Wall clock time and date at job start Mon Mar 30 2020 01:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38663 * 120.80890 * 2 1 4 4 C 1.38109 * 119.29681 * 179.97438 * 3 2 1 5 5 N 1.31988 * 120.95287 * 0.02562 * 4 3 2 6 6 C 1.31914 * 121.76775 * 359.97438 * 5 4 3 7 7 F 1.35092 * 119.70027 * 180.02562 * 6 5 4 8 8 C 1.39118 * 120.80657 * 179.97438 * 2 1 3 9 9 N 1.39888 * 120.49882 * 359.74339 * 8 2 1 10 10 C 1.39697 * 119.99883 * 86.55124 * 9 8 2 11 11 C 1.39357 * 119.95427 * 359.63060 * 10 9 8 12 12 C 1.38479 * 120.42182 * 179.71719 * 11 10 9 13 13 C 1.37692 * 120.32299 * 0.55161 * 12 11 10 14 14 C 1.40759 * 119.90034 * 359.72271 * 13 12 11 15 15 C 1.41403 * 120.20354 * 180.02562 * 14 13 12 16 16 H 1.08006 * 119.99973 * 209.03881 * 15 14 13 17 17 C 1.39923 * 120.00524 * 29.03832 * 15 14 13 18 18 N 1.30832 * 119.99931 * 12.60913 * 17 15 14 19 19 Si 1.86801 * 120.00456 * 192.60756 * 17 15 14 20 20 H 1.48504 * 109.46599 * 59.99908 * 19 17 15 21 21 H 1.48493 * 109.47234 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47050 * 300.00341 * 19 17 15 23 23 C 1.38306 * 119.95187 * 179.89412 * 10 9 8 24 24 H 1.09003 * 109.46942 * 270.02120 * 1 2 3 25 25 H 1.09003 * 109.47045 * 30.01909 * 1 2 3 26 26 H 1.08996 * 109.47339 * 150.02152 * 1 2 3 27 27 H 1.08000 * 120.35392 * 359.95841 * 3 2 1 28 28 H 1.08001 * 119.52744 * 179.97438 * 4 3 2 29 29 H 0.96998 * 119.99848 * 266.55416 * 9 8 2 30 30 H 1.08002 * 119.78947 * 359.97438 * 11 10 9 31 31 H 1.07996 * 119.83537 * 180.27647 * 12 11 10 32 32 H 1.08000 * 120.04670 * 179.75095 * 13 12 11 33 33 H 0.97000 * 120.00412 * 180.02562 * 18 17 15 34 34 H 1.07991 * 120.16328 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2172 1.1909 0.0000 4 6 3.5978 1.1545 0.0005 5 7 4.2466 0.0051 0.0005 6 6 3.6112 -1.1510 0.0005 7 9 4.3172 -2.3027 0.0011 8 6 2.2195 -1.1949 0.0005 9 7 1.5478 -2.4220 0.0065 10 6 1.1440 -3.0030 -1.1980 11 6 1.4039 -2.3557 -2.4044 12 6 1.0131 -2.9257 -3.6044 13 6 0.3528 -4.1339 -3.6178 14 6 0.0782 -4.7968 -2.4068 15 6 -0.5990 -6.0381 -2.4130 16 1 -1.2121 -6.3230 -1.5707 17 6 -0.4749 -6.8974 -3.5104 18 7 0.4471 -6.6777 -4.4122 19 14 -1.6256 -8.3582 -3.6877 20 1 -3.0282 -7.8767 -3.7658 21 1 -1.2888 -9.1062 -4.9254 22 1 -1.4741 -9.2531 -2.5124 23 6 0.4819 -4.2173 -1.1911 24 1 -0.3633 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5141 26 1 -0.3634 -0.8901 -0.5135 27 1 1.6963 2.1370 -0.0007 28 1 4.1547 2.0799 0.0001 29 1 1.3625 -2.8693 0.8470 30 1 1.9171 -1.4054 -2.4038 31 1 1.2233 -2.4179 -4.5341 32 1 0.0465 -4.5724 -4.5560 33 1 0.5329 -7.2731 -5.1732 34 1 0.2765 -4.7180 -0.2567 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212559359.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:48 Heat of formation + Delta-G solvation = -2.445539 kcal Electronic energy + Delta-G solvation = -19932.417705 eV Core-core repulsion = 16743.574631 eV Total energy + Delta-G solvation = -3188.843074 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.04877 -41.41171 -39.56601 -37.03437 -35.20930 -34.21580 -31.77872 -31.34354 -29.46036 -28.24159 -27.15774 -24.36074 -23.25491 -22.77234 -22.10420 -19.36009 -18.62829 -18.49716 -18.01235 -17.54686 -16.96699 -16.56890 -16.35528 -15.76076 -15.00108 -14.87269 -14.76497 -14.48734 -14.22438 -14.02768 -13.65609 -13.54431 -13.51710 -13.08513 -12.84598 -12.74944 -12.67578 -12.18476 -11.83563 -11.37672 -11.29665 -10.99424 -10.53632 -10.46539 -9.90366 -9.36475 -8.59553 -8.18892 -6.36950 -0.16088 0.05359 1.00188 1.24477 1.39794 1.51594 1.56662 2.22661 2.35764 2.57103 2.64576 2.79816 3.48150 3.75316 3.78949 4.07698 4.22979 4.43412 4.53384 4.58251 4.70047 4.76243 4.80648 5.06206 5.09885 5.14052 5.19578 5.30783 5.34505 5.41694 5.58794 5.87496 5.96034 6.13649 6.23338 6.54793 6.61795 6.79588 6.87513 6.98468 7.11071 8.39529 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.033668 B = 0.004453 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.441941 B = 6286.926750 C = 6474.931676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.021 4.021 3 C -0.162 4.162 4 C 0.131 3.869 5 N -0.540 5.540 6 C 0.272 3.728 7 F -0.130 7.130 8 C 0.075 3.925 9 N -0.699 5.699 10 C 0.233 3.767 11 C -0.287 4.287 12 C -0.077 4.077 13 C -0.216 4.216 14 C 0.115 3.885 15 C -0.501 4.501 16 H 0.076 0.924 17 C 0.034 3.966 18 N -0.832 5.832 19 Si 0.984 3.016 20 H -0.258 1.258 21 H -0.269 1.269 22 H -0.261 1.261 23 C -0.292 4.292 24 H 0.096 0.904 25 H 0.099 0.901 26 H 0.053 0.947 27 H 0.189 0.811 28 H 0.209 0.791 29 H 0.409 0.591 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.098 0.902 33 H 0.286 0.714 34 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.214 14.359 7.691 16.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.030 4.030 3 C -0.182 4.182 4 C -0.024 4.024 5 N -0.256 5.256 6 C 0.118 3.882 7 F -0.109 7.109 8 C -0.022 4.022 9 N -0.330 5.330 10 C 0.135 3.865 11 C -0.310 4.310 12 C -0.096 4.096 13 C -0.236 4.236 14 C 0.112 3.888 15 C -0.531 4.531 16 H 0.094 0.906 17 C -0.180 4.180 18 N -0.458 5.458 19 Si 0.805 3.195 20 H -0.182 1.182 21 H -0.194 1.194 22 H -0.185 1.185 23 C -0.316 4.316 24 H 0.114 0.886 25 H 0.117 0.883 26 H 0.072 0.928 27 H 0.207 0.793 28 H 0.226 0.774 29 H 0.246 0.754 30 H 0.111 0.889 31 H 0.125 0.875 32 H 0.116 0.884 33 H 0.096 0.904 34 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.886 14.316 7.413 16.145 hybrid contribution -0.741 -1.552 -0.016 1.720 sum 0.145 12.763 7.397 14.752 Atomic orbital electron populations 1.20815 0.88100 1.04006 1.03932 1.21043 0.98598 0.91263 0.92108 1.22511 0.94865 0.99404 1.01408 1.23281 0.92655 0.94442 0.92056 1.67036 1.43081 0.98258 1.17210 1.19132 0.87098 0.82044 0.99917 1.91557 1.79770 1.46175 1.93395 1.18180 0.88633 0.88444 1.06954 1.41501 1.64717 1.20638 1.06190 1.17412 0.92692 0.91263 0.85115 1.19972 1.16851 1.02697 0.91488 1.20685 0.97147 0.95167 0.96598 1.21132 1.08195 0.96095 0.98212 1.17685 0.88152 0.91862 0.91127 1.19784 1.27609 1.01908 1.03787 0.90556 1.26761 0.95561 1.01945 0.93755 1.69897 1.28103 1.37261 1.10556 0.85225 0.78838 0.76781 0.78655 1.18248 1.19384 1.18503 1.20560 1.14435 0.98982 0.97631 0.88601 0.88278 0.92820 0.79346 0.77430 0.75359 0.88892 0.87499 0.88428 0.90351 0.88306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.34 9.83 71.24 0.70 -1.64 16 2 C -0.02 -0.50 5.86 -19.55 -0.11 -0.61 16 3 C -0.16 -2.73 9.81 22.34 0.22 -2.51 16 4 C 0.13 2.52 11.17 84.64 0.95 3.46 16 5 N -0.54 -15.95 10.37 -196.42 -2.04 -17.98 16 6 C 0.27 9.39 8.43 84.92 0.72 10.10 16 7 F -0.13 -5.16 17.11 44.97 0.77 -4.39 16 8 C 0.08 2.39 4.36 38.31 0.17 2.56 16 9 N -0.70 -25.07 4.53 -180.15 -0.82 -25.89 16 10 C 0.23 10.37 5.88 38.17 0.22 10.60 16 11 C -0.29 -13.13 9.33 22.60 0.21 -12.92 16 12 C -0.08 -3.75 10.02 22.20 0.22 -3.53 16 13 C -0.22 -11.77 8.65 22.76 0.20 -11.57 16 14 C 0.11 6.35 5.54 -21.31 -0.12 6.23 16 15 C -0.50 -27.53 9.05 23.46 0.21 -27.32 16 16 H 0.08 4.01 7.88 -2.91 -0.02 3.98 16 17 C 0.03 1.74 5.21 85.25 0.44 2.19 16 18 N -0.83 -45.05 10.96 21.82 0.24 -44.81 16 19 Si 0.98 38.96 29.58 68.60 2.03 40.98 16 20 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 21 H -0.27 -10.13 7.11 99.48 0.71 -9.43 16 22 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 23 C -0.29 -14.58 9.63 22.86 0.22 -14.36 16 24 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.10 1.53 8.10 -2.39 -0.02 1.51 16 26 H 0.05 1.53 6.92 -2.39 -0.02 1.51 16 27 H 0.19 1.44 8.06 -2.91 -0.02 1.41 16 28 H 0.21 2.04 8.06 -2.91 -0.02 2.01 16 29 H 0.41 13.21 8.83 -92.71 -0.82 12.39 16 30 H 0.09 3.98 6.91 -2.91 -0.02 3.96 16 31 H 0.11 4.64 8.06 -2.91 -0.02 4.61 16 32 H 0.10 5.57 6.31 -2.91 -0.02 5.55 16 33 H 0.29 14.07 8.30 -92.71 -0.77 13.30 16 34 H 0.10 4.65 8.06 -2.92 -0.02 4.63 16 Total: -1.00 -67.56 300.24 4.76 -62.80 By element: Atomic # 1 Polarization: 28.27 SS G_CDS: 0.32 Total: 28.59 kcal Atomic # 6 Polarization: -43.56 SS G_CDS: 4.25 Total: -39.31 kcal Atomic # 7 Polarization: -86.06 SS G_CDS: -2.61 Total: -88.67 kcal Atomic # 9 Polarization: -5.16 SS G_CDS: 0.77 Total: -4.39 kcal Atomic # 14 Polarization: 38.96 SS G_CDS: 2.03 Total: 40.98 kcal Total: -67.56 4.76 -62.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212559359.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.359 kcal (2) G-P(sol) polarization free energy of solvation -67.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds