Wall clock time and date at job start Mon Mar 30 2020 01:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38439 * 120.81266 * 2 1 4 4 C 1.38547 * 119.22438 * 180.30007 * 3 2 1 5 5 F 1.35103 * 119.56182 * 179.70288 * 4 3 2 6 6 N 1.32051 * 120.87421 * 359.45040 * 4 3 2 7 7 C 1.31845 * 121.77030 * 0.54524 * 6 4 3 8 8 C 1.38884 * 120.68355 * 359.74133 * 7 6 4 9 9 N 1.39735 * 120.46755 * 179.97438 * 8 7 6 10 10 C 1.38786 * 120.00473 * 352.61568 * 9 8 7 11 11 C 1.39617 * 119.84117 * 318.23917 * 10 9 8 12 12 C 1.36309 * 120.15176 * 179.71609 * 11 10 9 13 13 C 1.40904 * 119.84149 * 0.57181 * 12 11 10 14 14 C 1.41105 * 120.15057 * 179.68035 * 13 12 11 15 15 H 1.07997 * 119.99426 * 213.81663 * 14 13 12 16 16 C 1.39839 * 120.00078 * 33.81379 * 14 13 12 17 17 N 1.30918 * 120.00090 * 358.48718 * 16 14 13 18 18 Si 1.86804 * 119.99808 * 178.48099 * 16 14 13 19 19 H 1.48496 * 109.47086 * 90.00393 * 18 16 14 20 20 H 1.48496 * 109.47233 * 210.00352 * 18 16 14 21 21 H 1.48494 * 109.47149 * 330.00274 * 18 16 14 22 22 C 1.40907 * 119.69818 * 359.69726 * 13 12 11 23 23 C 1.36310 * 119.83556 * 0.02562 * 22 13 12 24 24 H 1.09001 * 109.47331 * 89.99129 * 1 2 3 25 25 H 1.09003 * 109.47350 * 209.99907 * 1 2 3 26 26 H 1.09005 * 109.46721 * 329.99905 * 1 2 3 27 27 H 1.07994 * 120.38523 * 0.03014 * 3 2 1 28 28 H 1.08002 * 119.65709 * 179.72870 * 7 6 4 29 29 H 0.97005 * 120.00188 * 172.61595 * 9 8 7 30 30 H 1.08001 * 119.92375 * 359.97172 * 11 10 9 31 31 H 1.08004 * 120.07755 * 180.28887 * 12 11 10 32 32 H 0.97003 * 119.99515 * 179.97438 * 17 16 14 33 33 H 1.07997 * 120.08469 * 179.97438 * 22 13 12 34 34 H 1.07999 * 119.91651 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2161 1.1890 0.0000 4 6 3.6010 1.1506 -0.0063 5 9 4.2999 2.3068 -0.0125 6 7 4.2470 -0.0011 -0.0015 7 6 3.6090 -1.1549 -0.0011 8 6 2.2208 -1.1971 -0.0005 9 7 1.5492 -2.4225 -0.0007 10 6 2.2608 -3.6039 -0.1559 11 6 3.2946 -3.6744 -1.0917 12 6 4.0014 -4.8298 -1.2453 13 6 3.6786 -5.9581 -0.4655 14 6 4.4016 -7.1595 -0.6240 15 1 3.9033 -8.1097 -0.5010 16 6 5.7632 -7.1196 -0.9403 17 7 6.3603 -5.9683 -1.1186 18 14 6.7299 -8.7092 -1.1083 19 1 6.6708 -9.1780 -2.5160 20 1 8.1446 -8.4710 -0.7248 21 1 6.1428 -9.7421 -0.2175 22 6 2.6303 -5.8815 0.4729 23 6 1.9356 -4.7180 0.6201 24 1 -0.3634 0.0002 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6958 2.1353 0.0005 28 1 4.1717 -2.0767 -0.0015 29 1 0.5856 -2.4475 0.1077 30 1 3.5375 -2.8103 -1.6923 31 1 4.8039 -4.8816 -1.9663 32 1 7.3049 -5.9407 -1.3376 33 1 2.3774 -6.7426 1.0736 34 1 1.1322 -4.6576 1.3393 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212814973.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:50 Heat of formation + Delta-G solvation = 0.685773 kcal Electronic energy + Delta-G solvation = -19618.707166 eV Core-core repulsion = 16429.999876 eV Total energy + Delta-G solvation = -3188.707290 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.83779 -41.57855 -39.64849 -37.06250 -35.33269 -34.38027 -31.62812 -31.26894 -29.84459 -28.76287 -26.74746 -24.21759 -23.55595 -22.55263 -22.09564 -19.28569 -19.03047 -18.39345 -18.16713 -17.22883 -16.97344 -16.85618 -15.88246 -15.46603 -15.40597 -14.80441 -14.67620 -14.46301 -14.29779 -13.95127 -13.74774 -13.65349 -13.50221 -13.15601 -12.91904 -12.81755 -12.59755 -12.30151 -12.12228 -11.64280 -11.22902 -11.05096 -10.68847 -10.46994 -9.53712 -9.40551 -8.52175 -8.23851 -6.29513 0.00818 0.16023 0.93119 1.10848 1.40369 1.49090 1.54549 2.23311 2.39155 2.61126 2.80526 2.81578 3.58298 3.67562 3.70304 3.86772 4.29066 4.33788 4.44238 4.53652 4.57966 4.79646 4.81429 4.99222 5.09334 5.14206 5.17578 5.21757 5.36141 5.50002 5.67858 5.71731 5.91677 6.09296 6.25207 6.44923 6.65216 6.73281 6.89225 6.96679 7.05922 8.41323 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.026554 B = 0.004449 C = 0.003891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.205645 B = 6291.973986 C = 7194.633506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.090 4.090 3 C -0.132 4.132 4 C 0.212 3.788 5 F -0.129 7.129 6 N -0.513 5.513 7 C 0.045 3.955 8 C 0.155 3.845 9 N -0.644 5.644 10 C 0.033 3.967 11 C -0.126 4.126 12 C -0.156 4.156 13 C 0.066 3.934 14 C -0.494 4.494 15 H 0.078 0.922 16 C 0.027 3.973 17 N -0.843 5.843 18 Si 0.985 3.015 19 H -0.263 1.263 20 H -0.274 1.274 21 H -0.257 1.257 22 C -0.206 4.206 23 C -0.108 4.108 24 H 0.090 0.910 25 H 0.076 0.924 26 H 0.099 0.901 27 H 0.183 0.817 28 H 0.149 0.851 29 H 0.417 0.583 30 H 0.097 0.903 31 H 0.107 0.893 32 H 0.283 0.717 33 H 0.108 0.892 34 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.304 9.212 1.804 14.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.102 4.102 3 C -0.154 4.154 4 C 0.057 3.943 5 F -0.109 7.109 6 N -0.227 5.227 7 C -0.117 4.117 8 C 0.048 3.952 9 N -0.267 5.267 10 C -0.061 4.061 11 C -0.146 4.146 12 C -0.177 4.177 13 C 0.064 3.936 14 C -0.525 4.525 15 H 0.096 0.904 16 C -0.185 4.185 17 N -0.471 5.471 18 Si 0.806 3.194 19 H -0.188 1.188 20 H -0.198 1.198 21 H -0.181 1.181 22 C -0.226 4.226 23 C -0.128 4.128 24 H 0.108 0.892 25 H 0.095 0.905 26 H 0.118 0.882 27 H 0.200 0.800 28 H 0.167 0.833 29 H 0.257 0.743 30 H 0.115 0.885 31 H 0.125 0.875 32 H 0.093 0.907 33 H 0.127 0.873 34 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -10.082 9.241 1.739 13.787 hybrid contribution 0.249 -0.554 -0.150 0.626 sum -9.833 8.687 1.588 13.216 Atomic orbital electron populations 1.20770 0.86311 1.04794 1.04176 1.20072 0.98819 0.89108 1.02189 1.21735 0.90935 1.01052 1.01636 1.18261 0.88089 0.81050 1.06949 1.91536 1.80555 1.44396 1.94400 1.66725 1.43376 0.98516 1.14118 1.22304 0.91402 0.94178 1.03830 1.18836 0.92325 0.87547 0.96493 1.41409 1.08822 1.00200 1.76230 1.17186 1.00245 0.87132 1.01561 1.20568 0.98346 0.97452 0.98256 1.21104 1.01181 0.93825 1.01554 1.18020 0.91581 0.93836 0.90159 1.19758 0.94825 0.94065 1.43864 0.90430 1.26726 0.99074 1.00945 0.91756 1.69874 1.12559 1.27789 1.36872 0.85143 0.77095 0.77565 0.79552 1.18787 1.19845 1.18106 1.20945 1.01696 0.98211 1.01731 1.20472 1.01048 0.92762 0.98541 0.89183 0.90538 0.88207 0.80013 0.83347 0.74332 0.88460 0.87489 0.90652 0.87345 0.85247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.38 9.70 71.23 0.69 -0.69 16 2 C -0.09 -2.06 5.93 -19.54 -0.12 -2.18 16 3 C -0.13 -3.10 9.78 22.39 0.22 -2.88 16 4 C 0.21 6.80 8.40 84.73 0.71 7.51 16 5 F -0.13 -4.09 17.29 44.97 0.78 -3.31 16 6 N -0.51 -19.80 10.36 -196.36 -2.04 -21.84 16 7 C 0.04 1.69 9.20 84.85 0.78 2.47 16 8 C 0.15 4.76 6.42 38.31 0.25 5.01 16 9 N -0.64 -19.17 5.36 -179.85 -0.96 -20.13 16 10 C 0.03 1.29 5.89 38.71 0.23 1.52 16 11 C -0.13 -5.61 7.29 22.15 0.16 -5.45 16 12 C -0.16 -8.04 8.60 22.47 0.19 -7.84 16 13 C 0.07 3.44 5.55 -21.27 -0.12 3.32 16 14 C -0.49 -25.99 9.03 23.36 0.21 -25.78 16 15 H 0.08 3.89 7.84 -2.91 -0.02 3.86 16 16 C 0.03 1.35 5.40 85.22 0.46 1.81 16 17 N -0.84 -44.78 10.62 21.81 0.23 -44.54 16 18 Si 0.99 38.56 29.56 68.60 2.03 40.58 16 19 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 20 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 21 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 22 C -0.21 -9.26 9.74 22.47 0.22 -9.04 16 23 C -0.11 -4.17 9.90 22.15 0.22 -3.95 16 24 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.08 0.91 6.58 -2.39 -0.02 0.89 16 26 H 0.10 0.86 8.10 -2.38 -0.02 0.84 16 27 H 0.18 2.71 8.06 -2.91 -0.02 2.69 16 28 H 0.15 6.47 5.35 -2.91 -0.02 6.45 16 29 H 0.42 9.41 6.93 -92.70 -0.64 8.76 16 30 H 0.10 4.23 6.63 -2.91 -0.02 4.21 16 31 H 0.11 5.94 6.15 -2.91 -0.02 5.92 16 32 H 0.28 13.86 8.30 -92.71 -0.77 13.09 16 33 H 0.11 4.54 8.06 -2.91 -0.02 4.52 16 34 H 0.13 4.01 8.06 -2.91 -0.02 3.99 16 Total: -1.00 -61.76 293.56 4.65 -57.10 By element: Atomic # 1 Polarization: 27.79 SS G_CDS: 0.51 Total: 28.30 kcal Atomic # 6 Polarization: -40.26 SS G_CDS: 4.11 Total: -36.16 kcal Atomic # 7 Polarization: -83.75 SS G_CDS: -2.77 Total: -86.52 kcal Atomic # 9 Polarization: -4.09 SS G_CDS: 0.78 Total: -3.31 kcal Atomic # 14 Polarization: 38.56 SS G_CDS: 2.03 Total: 40.58 kcal Total: -61.76 4.65 -57.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212814973.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.789 kcal (2) G-P(sol) polarization free energy of solvation -61.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds