1.75 6.91 -52.49 -0.36 1.39 16 31 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 32 H 0.12 3.12 6.31 -52.49 -0.33 2.79 16 33 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 34 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 LS Contribution 300.24 15.07 4.52 4.52 Total: -1.00 -29.33 300.24 -7.86 -37.20 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -3.50 Total: 9.14 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: -4.34 Total: -21.24 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: 0.43 Total: -41.34 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.04 Total: -2.00 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.72 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.33 -7.86 -37.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212559359.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.400 kcal (2) G-P(sol) polarization free energy of solvation -29.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds